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Dive into the research topics where Thomas Kroll is active.

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Featured researches published by Thomas Kroll.


Nature | 2014

Tracking excited-state charge and spin dynamics in iron coordination complexes

Wenkai Zhang; Roberto Alonso-Mori; Uwe Bergmann; Christian Bressler; Matthieu Chollet; Andreas Galler; Wojciech Gawelda; Ryan G. Hadt; Robert W. Hartsock; Thomas Kroll; Kasper Skov Kjær; K. Kubicek; Henrik T. Lemke; Huiyang W. Liang; Drew A. Meyer; Martin Meedom Nielsen; Carola Purser; Edward I. Solomon; Zheng Sun; Dimosthenis Sokaras; Tim Brandt van Driel; Gyoergy Vanko; Tsu-Chien Weng; Diling Zhu; Kelly J. Gaffney

Crucial to many light-driven processes in transition metal complexes is the absorption and dissipation of energy by 3d electrons. But a detailed understanding of such non-equilibrium excited-state dynamics and their interplay with structural changes is challenging: a multitude of excited states and possible transitions result in phenomena too complex to unravel when faced with the indirect sensitivity of optical spectroscopy to spin dynamics and the flux limitations of ultrafast X-ray sources. Such a situation exists for archetypal polypyridyl iron complexes, such as [Fe(2,2′-bipyridine)3]2+, where the excited-state charge and spin dynamics involved in the transition from a low- to a high-spin state (spin crossover) have long been a source of interest and controversy. Here we demonstrate that femtosecond resolution X-ray fluorescence spectroscopy, with its sensitivity to spin state, can elucidate the spin crossover dynamics of [Fe(2,2′-bipyridine)3]2+ on photoinduced metal-to-ligand charge transfer excitation. We are able to track the charge and spin dynamics, and establish the critical role of intermediate spin states in the crossover mechanism. We anticipate that these capabilities will make our method a valuable tool for mapping in unprecedented detail the fundamental electronic excited-state dynamics that underpin many useful light-triggered molecular phenomena involving 3d transition metal complexes.


Nature | 2016

Structure of photosystem II and substrate binding at room temperature.

Iris D. Young; Mohamed Ibrahim; Ruchira Chatterjee; Sheraz Gul; Franklin Fuller; Sergey Koroidov; Aaron S. Brewster; Rosalie Tran; Roberto Alonso-Mori; Thomas Kroll; Tara Michels-Clark; Hartawan Laksmono; Raymond G. Sierra; Claudiu A. Stan; Rana Hussein; Miao Zhang; Lacey Douthit; Markus Kubin; Casper de Lichtenberg; Long Vo Pham; Håkan Nilsson; Mun Hon Cheah; Dmitriy Shevela; Claudio Saracini; Mackenzie A. Bean; Ina Seuffert; Dimosthenis Sokaras; Tsu-Chien Weng; Ernest Pastor; Clemens Weninger

Light-induced oxidation of water by photosystem II (PS II) in plants, algae and cyanobacteria has generated most of the dioxygen in the atmosphere. PS II, a membrane-bound multi-subunit pigment protein complex, couples the one-electron photochemistry at the reaction centre with the four-electron redox chemistry of water oxidation at the Mn4CaO5 cluster in the oxygen-evolving complex (OEC). Under illumination, the OEC cycles through five intermediate S-states (S0 to S4), in which S1 is the dark-stable state and S3 is the last semi-stable state before O–O bond formation and O2 evolution. A detailed understanding of the O–O bond formation mechanism remains a challenge, and will require elucidation of both the structures of the OEC in the different S-states and the binding of the two substrate waters to the catalytic site. Here we report the use of femtosecond pulses from an X-ray free electron laser (XFEL) to obtain damage-free, room temperature structures of dark-adapted (S1), two-flash illuminated (2F; S3-enriched), and ammonia-bound two-flash illuminated (2F-NH3; S3-enriched) PS II. Although the recent 1.95 Å resolution structure of PS II at cryogenic temperature using an XFEL provided a damage-free view of the S1 state, measurements at room temperature are required to study the structural landscape of proteins under functional conditions, and also for in situ advancement of the S-states. To investigate the water-binding site(s), ammonia, a water analogue, has been used as a marker, as it binds to the Mn4CaO5 cluster in the S2 and S3 states. Since the ammonia-bound OEC is active, the ammonia-binding Mn site is not a substrate water site. This approach, together with a comparison of the native dark and 2F states, is used to discriminate between proposed O–O bond formation mechanisms.


