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Dive into the research topics where Thomas M. Braun is active.

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Featured researches published by Thomas M. Braun.


Cancer | 2010

Maintenance Therapy With Low-Dose Azacitidine After Allogeneic Hematopoietic Stem Cell Transplantation for Recurrent Acute Myelogenous Leukemia or Myelodysplastic Syndrome: A Dose and Schedule Finding Study

Marcos de Lima; Sergio Giralt; Peter F. Thall; Leandro de Padua Silva; Roy B. Jones; Krishna V. Komanduri; Thomas M. Braun; Hoang Q. Nguyen; Richard E. Champlin; Guillermo Garcia-Manero

Recurrence is a major cause of treatment failure after allogeneic transplantation for acute myelogenous leukemia (AML) and myelodysplastic syndrome (MDS), and treatment options are very limited. Azacitidine is a DNA methyltransferase inhibitor with activity in myeloid disease. The authors hypothesized that low‐dose azacitidine administered after transplant would reduce recurrence rates, and conducted a study to determine a safe dose/schedule combination.


Blood | 2008

A biomarker panel for acute graft-versus-host disease.

Sophie Paczesny; Oleg Krijanovski; Thomas M. Braun; Sung Won Choi; Shawn G. Clouthier; Rork Kuick; David E. Misek; Kenneth R. Cooke; Carrie L. Kitko; Angela C. Weyand; Daniel Bickley; Dawn Jones; Joel Whitfield; Pavan Reddy; John E. Levine; Samir M. Hanash; James L.M. Ferrara

No validated biomarkers exist for acute graft-versus-host disease (GVHD). We screened plasma with antibody microarrays for 120 proteins in a discovery set of 42 patients who underwent transplantation that revealed 8 potential biomarkers for diagnostic of GVHD. We then measured by enzyme-linked immunosorbent assay (ELISA) the levels of these biomarkers in samples from 424 patients who underwent transplantation randomly divided into training (n = 282) and validation (n = 142) sets. Logistic regression analysis of these 8 proteins determined a composite biomarker panel of 4 proteins (interleukin-2-receptor-alpha, tumor-necrosis-factor-receptor-1, interleukin-8, and hepatocyte growth factor) that optimally discriminated patients with and without GVHD. The area under the receiver operating characteristic curve distinguishing these 2 groups in the training set was 0.91 (95% confidence interval, 0.87-0.94) and 0.86 (95% confidence interval, 0.79-0.92) in the validation set. In patients with GVHD, Cox regression analysis revealed that the biomarker panel predicted survival independently of GVHD severity. A panel of 4 biomarkers can confirm the diagnosis of GVHD in patients at onset of clinical symptoms of GVHD and provide prognostic information independent of GVHD severity.


The Journal of Urology | 2008

Refractory Idiopathic Urge Urinary Incontinence and Botulinum A Injection

Linda Brubaker; Holly E. Richter; Anthony G. Visco; Sangeeta T. Mahajan; Ingrid Nygaard; Thomas M. Braun; Matthew D. Barber; Shawn A. Menefee; Joseph I. Schaffer; Anne Weber; John T. Wei

PURPOSE We compared 200 U intradetrusor botulinum toxin A vs placebo in women with refractory idiopathic urge incontinence. MATERIALS AND METHODS This institutional review board approved, multicenter registered trial randomized women with refractory urge incontinence, detrusor overactivity incontinence and 6 or greater urge incontinence episodes in 3 days to botulinum toxin A or placebo at a 2:1 ratio. Refractory was defined as inadequate symptom control after 2 or more attempts at pharmacotherapy and 1 or more other first line therapies for detrusor overactivity incontinence. The primary outcome measure was time to failure, as evidenced by a Patient Global Impression of Improvement score of 4 or greater at least 2 months after injection, or changes in treatment (initiation or increase) at any time after injection. Safety data, including increased post-void residual volume, defined as more than 200 ml irrespective of symptoms, was obtained at specified time points. RESULTS Approximately 60% of the women who received botulinum toxin A had a clinical response based on the Patient Global Impression of Improvement. The median duration of their responses was 373 days, significantly longer than the 62 days or less for placebo (p <0.0001). In the botulinum toxin A group increased post-void residual urine (12 of 28 women or 43%) and urinary tract infection in those with increased post-void residual urine (9 of 12 or 75%) exceeded expected ranges. Further injections were stopped after 43 patients were randomized, including 28 to botulinum toxin A and 15 to placebo. CONCLUSIONS Local injection of 200 U botulinum toxin A was an effective and durable treatment for refractory overactive bladder. However, a transient post-void residual urine increase was experienced in 43% of patients. Botulinum toxin A for idiopathic overactive bladder is still under investigation.


