Thomas W. Kuyper

Mycorrhizal responses to biochar in soil – concepts and mechanisms

Experiments suggest that biomass-derived black carbon (biochar) affects microbial populations and soil biogeochemistry. Both biochar and mycorrhizal associations, ubiquitous symbioses in terrestrial ecosystems, are potentially important in various ecosystem services provided by soils, contributing to sustainable plant production, ecosystem restoration, and soil carbon sequestration and hence mitigation of global climate change. As both biochar and mycorrhizal associations are subject to management, understanding and exploiting interactions between them could be advantageous. Here we focus on biochar effects on mycorrhizal associations. After reviewing the experimental evidence for such effects, we critically examine hypotheses pertaining to four mechanisms by which biochar could influence mycorrhizal abundance and/or functioning. These mechanisms are (in decreasing order of currently available evidence supporting them): (a) alteration of soil physico-chemical properties; (b) indirect effects on mycorrhizae through effects on other soil microbes; (c) plant–fungus signaling interference and detoxification of allelochemicals on biochar; and (d) provision of refugia from fungal grazers. We provide a roadmap for research aimed at testing these mechanistic hypotheses.

The role of fungi in weathering

No rock at the Earths surface escapes weathering. This process is the primary source of all the essential elements for organisms, except nitrogen and carbon. Since the onset of terrestrial life, weathering has been accelerated under the influence of biota. The study of biological weathering started at the end of the 19th century. Although the role of bacteria (Eubacteria, Archaea) has attracted a lot of interest, until recently the role of fungi has largely been neglected. More recently, however, fungal weathering has become an increasingly important focus of biogeochemical research.

Rock-eating mycorrhizas: their role in plant nutrition and biogeochemical cycles

A decade ago, tunnels inside mineral grains were found that were likely formed by hyphae of ectomycorrhizal (EcM) fungi. This observation implied that EcM fungi can dissolve mineral grains. The observation raised several questions on the ecology of these “rock-eating” fungi. This review addresses the roles of these rock-eating EcM associations in plant nutrition, biogeochemical cycles and pedogenesis. Research approaches ranged from molecular to ecosystem level scales. Nutrient deficiencies change EcM seedling exudation patterns of organic anions and thus their potential to mobilise base cations from minerals. This response was fungal species-specific. Some EcM fungi accelerated mineral weathering. While mineral weathering could also increase the concentrations of phytotoxic aluminium in the soil solution, some EcM fungi increase Al tolerance through an enhanced exudation of oxalate. Through their contribution to Al transport, EcM hyphae could be agents in pedogenesis, especially podzolisation. A modelling study indicated that mineral tunnelling is less important than surface weathering by EcM fungi. With both processes taken together, the contribution of EcM fungi to weathering may be significant. In the field vertical niche differentiation of EcM fungi was shown for EcM root tips and extraradical mycelium. In the field EcM fungi and tunnel densities were correlated. Our results support a role of rock-eating EcM fungi in plant nutrition and biogeochemical cycles. EcM fungal species-specific differences indicate the need for further research with regard to this variation in functional traits.

The way forward in biochar research: targeting trade-offs between the potential wins

Biochar application to soil is currently widely advocated for a variety of reasons related to sustainability. Typically, soil amelioration with biochar is presented as a multiple‐‘win’ strategy, although it is also associated with potential risks such as environmental contamination. The most often claimed benefits of biochar (i.e. the ‘wins’) include (i) carbon sequestration; (ii) soil fertility enhancement; (iii) biofuel/bioenergy production; (iv) pollutant immobilization; and (v) waste disposal. However, the vast majority of studies ignore possible trade‐offs between them. For example, there is an obvious trade‐off between maximizing biofuel production and maximizing biochar production. Also, relatively little attention has been paid to mechanisms, as opposed to systems impacts, behind observed biochar effects, often leaving open the question as to whether they reflect truly unique properties of biochar as opposed to being simply the short‐term consequences of a fertilization or liming effect. Here, we provide an outline for the future of soil biochar research. We first identify possible trade‐offs between the potential benefits. Second, to be able to better understand and quantify these trade‐offs, we propose guidelines for robust experimental design and selection of appropriate controls that allow both mechanistic and systems assessment of biochar effects and trade‐offs between the wins. Third, we offer a conceptual framework to guide future experiments and suggest guidelines for the standardized reporting of biochar experiments to allow effective between‐site comparisons to quantify trade‐offs. Such a mechanistic and systems framework is required to allow effective comparisons between experiments, across scales and locations, to guide policy and recommendations concerning biochar application to soil.

