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Dive into the research topics where Thomas R. Raffel is active.

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Featured researches published by Thomas R. Raffel.


Ecology Letters | 2014

Community ecology theory predicts the effects of agrochemical mixtures on aquatic biodiversity and ecosystem properties

Neal T. Halstead; Taegan A. McMahon; Steve A. Johnson; Thomas R. Raffel; John M. Romansic; Patrick W. Crumrine; Jason R. Rohr

Ecosystems are often exposed to mixtures of chemical contaminants, but the scientific community lacks a theoretical framework to predict the effects of mixtures on biodiversity and ecosystem properties. We conducted a freshwater mesocosm experiment to examine the effects of pairwise agrochemical mixtures [fertiliser, herbicide (atrazine), insecticide (malathion) and fungicide (chlorothalonil)] on 24 species- and seven ecosystem-level responses. As postulated, the responses of biodiversity and ecosystem properties to agrochemicals alone and in mixtures was predictable by integrating information on each functional groups (1) sensitivity to the chemicals (direct effects), (2) reproductive rates (recovery rates), (3) interaction strength with other functional groups (indirect effects) and (4) links to ecosystem properties. These results show that community ecology theory holds promise for predicting the effects of contaminant mixtures on biodiversity and ecosystem services and yields recommendations on which types of agrochemicals to apply together and separately to reduce their impacts on aquatic ecosystems.


Proceedings of the Royal Society of London B: Biological Sciences | 2015

Temperature variability and moisture synergistically interact to exacerbate an epizootic disease

Thomas R. Raffel; Neal T. Halstead; Taegan A. McMahon; Andrew K. Davis; Jason R. Rohr

Climate change is altering global patterns of precipitation and temperature variability, with implications for parasitic diseases of humans and wildlife. A recent study confirmed predictions that increased temperature variability could exacerbate disease, because of lags in host acclimation following temperature shifts. However, the generality of these host acclimation effects and the potential for them to interact with other factors have yet to be tested. Here, we report similar effects of host thermal acclimation (constant versus shifted temperatures) on chytridiomycosis in red-spotted newts (Notophthalmus viridescens). Batrachochytrium dendrobatidis (Bd) growth on newts was greater following a shift to a new temperature, relative to newts already acclimated to this temperature (15°C versus 25°C). However, these acclimation effects depended on soil moisture (10, 16 and 21% water) and were only observed at the highest moisture level, which induced greatly increased Bd growth and infection-induced mortality. Acclimation effects were also greater following a decrease rather than an increase in temperature. The results are consistent with previous findings that chytridiomycosis is associated with precipitation, lower temperatures and increased temperature variability. This study highlights host acclimation as a potentially general mediator of climate–disease interactions, and the need to account for context-dependencies when testing for acclimation effects on disease.


Conservation Physiology | 2013

Using physiology to understand climate-driven changes in disease and their implications for conservation

Jason R. Rohr; Thomas R. Raffel; Andrew R. Blaustein; Pieter T. J. Johnson; Sara H. Paull; Suzanne Young

Given that host-parasite interactions are generally mediated by physiological responses, we submit that physiological models could facilitate predicting how host-parasite interactions respond to climate change, and might offer theoretical and terminological cohesion that has been lacking in the climate change-disease literature.


Freshwater Science | 2016

Differential consumption and assimilation of leaf litter by wetland herbivores: alternative pathways for decomposition and trophic transfer

Aaron B. Stoler; Michelle N. Golembieski; Jeffrey P. Stephens; Thomas R. Raffel

The process of decomposition has received much attention in terrestrial and stream ecosystems, but our understanding of the factors that contribute to this process in wetlands remains relatively poor. Many macroconsumers in wetlands are classically labeled as herbivores, but increasing evidence suggests that they also contribute to the breakdown of dead plant litter depending on the nutritional quality (i.e., nutrient content, density, and toxicity) of the litter. We examined the relative contributions of 2 common North American temperate wetland consumers, the green frog tadpole (Lithobates clamitans) and the Ram’s Horn snail (Planorbella trivolvis), to the decomposition of 5 chemically variable plant litter species. Based on anatomical differences (e.g., mouth parts, digestive structures), we hypothesized that snails would have higher consumption rates than tadpoles, but that tadpoles would have higher assimilation efficiency. We also predicted that consumption rates and assimilation efficiency would vary with litter nutritional quality. Overall, consumers exhibited substantial detritivory and caused up to 62% litter mass loss relative to treatments with only microbes. As hypothesized, snails consumed more than tadpoles, but this difference was largely explained by differences in consumer mass. Contrary to our hypothesis, snails and tadpoles exhibited similar assimilation efficiencies. Both litter mass loss and assimilation efficiency by consumers differed among litter species treatments. Litter mass loss tended to be negatively correlated with litter C∶N and C∶P, whereas assimilation efficiency had no detectable correlation with any measured litter characteristic. Our study demonstrates that studies of energy and nutrient budgets in wetlands should consider both consumer type and litter species to describe ecosystem function fully.