Journal of Clinical Oncology | 2002

Prospective trial of chemotherapy and donor leukocyte infusions for relapse of advanced myeloid malignancies after allogeneic stem-cell transplantation

John E. Levine; Thomas M. Braun; Samuel L. Penza; Patrick Beatty; Kenneth Cornetta; Rodrigo Martino; William R. Drobyski; A. John Barrett; David Porter; Sergio Giralt; Jose Leis; Houston E. Holmes; Matthew D. Johnson; Mary M. Horowitz; Robert H. Collins

PURPOSE Patients with advanced myeloid malignancies who experience relapse after allogeneic bone marrow transplantation (BMT) have a poor prognosis. Long-term survival after chemotherapy alone, second myeloablative transplant, or donor leukocyte infusions (DLIs) alone is unusual. DLIs may have minimal effectiveness in advanced disease because adequate cellular responses are not able to develop in the presence of bulky, fast-growing disease. A chemotherapy strategy was used to debulk disease before administration of granulocyte colony-stimulating factor (G-CSF)-primed DLIs. PATIENTS AND METHODS Sixty-five patients experiencing hematologic relapse of myeloid malignancy after HLA-matched sibling BMT were prospectively treated with cytarabine-based chemotherapy, then G-CSF-primed DLIs. No prophylactic immunosuppression was provided. RESULTS Twenty-seven of 57 assessable patients experienced a complete response. Graft-versus-host disease (GVHD) was observed in 56% of the patients. Treatment-related mortality was 23%. Overall survival at 2 years for the entire cohort was 19%. Patients with a complete response were more likely to survive, with 1- and 2-year survival rates of 51% and 41%, respectively, with a median follow-up of more than 2 years. The 1-year survival for nonresponders was 5%. A posttransplant remission lasting more than 6 months before relapse was associated with a higher likelihood of response. GVHD was not required for durable remission. CONCLUSION Salvage treatment with chemotherapy before DLI can help some patients with advanced myeloid relapse and is not dependent on GVHD. Patients with short remissions after BMT are unlikely to benefit from this approach, and the approach is associated with significant treatment-related mortality. Modifications of this approach or entirely different approaches will be required for most patients with this difficult clinical problem.


The New England Journal of Medicine | 2013

ST2 as a Marker for Risk of Therapy-Resistant Graft-versus-Host Disease and Death

Mark Vander Lugt; Thomas M. Braun; Samir M. Hanash; Jerome Ritz; Vincent T. Ho; Joseph H. Antin; Qing Zhang; Chee Hong Wong; Hong Wang; Alice Chin; Aurelie Gomez; Andrew C. Harris; John E. Levine; Sung W. Choi; Daniel R. Couriel; Pavan Reddy; James L.M. Ferrara; Sophie Paczesny

BACKGROUND No plasma biomarkers are associated with the response of acute graft-versus-host disease (GVHD) to therapy after allogeneic hematopoietic stem-cell transplantation. METHODS We compared 12 biomarkers in plasma obtained a median of 16 days after therapy initiation from 10 patients with a complete response by day 28 after therapy initiation and in plasma obtained from 10 patients with progressive GVHD during therapy. The lead biomarker, suppression of tumorigenicity 2 (ST2), was measured at the beginning of treatment for GVHD in plasma from 381 patients and during the first month after transplantation in three independent sets totaling 673 patients to determine the association of this biomarker with treatment-resistant GVHD and 6-month mortality after treatment or transplantation. RESULTS Of the 12 markers, ST2 had the most significant association with resistance to GVHD therapy and subsequent death without relapse. As compared with patients with low ST2 values at therapy initiation, patients with high ST2 values were 2.3 times as likely to have treatment-resistant GVHD (95% confidence interval [CI], 1.5 to 3.6) and 3.7 times as likely to die within 6 months after therapy (95% CI, 2.3 to 5.9). Patients with low ST2 values had lower mortality without relapse than patients with high ST2 values, regardless of the GVHD grade (11% vs. 31% among patients with grade I or II GVHD and 14% vs. 67% among patients with grade III or IV GVHD, P<0.001 for both comparisons). Plasma ST2 values at day 14 after transplantation were associated with 6-month mortality without relapse, regardless of the intensity of the conditioning regimen. CONCLUSIONS ST2 levels measured at the initiation of therapy for GVHD and during the first month after transplantation improved risk stratification for treatment-resistant GVHD and death without relapse after transplantation. (Funded by the National Institutes of Health.)