Journal of the American Chemical Society | 2013

Metal–Ligand Covalency of Iron Complexes from High-Resolution Resonant Inelastic X-ray Scattering

Marcus Lundberg; Thomas Kroll; Serena DeBeer; Uwe Bergmann; Samuel A. Wilson; Pieter Glatzel; Dennis Nordlund; Britt Hedman; Keith O. Hodgson; Edward I. Solomon

Data from Kα resonant inelastic X-ray scattering (RIXS) have been used to extract electronic structure information, i.e., the covalency of metal-ligand bonds, for four iron complexes using an experimentally based theoretical model. Kα RIXS involves resonant 1s→3d excitation and detection of the 2p→1s (Kα) emission. This two-photon process reaches similar final states as single-photon L-edge (2p→3d) X-ray absorption spectroscopy (XAS), but involves only hard X-rays and can therefore be used to get high-resolution L-edge-like spectra for metal proteins, solution catalysts and their intermediates. To analyze the information content of Kα RIXS spectra, data have been collected for four characteristic σ-donor and π-back-donation complexes: ferrous tacn [Fe(II)(tacn)2]Br2, ferrocyanide [Fe(II)(CN)6]K4, ferric tacn [Fe(III)(tacn)2]Br3 and ferricyanide [Fe(III)(CN)6]K3. From these spectra metal-ligand covalencies can be extracted using a charge-transfer multiplet model, without previous information from the L-edge XAS experiment. A direct comparison of L-edge XAS and Kα RIXS spectra show that the latter reaches additional final states, e.g., when exciting into the e(g) (σ*) orbitals, and the splitting between final states of different symmetry provides an extra dimension that makes Kα RIXS a more sensitive probe of σ-bonding. Another key difference between L-edge XAS and Kα RIXS is the π-back-bonding features in ferro- and ferricyanide that are significantly more intense in L-edge XAS compared to Kα RIXS. This shows that two methods are complementary in assigning electronic structure. The Kα RIXS approach can thus be used as a stand-alone method, in combination with L-edge XAS for strongly covalent systems that are difficult to probe by UV/vis spectroscopy, or as an extension to conventional absorption spectroscopy for a wide range of transition metal enzymes and catalysts.


Nature Methods | 2017

Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers

Franklin Fuller; Sheraz Gul; Ruchira Chatterjee; E. Sethe Burgie; Iris D. Young; Hugo Lebrette; Vivek Srinivas; Aaron S. Brewster; Tara Michels-Clark; Jonathan Clinger; Babak Andi; Mohamed Ibrahim; Ernest Pastor; Casper de Lichtenberg; Rana Hussein; Christopher J. Pollock; Miao Zhang; Claudiu A Stan; Thomas Kroll; Thomas Fransson; Clemens Weninger; Markus Kubin; Pierre Aller; Louise Lassalle; Philipp Bräuer; Mitchell D. Miller; Muhamed Amin; Sergey Koroidov; Christian G. Roessler; Marc Allaire

X-ray crystallography at X-ray free-electron laser sources is a powerful method for studying macromolecules at biologically relevant temperatures. Moreover, when combined with complementary techniques like X-ray emission spectroscopy, both global structures and chemical properties of metalloenzymes can be obtained concurrently, providing insights into the interplay between the protein structure and dynamics and the chemistry at an active site. The implementation of such a multimodal approach can be compromised by conflicting requirements to optimize each individual method. In particular, the method used for sample delivery greatly affects the data quality. We present here a robust way of delivering controlled sample amounts on demand using acoustic droplet ejection coupled with a conveyor belt drive that is optimized for crystallography and spectroscopy measurements of photochemical and chemical reactions over a wide range of time scales. Studies with photosystem II, the phytochrome photoreceptor, and ribonucleotide reductase R2 illustrate the power and versatility of this method.