A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes

Filamentous fungi are critical to the decomposition of terrestrial organic matter and, consequently, in the global carbon cycle. In particular, their contribution to degradation of recalcitrant lignocellulose complexes has been widely studied. In this review, we focus on the functioning of terrestrial fungal decomposers and examine the factors that affect their activities and community dynamics. In relation to this, impacts of global warming and increased N deposition are discussed. We also address the contribution of fungal decomposer studies to the development of general community ecological concepts such as diversity-functioning relationships, succession, priority effects and home-field advantage. Finally, we indicate several research directions that will lead to a more complete understanding of the ecological roles of terrestrial decomposer fungi such as their importance in turnover of rhizodeposits, the consequences of interactions with other organisms and niche differentiation.

Mycorrhizal associations in the rain forest of South Cameroon

Mycorrhizal associations of important tree species were investigated within the research area of the Tropenbos Cameroon Programme (TCP), situated on the western portion of the Atlantic Biafrean forest of south Cameroon. Ninety-seven tree species of economic, social, and ecological importance, and three lianas were selected in three sites that differed in altitude, soil clay content, and soil pH. In each site plots were laid out in undisturbed forest. In each plot, seedlings, saplings, juvenile, and mature trees were identified to species level and counted; girth at breast height measured and basal area calculated; root samples were taken and examined for mycorrhizal type and extent of mycorrhizal colonization. All 100 species investigated were mycorrhizal. Tree of 74 species formed exclusively arbuscular mycorrhizas (AM); 23 trees and three Gnetum species formed ectomycorrhizas (ECM). Five of these ECM plants also harbored AM structures. Extent of mycorrhizal root colonization showed large differences for various AM trees; however, colonization of more than half of these trees was less than 25%. Colonization of ECM trees was often higher than 75%. The contribution of ECM trees to basal area varied between 19 and 35%. ECM trees often occurred in small to large clumps. In sustainable forest management plans, existing ECM forest clumps should be given special conservation value. # 2001 Elsevier Science B.V. All rights reserved.

Colonization by Arbuscular Mycorrhizal Fungi of Sorghum Leads to Reduced Germination and Subsequent Attachment and Emergence of Striga hermonthica

Two sorghum cultivars: the Striga-tolerant S-35 and the Striga-sensitive CK60-B were grown with or without arbuscular mycorrhizal (AM) fungi, and with or without phosphorus addition. At 24 and 45 days after sowing (DAS) of sorghum, root exudates were collected and tested for effects on germination of preconditioned Striga hermonthica seeds. Root exudates from AM sorghum plants induced lower germination of S. hermonthica seeds than exudates from non-mycorrhizal sorghum. The magnitude of this effect depended on the cultivar and harvest time. A significantly (88–97%) lower germination of S. hermonthica seeds upon exposure to root exudates from AM S-35 plants was observed at both harvest times whereas for AM inoculated CK60-B plants a significantly (41%) lower germination was observed only at 45 DAS. The number of S. hermonthica seedlings attached to and emerged on both sorghum cultivars were also lower in mycorrhizal than in non-mycorrhizal plants. Again, this reduction was more pronounced with S-35 than with CK60-B plants. There was no effect of phosphorus addition on Striga seed germination, attachment or emergence. We hypothesize that the negative effect of mycorrhizal colonization on Striga germination and on subsequent attachment and emergence is mediated through the production of signaling molecules (strigolactones) for AM fungi and parasitic plants.