Ecohealth | 2016

Leaf Litter Inhibits Growth of an Amphibian Fungal Pathogen

Aaron B. Stoler; Keith A. Berven; Thomas R. Raffel

Past studies have found a heterogeneous distribution of the amphibian chytrid fungal pathogen, Batrachochytrium dendrobatidis (Bd). Recent studies have accounted for some of this heterogeneity through a positive association between canopy cover and Bd abundance, which is attributed to the cooling effect of canopy cover. We questioned whether leaf litter inputs that are also associated with canopy cover might also alter Bd growth. Leaf litter inputs exhibit tremendous interspecific chemical variation, and we hypothesized that Bd growth varies with leachate chemistry. We also hypothesized that Bd uses leaf litter as a growth substrate. To test these hypotheses, we conducted laboratory trials in which we exposed cultures of Bd to leachate of 12 temperate leaf litter species at varying dilutions. Using a subset of those 12 litter species, we also exposed Bd to pre-leached litter substrate. We found that exposure to litter leachate and substrate reduced Bd spore and sporangia densities, although there was substantial variation among treatments. In particular, Bd densities were inversely correlated with concentrations of phenolic acids. We conducted a field survey of phenolic concentrations in natural wetlands which verified that the leachate concentrations in our lab study are ecologically relevant. Our study reinforces prior indications that positive associations between canopy cover and Bd abundance are likely mediated by water temperature effects, but this phenomenon might be counteracted by changes in aquatic chemistry from leaf litter inputs.


Oecologia | 2017

Ontogenetic changes in sensitivity to nutrient limitation of tadpole growth

Jeffrey P. Stephens; Aaron B. Stoler; Jason P. Sckrabulis; Aaron J. Fetzer; Keith A. Berven; Scott D. Tiegs; Thomas R. Raffel

According to ecological stoichiometry (ES), the growth of a consumer with abundant resources should increase as body and resource stoichiometry become more similar. However, for organisms with complex life cycles involving distinct changes in biology, nutrient demands might change in response to ontogenetic changes in body stoichiometry. Tadpole growth and development has been found to be largely nitrogen (N) limited, as predicted for organisms developing N-rich tissues like muscle. However, tadpole metamorphosis includes periods of rapid development of phosphorus (P)-rich bones in preparation for a terrestrial lifestyle. We hypothesized that tadpole growth and development will exhibit variable nutrient demands during different stages of ontogeny, due to predictable changes in body tissue stoichiometry. To test this, we raised tadpoles on four diets with varying N:P ratios and assessed growth and developmental rates. Specifically, we predicted that tadpoles would be sensitive to N limitation throughout ontogeny (consistent with previous studies), but also sensitive to P limitation during the process of long-bone ossification. Consistent with our prediction, tadpole growth rates and development were sensitive to N limitation throughout ontogeny. Increased dietary N led to a shorter time to metamorphosis and a larger mass at metamorphosis. Also as predicted, growth rates were sensitive to both N and P during the period of peak bone ossification, indicative of co-limitation. These results indicate that P limitation changes through tadpole ontogeny consistent with, and can be predicted by, shifts in body tissue stoichiometry. Future studies should investigate whether ontogenetic shifts in tadpole P limitation lead to seasonal shifts in wetland nutrient cycling.


bioRxiv | 2018

Temperature-mediated inhibition of a bumble bee parasite by an intestinal symbiont

Evan C. Palmer-Young; Thomas R. Raffel; Quinn S. McFrederick

Competition between organisms is often mediated by environmental factors including temperature. In animal intestines, nonpathogenic symbionts compete physically and chemically against pathogens, with consequences for host infection. We used metabolic theory-based models to characterize differential responses to temperature of a bacterial symbiont and a co-occurring trypanosomatid parasite of bumble bees, which regulate body temperature during flight and incubation. We hypothesized that inhibition of parasites by bacterial symbionts would increase with temperature, due to symbionts having higher optimal growth temperatures than parasites. We found that a temperature increase over the range measured in bumble bee colonies would favor symbionts over parasites. As predicted by our hypothesis, symbionts reduced the optimal growth temperature for parasites, both in direct competition and when parasites were exposed to symbiont spent medium. Inhibitory effects of the symbiont increased with temperature, reflecting accelerated growth and acid production by symbionts. Our results indicate that high temperatures, whether due to host endothermy or environmental factors, can enhance the inhibitory effects of symbionts on parasites. Temperature-modulated manipulation of microbiota could be one explanation for fever- and heat-induced reductions of infection in animals, with consequences for diseases of medical and conservation concern.