Journal of the American Chemical Society | 2014

Resonant Inelastic X-ray Scattering on Ferrous and Ferric Bis-imidazole Porphyrin and Cytochrome c: Nature and Role of the Axial Methionine–Fe Bond

Thomas Kroll; Ryan G. Hadt; Samuel A. Wilson; Marcus Lundberg; James J. Yan; Tsu-Chien Weng; Dimosthenis Sokaras; Roberto Alonso-Mori; D. Casa; M. H. Upton; Britt Hedman; Keith O. Hodgson; Edward I. Solomon

Axial Cu–S(Met) bonds in electron transfer (ET) active sites are generally found to lower their reduction potentials. An axial S(Met) bond is also present in cytochrome c (cyt c) and is generally thought to increase the reduction potential. The highly covalent nature of the porphyrin environment in heme proteins precludes using many spectroscopic approaches to directly study the Fe site to experimentally quantify this bond. Alternatively, L-edge X-ray absorption spectroscopy (XAS) enables one to directly focus on the 3d-orbitals in a highly covalent environment and has previously been successfully applied to porphyrin model complexes. However, this technique cannot be extended to metalloproteins in solution. Here, we use metal K-edge XAS to obtain L-edge like data through 1s2p resonance inelastic X-ray scattering (RIXS). It has been applied here to a bis-imidazole porphyrin model complex and cyt c. The RIXS data on the model complex are directly correlated to L-edge XAS data to develop the complementary nature of these two spectroscopic methods. Comparison between the bis-imidazole model complex and cyt c in ferrous and ferric oxidation states show quantitative differences that reflect differences in axial ligand covalency. The data reveal an increased covalency for the S(Met) relative to N(His) axial ligand and a higher degree of covalency for the ferric states relative to the ferrous states. These results are reproduced by DFT calculations, which are used to evaluate the thermodynamics of the Fe–S(Met) bond and its dependence on redox state. These results provide insight into a number of previous chemical and physical results on cyt c.


Science | 2017

Metalloprotein entatic control of ligand-metal bonds quantified by ultrafast x-ray spectroscopy

Michael W. Mara; Ryan G. Hadt; Marco Reinhard; Thomas Kroll; Hyeongtaek Lim; Robert W. Hartsock; Roberto Alonso-Mori; Matthieu Chollet; James M. Glownia; S. Nelson; Dimosthenis Sokaras; Kristjan Kunnus; Keith O. Hodgson; Britt Hedman; Uwe Bergmann; Kelly J. Gaffney; Edward I. Solomon

Sulfurs balancing act in cytochrome c Cytochrome c enzymes have two distinct functions that depend on the position of a methionine residue. When the sulfur in the methionine side chain coordinates with iron in the enzymes active site, the protein is optimized for electron transfer; otherwise, it is poised for peroxidase activity. Mara et al. used ultrafast x-ray absorption and emission spectroscopy to probe the energetics of this Fe-S bond (see the Perspective by Bren and Raven). By breaking the bond transiently with light and then timing its reformation, they determined that the surrounding protein environment boosts the bond strength by 4 kilocalories per mole—just enough to toggle between each functional state at a practical rate. Science, this issue p. 1276; see also p. 1236 The local structure of cytochrome c enhances the strength of an iron-sulfur bond in the active site by 4 kilocalories per mole. The multifunctional protein cytochrome c (cyt c) plays key roles in electron transport and apoptosis, switching function by modulating bonding between a heme iron and the sulfur in a methionine residue. This Fe–S(Met) bond is too weak to persist in the absence of protein constraints. We ruptured the bond in ferrous cyt c using an optical laser pulse and monitored the bond reformation within the protein active site using ultrafast x-ray pulses from an x-ray free-electron laser, determining that the Fe–S(Met) bond enthalpy is ~4 kcal/mol stronger than in the absence of protein constraints. The 4 kcal/mol is comparable with calculations of stabilization effects in other systems, demonstrating how biological systems use an entatic state for modest yet accessible energetics to modulate chemical function.


Journal of Synchrotron Radiation | 2015

Photon-in photon-out hard X-ray spectroscopy at the Linac Coherent Light Source

Roberto Alonso-Mori; Dimosthenis Sokaras; Diling Zhu; Thomas Kroll; Mathieu Chollet; Yiping Feng; James M. Glownia; Jan Kern; Henrik T. Lemke; Dennis Nordlund; Marcin Sikorski; Sanghoon Song; Tsu Chien Weng; Uwe Bergmann

A description of hard X-ray photon-in photon-out spectroscopy techniques for X-ray free electron laser applications is given. A discussion of the instrumentation suitable for taking full advantage of these new sources and a description of recent measurements performed and related examples are also presented.