Differences in photosynthetic behaviour and leaf senescence of soybean (Glycine max [L.] Merrill) dependent on N2 fixation or nitrate supply

Biological N(2) fixation can fulfil the N demand of legumes but may cost as much as 14% of current photosynthate. This photosynthate (C) sink strength would result in loss of productivity if rates of photosynthesis did not increase to compensate for the costs. We measured rates of leaf photosynthesis, concentrations of N, ureides and protein in leaves of two soybean cultivars (Glycine max [L.] Merrill) differing in potential shoot biomass production, either associated with Bradyrhizobium japonicum strains, or amended with nitrate. Our results show that the C costs of biological N(2) fixation can be compensated by increased photosynthesis. Nodulated plants shifted N metabolism towards ureide accumulation at the start of the reproductive stage, at which time leaf N concentration of nodulated plants was greater than that of N-fertilized plants. The C sink strength of N(2) fixation increased photosynthetic N use efficiency at the beginning of plant development. At later stages, although average protein concentrations were similar between the groups of plants, maximum leaf protein of nodulated plants occurred a few days later than in N-fertilized plants. The chlorophyll content of nodulated plants remained high until the pod-filling stage, whereas the chlorophyll content of N-fertilized plants started to decrease as early as the flowering stage. These results suggest that, due to higher C sink strength and efficient N(2) fixation, nodulated plants achieve higher rates of photosynthesis and have delayed leaf senescence.

Sustainable soil fertility management in Benin: learning from farmers

The perception of farmers from the Atacora and Save regions of Benin was studied about the causes and consequences of land degradation and corrective actions for sustaining soil fertility. Research methods in this diagnostic study included group discussions, using non-standardized unstructured interviews and participant observations. Farmland degradation leading to declining yields, and land tenure arrangements were identified as the main constraints on the sustainability of agriculture. In both regions the farmers stated that climatic changes (less and more irregular rainfall), run off, erosion, and overexploitation of farmlands caused land degradation. Soil fertility status was assessed on the basis of dicotyledonous weeds, soil texture and colour, and soil fauna (earthworm casting activity). Farmers have adapted their cropping systems to the local environment by developing traditional and new strategies and activities that could contribute to maintain or enhance crop productivity. These strategies include animal manure, inorganic fertilizer, crop rotation, a five-year fallow, extensive cropping systems with cassava or egusi melon, and emigration. Land tenure arrangements between landlords and migrants affect strategies that can be applied to maintain soil fertility. The importance of building mutual trust and the need to experiment with different land tenure arrangements are indicated. A framework for interactive research where knowledge is collectively generated is proposed in order to test the effectiveness and applicability of some of these local innovations not yet well understood by conventional science.

Mycorrhizal responsiveness of aerobic rice genotypes is negatively correlated with their zinc uptake when nonmycorrhizal

Plant Zn uptake from low Zn soils can be increased by Zn-mobilizing chemical rhizosphere processes. We studied whether inoculation with arbuscular mycorrhizal fungi (AMF) can be an additional or an alternative strategy. We determined the effect of AMF inoculation on growth performance and Zn uptake by rice genotypes varying in Zn uptake when nonmycorrhizal. A pot experiment was conducted with six aerobic rice genotypes inoculated with Glomus mosseae or G. etunicatum or without AMF on a low Zn soil. Plant growth, Zn uptake and mycorrhizal responsiveness were determined. AMF-inoculated plants produced more biomass and took up more Zn than nonmycorrhizal controls. Mycorrhizal inoculation, however, significantly increased Zn uptake only in genotypes that had a low Zn uptake in the nonmycorrhizal condition. We conclude that genotypes that are less efficient in Zn uptake when nonmycorrhizal are more responsive to AMF inoculation. We provide examples from literature allowing generalization of this conclusion on a trade off between mycorrhizal responsiveness and nutrient uptake efficiency.