Nature Communications | 2018

Agrochemicals increase risk of human schistosomiasis by supporting higher densities of intermediate hosts

Neal T. Halstead; Christopher M. Hoover; Arathi Arakala; David J. Civitello; Giulio A. De Leo; Manoj Gambhir; Steve A. Johnson; Nicolas Jouanard; Kristin A. Loerns; Taegan A. McMahon; Raphael A. Ndione; Karena Nguyen; Thomas R. Raffel; Justin V. Remais; Gilles Riveau; Susanne H. Sokolow; Jason R. Rohr

Schistosomiasis is a snail-borne parasitic disease that ranks among the most important water-based diseases of humans in developing countries. Increased prevalence and spread of human schistosomiasis to non-endemic areas has been consistently linked with water resource management related to agricultural expansion. However, the role of agrochemical pollution in human schistosome transmission remains unexplored, despite strong evidence of agrochemicals increasing snail-borne diseases of wildlife and a projected 2- to 5-fold increase in global agrochemical use by 2050. Using a field mesocosm experiment, we show that environmentally relevant concentrations of fertilizer, a herbicide, and an insecticide, individually and as mixtures, increase densities of schistosome-infected snails by increasing the algae snails eat and decreasing densities of snail predators. Epidemiological models indicate that these agrochemical effects can increase transmission of schistosomes. Identifying agricultural practices or agrochemicals that minimize disease risk will be critical to meeting growing food demands while improving human wellbeing.Agrochemicals can affect the life cycle of human parasites in unexpected ways. Here, Halstead et al. show in mesocosm experiments that agrochemicals increase the density of snails hosting schistosome parasites, and modeling analysis suggests this could lead to increased risk of human schistosomiasis.


bioRxiv | 2017

Agrochemical pollution increases risk of human exposure to schistosome parasites

Neal T. Halstead; Christopher M. Hoover; Arathi Arakala; David J. Civitello; Giulio A. De Leo; Manoj Gambhir; Steven Johnson; Kristin A. Loerns; Taegan A. McMahon; Karena Nguyen; Thomas R. Raffel; Justin V. Remais; Susanne H. Sokolow; Jason R. Rohr

Roughly 10% of the global population is at risk of schistosomiasis, a snail-borne parasitic disease that ranks among the most important water-based diseases of humans in developing countries1–3. Increased prevalence, infection intensity, and spread of human schistosomiasis to non-endemic areas has been consistently linked with water resource management related to agricultural expansion, such as dam construction, which has resulted in increased snail habitat1,4–6. However, the role of agrochemical pollution in human schistosome transmission remains unexplored, despite strong evidence of agrochemicals increasing snail-borne diseases of wildlife7–9 and a projected 2- to 5-fold increase in global agrochemical use by 205010 that will disproportionately occur in schistosome-endemic regions. Using a field mesocosm experiment, we show that environmentally relevant concentrations of fertilizer, the common herbicide atrazine, and the common insecticide chlorpyrifos, individually and as mixtures, increase densities of schistosome-infected snails by increasing the algae snails eat (fertilizer and atrazine) and decreasing densities of snail predators (chlorpyrifos). Epidemiological models indicate that these agrochemical effects can increase transmission of schistosomiasis. Hence, the rapid agricultural changes occurring in schistosome-endemic regions11,12 that are driving increased agrochemical use and pollution could potentially increase the burden of schistosomiasis in these areas. Identifying agricultural practices or agrochemicals that minimize disease risk will be critical to meeting growing food demands while improving human wellbeing13,14.


bioRxiv | 2017

Shifts in temperature influence how Batrachochytrium dendrobatidis infects amphibian larvae

Paul W. Bradley; Michael D Brawner; Thomas R. Raffel; Jason R. Rohr; Deanna H. Olson; Andrew R. Blaustein

Many climate change models predict increases in mean temperature, and increases in frequency and magnitude of temperature fluctuations. These potential shifts may impact ectotherms in several ways, including how they are affected by disease. Shifts in temperature may especially affect amphibians, a group with populations that have been challenged by several pathogens. Because amphibian hosts invest more in immunity at warmer than cooler temperatures and parasites may acclimate to temperature shifts faster than hosts (creating lags in optimal host immunity), researchers have hypothesized that a temperature shift from cold-to-warm might result in increased amphibian sensitivity to pathogens, whereas a shift from warm-to-cold might result in decreased sensitivity. Support for components of this climate-variability based hypothesis have been provided by prior studies of the fungus Batrachochytrium dendrobatidis (Bd) that causes the disease chytridiomycosis in amphibians. We experimentally tested whether temperature shifts before Bd exposure alter susceptibility to Bd in the larval stage of two amphibian species – western toads (Anaxyrus boreas) and northern red legged frogs (Rana aurora). Both host species harbored elevated Bd infection intensities under constant cold (15° C) temperature in comparison to constant warm (20° C) temperature. Additionally, both species experienced an increase in Bd infection abundance when shifted to 20° C from 15° C, compared to a constant 20° C but they experienced a decrease in Bd when shifted to 15° C from 20° C, compared to a constant 15° C. These results are in contrast to prior studies of adult amphibians that found increased susceptibility to Bd infection after a temperature shift in either direction, highlighting the potential for species and stage differences in the temperature-dependence of chytridiomycosis.

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Jason R. Rohr

University of South Florida

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Neal T. Halstead

University of South Florida

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Pieter T. J. Johnson

University of Colorado Boulder

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Aaron B. Stoler

Rensselaer Polytechnic Institute

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Bryan E. LaFonte

University of Colorado Boulder

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Sara H. Paull

University of Colorado Boulder

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