Controlled Clinical Trials | 2002

The bivariate continual reassessment method: extending the CRM to phase I trials of two competing outcomes

Thomas M. Braun

Traditional phase I studies find the therapeutic dose of an investigational drug based solely on toxicity and without regard to the drugs efficacy. We propose extending the continual reassessment method (CRM) to a bivariate trial design in which the maximum tolerated dose is based jointly on both toxicity and disease progression. We call our study design bCRM, for bivariate CRM, which we apply to a study of bone marrow patients seeking to find the optimal time after bone marrow transplant at which to taper immune suppression and eventually begin donor leukocyte infusions. We demonstrate through simulation that bCRM has excellent operating characteristics and compare the performance of bCRM in a bone marrow transplantation study to designs proposed by previous investigators. We also attempt to provide some direction to future investigators with regard to plausible models and distributions to use with a bivariate study design.


Blood | 2011

Regenerating islet-derived 3-alpha is a biomarker of gastrointestinal graft-versus-host disease

James L.M. Ferrara; Andrew C. Harris; Joel K. Greenson; Thomas M. Braun; Ernst Holler; Takanori Teshima; John E. Levine; Sung W.J. Choi; Elisabeth Huber; Karin Landfried; Koichi Akashi; Mark Vander Lugt; Pavan Reddy; Alice Chin; Qing Zhang; Samir M. Hanash; Sophie Paczesny

There are no plasma biomarkers specific for GVHD of the gastrointestinal (GI) tract, the GVHD target organ most associated with nonrelapse mortality (NRM) following hematopoietic cell transplantation (HCT). Using an unbiased, large-scale, quantitative proteomic discovery approach to identify candidate biomarkers that were increased in plasma from HCT patients with GI GVHD, 74 proteins were increased at least 2-fold; 5 were of GI origin. We validated the lead candidate, REG3α, by ELISA in samples from 1014 HCT patients from 3 transplantation centers. Plasma REG3α concentrations were 3-fold higher in patients at GI GVHD onset than in all other patients and correlated most closely with lower GI GVHD. REG3α concentrations at GVHD onset predicted response to therapy at 4 weeks, 1-year NRM, and 1-year survival (P ≤ .001). In a multivariate analysis, advanced clinical stage, severe histologic damage, and high REG3α concentrations at GVHD diagnosis independently predicted 1-year NRM, which progressively increased with higher numbers of onset risk factors present: 25% for patients with 0 risk factors to 86% with 3 risk factors present (P < .001). REG3α is a plasma biomarker of GI GVHD that can be combined with clinical stage and histologic grade to improve risk stratification of patients.


The New England Journal of Medicine | 2010

Teriparatide and osseous regeneration in the oral cavity

Jill D. Bashutski; Robert Eber; Janet S. Kinney; Erika Benavides; Samopriyo Maitra; Thomas M. Braun; William V. Giannobile; Laurie K. McCauley

BACKGROUND Intermittent administration of teriparatide, a drug composed of the first 34 amino acids of parathyroid hormone, has anabolic effects on bone. Although teriparatide has been evaluated for the treatment of osteoporosis and for the healing of fractures, clinical trials evaluating it for the treatment of osseous conditions of the oral cavity in humans are lacking. METHODS A total of 40 patients with severe, chronic periodontitis underwent periodontal surgery and received daily injections of teriparatide (20 μg) or placebo, along with oral calcium (1000 mg) and vitamin D (800 IU) supplementation, for 6 weeks. The patients were followed for 1 year. The primary outcome was a radiographic linear measurement of alveolar bone level. Secondary outcomes included clinical variables, bone turnover markers in serum and oral fluid, systemic bone mineral density, and quality of life. RESULTS Radiographic linear resolution of osseous defects was significantly greater after teriparatide therapy than after placebo beginning at 6 months, with a mean linear gain in bone at 1 year of 29% as compared with 3% (P<0.001). Clinical improvement was greater in patients taking teriparatide than in those taking placebo, with a reduction in periodontal probing depth of 33% versus 20% (2.42 mm vs. 1.32 mm) and a gain in clinical attachment level of 22% versus 7% (1.58 mm vs. 0.42 mm) in target lesions at 1 year (P = 0.02 for both comparisons). No serious adverse events were reported; however, the number of patients in the study was small. No significant differences were noted with respect to the other variables that were assessed. CONCLUSIONS Teriparatide, as compared with placebo, was associated with improved clinical outcomes, greater resolution of alveolar bone defects, and accelerated osseous wound healing in the oral cavity. Teriparatide may offer therapeutic potential for localized bone defects in the jaw. (Funded by the National Institutes of Health and others; ClinicalTrials.gov number, NCT00277706 .).


Science Translational Medicine | 2010

Elafin is a biomarker of graft-versus-host disease of the skin.