Optics Express | 2016

X-ray absorption spectroscopy using a self-seeded soft X-ray free-electron laser

Thomas Kroll; Jan Kern; Markus Kubin; Daniel Ratner; Sheraz Gul; Franklin Fuller; Heike Löchel; J. Krzywinski; Alberto Lutman; Y. Ding; Georgi L. Dakovski; Stefan Moeller; J. J. Turner; Roberto Alonso-Mori; Dennis Nordlund; Jens Rehanek; Christian Weniger; Alexander Firsov; Maria Brzhezinskaya; Ruchira Chatterjee; Benedikt Lassalle-Kaiser; Raymond G. Sierra; Hartawan Laksmono; Ethan Hill; A. S. Borovik; Alexei Erko; A. Föhlisch; Rolf Mitzner; Vittal K. Yachandra; Junko Yano

X-ray free electron lasers (XFELs) enable unprecedented new ways to study the electronic structure and dynamics of transition metal systems. L-edge absorption spectroscopy is a powerful technique for such studies and the feasibility of this method at XFELs for solutions and solids has been demonstrated. However, the required x-ray bandwidth is an order of magnitude narrower than that of self-amplified spontaneous emission (SASE), and additional monochromatization is needed. Here we compare L-edge x-ray absorption spectroscopy (XAS) of a prototypical transition metal system based on monochromatizing the SASE radiation of the linac coherent light source (LCLS) with a new technique based on self-seeding of LCLS. We demonstrate how L-edge XAS can be performed using the self-seeding scheme without the need of an additional beam line monochromator. We show how the spectral shape and pulse energy depend on the undulator setup and how this affects the x-ray spectroscopy measurements.


Physical Review B | 2008

Electronic structure of LaFeAsO 1 − x F x from x-ray absorption spectroscopy

Thomas Kroll; Sébastien Bonhommeau; T. Kachel; H. A. Dürr; J. Werner; G. Behr; A. Koitzsch; R. Hübel; S. Leger; R. Schönfelder; A. K. Ariffin; R. Manzke; F.M.F. de Groot; J. Fink; H. Eschrig; B. Büchner; M. Knupfer

We investigated the recently found superconductor LaO_{1-x}F_xFeAs by X-ray absorption spectroscopy (XAS). From a comparison of the O K-edge with LDA calculations we find good agreement and are able to explain the structure and changes of the spectra with electron doping. An important result from this edge is a limitation of the Hubbard U to values not significantly larger than 1 eV. From experimental Fe L_2,3-edge spectra and charge transfer multiplet calculations we gain further information on important physical values such as hopping parameters, the charge transfer energy Delta, and the on-site Hubbard U. Furthermore we find the system to be very covalent with a large amount of ligand holes. A shift in the chemical potential is visible in the O K- and Fe L_2,3-edge spectra which emphasizes the importance of band effects in these compounds.


Journal of Physical Chemistry B | 2015

Final-State Projection Method in Charge-Transfer Multiplet Calculations : An Analysis of Ti L-Edge Absorption Spectra

Thomas Kroll; Edward I. Solomon; Frank M. F. de Groot

A projection method to determine the final-state configuration character of all peaks in a charge transfer multiplet calculation of a 2p X-ray absorption spectrum is presented using a d(0) system as an example. The projection method is used to identify the most important influences on spectral shape and to map out the configuration weights. The spectral shape of a 2p X-ray absorption or L2,3-edge spectrum is largely determined by the ratio of the 2p core-hole interactions relative to the 2p3d atomic multiplet interaction. This leads to a nontrivial spectral assignment, which makes a detailed theoretical description of experimental spectra valuable for the analysis of bonding.

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Dimosthenis Sokaras

SLAC National Accelerator Laboratory

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Roberto Alonso-Mori

SLAC National Accelerator Laboratory

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Uwe Bergmann

SLAC National Accelerator Laboratory

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Sheraz Gul

Lawrence Berkeley National Laboratory

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Jan Kern

Technical University of Berlin

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Markus Kubin

Helmholtz-Zentrum Berlin

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Dennis Nordlund

SLAC National Accelerator Laboratory

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Franklin Fuller

Lawrence Berkeley National Laboratory

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