Sophie Paczesny; Thomas M. Braun; John E. Levine; Jason M. Hogan; Jeffrey Crawford; Bryan N. Coffing; Stephen H. Olsen; Sung W. Choi; Hong Wang; Vitor M. Faça; Sharon J. Pitteri; Qing Zhang; Alice Chin; Carrie L. Kitko; Shin Mineishi; Gregory A. Yanik; Edward Peres; David A. Hanauer; Ying Wang; Pavan Reddy; Samir M. Hanash; James L.M. Ferrara

Plasma elafin concentrations correlate with graft-versus-host disease of the skin and long-term survival. Progress toward biomarker commercialization requires the discovery, qualification, verification, optimization, and clinical validation of a candidate before it is incorporated into existing therapeutic diagnostic platforms. The tremendous value that could be derived from the advancement of methods to detect disease at earlier and more treatable stages puts this pipeline approach at the forefront of biomarker development. However, to date there are no clear success stories in which discovery proteomics has led to a deployed protein biomarker. There is no polymerase chain reaction equivalent available to detect, quantify, and amplify proteins. Rather, proteomics-based biomarker discovery across a wide assortment of diseases is enabled by technologies such as mass spectrometry to sift through a large span of complex analytes at variable concentrations. Now, Paczesny and colleagues use a mass spectrometry–based technique to unambiguously identify candidate plasma biomarkers of skin acute graft-versus-host disease (GVHD)—the primary cause of nonrelapse mortality after bone marrow transplantation (BMT). Rashes are common after BMT and can be caused by a variety of reasons, but because the consequences of GVHD are serious, physicians initiate treatment of suspected GVHD without a bona fide confirmed diagnosis. In the discovery set of this work, the authors examined plasma samples from patients who had received BMT with and without clinical diagnosis of skin GVHD, and found that in patients with skin GVHD, the concentration of one lead marker, elafin, was three times as high. In a follow-up independent validation of 492 BMT patients, skin biopsies stained with elafin stratified the patients consistently according to GVHD parameters, and elafin plasma concentrations were concordantly higher in patients with GVHD. The specificity and sensitivity of elafin relative to other markers revealed that it was the single best discriminator for the diagnosis of GVHD in BMT patients with a rash, and was correlated with the severity of the disease. Elafin concentrations also correlated with the eventual maximum grade of GVHD and with nonrelapse mortality. These results show that elafin concentrations may serve as a noninvasive diagnostic test as well as a prognostic marker in determining GVHD grading in the clinic. Graft-versus-host disease (GVHD), the major complication of allogeneic bone marrow transplantation, affects the skin, liver, and gastrointestinal tract. There are no plasma biomarkers specific for any acute GVHD target organ. We used a large-scale quantitative proteomic discovery procedure to identify biomarker candidates of skin GVHD and validated the lead candidate, elafin, with enzyme-linked immunosorbent assay in samples from 492 patients. Elafin was overexpressed in GVHD skin biopsies. Plasma concentrations of elafin were significantly higher at the onset of skin GVHD, correlated with the eventual maximum grade of GVHD, and were associated with a greater risk of death relative to other known risk factors (hazard ratio, 1.78). We conclude that elafin has significant diagnostic and prognostic value as a biomarker of skin GVHD.


Journal of Dental Research | 2011

Saliva/Pathogen Biomarker Signatures and Periodontal Disease Progression

Janet S. Kinney; Thiago Morelli; Thomas M. Braun; Christoph A. Ramseier; Amy E. Herr; Jim Sugai; Charles E. Shelburne; Lindsay A. Rayburn; Anup K. Singh; William V. Giannobile

The purpose of this study was to determine the role of saliva-derived biomarkers and periodontal pathogens during periodontal disease progression (PDP). One hundred human participants were recruited into a 12-month investigation. They were seen bi-monthly for saliva and clinical measures and bi-annually for subtraction radiography, serum and plaque biofilm assessments. Saliva and serum were analyzed with protein arrays for 14 pro-inflammatory and bone turnover markers, while qPCR was used for detection of biofilm. A hierarchical clustering algorithm was used to group study participants based on clinical, microbiological, salivary/serum biomarkers, and PDP. Eighty-three individuals completed the six-month monitoring phase, with 44 exhibiting PDP, while 39 demonstrated stability. Participants assembled into three clusters based on periodontal pathogens, serum and salivary biomarkers. Cluster 1 members displayed high salivary biomarkers and biofilm; 82% of these individuals were undergoing PDP. Cluster 2 members displayed low biofilm and biomarker levels; 78% of these individuals were stable. Cluster 3 members were not discriminated by PDP status; however, cluster stratification followed groups 1 and 2 based on thresholds of salivary biomarkers and biofilm pathogens. The association of cluster membership to PDP was highly significant (p < 0.0002). The use of salivary and biofilm biomarkers offers potential for the identification of PDP or stability (ClinicalTrials.gov number, CT00277745).

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John E. Levine

Icahn School of Medicine at Mount Sinai

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James L.M. Ferrara

Icahn School of Medicine at Mount Sinai

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Pavan Reddy

University of Michigan

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Carrie L. Kitko

Vanderbilt University Medical Center

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Shin Mineishi

Penn State Cancer Institute

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