Tilman J. Alpermann

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009–30 November 2009

This article documents the addition of 411 microsatellite marker loci and 15 pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Acanthopagrus schlegeli, Anopheles lesteri, Aspergillus clavatus, Aspergillus flavus, Aspergillus fumigatus, Aspergillus oryzae, Aspergillus terreus, Branchiostoma japonicum, Branchiostoma belcheri, Colias behrii, Coryphopterus personatus, Cynogolssus semilaevis, Cynoglossus semilaevis, Dendrobium officinale, Dendrobium officinale, Dysoxylum malabaricum, Metrioptera roeselii, Myrmeciza exsul, Ochotona thibetana, Neosartorya fischeri, Nothofagus pumilio, Onychodactylus fischeri, Phoenicopterus roseus, Salvia officinalis L., Scylla paramamosain, Silene latifo, Sula sula, and Vulpes vulpes. These loci were cross‐tested on the following species: Aspergillus giganteus, Colias pelidne, Colias interior, Colias meadii, Colias eurytheme, Coryphopterus lipernes, Coryphopterus glaucofrenum, Coryphopterus eidolon, Gnatholepis thompsoni, Elacatinus evelynae, Dendrobium loddigesii Dendrobium devonianum, Dysoxylum binectariferum, Nothofagus antarctica, Nothofagus dombeyii, Nothofagus nervosa, Nothofagus obliqua, Sula nebouxii, and Sula variegata. This article also documents the addition of 39 sequencing primer pairs and 15 allele specific primers or probes for Paralithodes camtschaticus.

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2011 - 30 November 2011: PERMANENT GENETIC RESOURCES NOTEM

This article documents the addition of 139 microsatellite marker loci and 90 pairs of single‐nucleotide polymorphism sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Aglaoctenus lagotis, Costus pulverulentus, Costus scaber, Culex pipiens, Dascyllus marginatus, Lupinus nanus Benth, Phloeomyzus passerini, Podarcis muralis, Rhododendron rubropilosum Hayata var. taiwanalpinum and Zoarces viviparus. These loci were cross‐tested on the following species: Culex quinquefasciatus, Rhododendron pseudochrysanthum Hay. ssp. morii (Hay.) Yamazaki and R. pseudochrysanthum Hayata. This article also documents the addition of 48 sequencing primer pairs and 90 allele‐specific primers for Engraulis encrasicolus.

Intraspecific facilitation by allelochemical mediated grazing protection within a toxigenic dinoflagellate population.

Dinoflagellates are a major cause of harmful algal blooms (HABs), with consequences for coastal marine ecosystem functioning and services. Alexandrium fundyense (previously Alexandrium tamarense) is one of the most abundant and widespread toxigenic species in the temperate Northern and Southern Hemisphere and produces paralytic shellfish poisoning toxins as well as lytic allelochemical substances. These bioactive compounds may support the success of A. fundyense and its ability to form blooms. Here we investigate the impact of grazing on monoclonal and mixed set-ups of highly (Alex2) and moderately (Alex4) allelochemically active A. fundyense strains and a non-allelochemically active conspecific (Alex5) by the heterotrophic dinoflagellate Polykrikos kofoidii. While Alex4 and particularly Alex5 were strongly grazed by P. kofoidii when offered alone, both strains grew well in the mixed assemblages (Alex4 + Alex5 and Alex2 + Alex5). Hence, the allelochemical active strains facilitated growth of the non-active strain by protecting the population as a whole against grazing. Based on our results, we argue that facilitation among clonal lineages within a species may partly explain the high genotypic and phenotypic diversity of Alexandrium populations. Populations of Alexandrium may comprise multiple cooperative traits that act in concert with intraspecific facilitation, and hence promote the success of this notorious HAB species.

Growth and bioactive secondary metabolites of arctic Protoceratium reticulatum (Dinophyceae)

Harmful algal blooms are mainly caused by marine dinoflagellates and are known to produce potent toxins that may affect the ecosystem, human activities and health. Such events have increased in frequency and intensity worldwide in the past decades. Numerous processes involved in Global Change are amplified in the Arctic, but little is known about species specific responses of arctic dinoflagellates. The aim of this work was to perform an exhaustive morphological, phylogenetical and toxinological characterization of Greenland Protoceratium reticulatum and, in addition, to test the effect of temperature on growth and production of bioactive secondary metabolites. Seven clonal isolates, the first isolates of P. reticulatum available from arctic waters, were phylogenetically characterized by analysis of the LSU rDNA. Six isolates were further characterized morphologically and were shown to produce both yessotoxins (YTX) and lytic compounds, representing the first report of allelochemical activity in P. reticulatum. As shown for one of the isolates, growth was strongly affected by temperature with a maximum growth rate at 15°C, a significant but slow growth at 1°C, and cell death at 25°C, suggesting an adaptation of P. reticulatum to temperate waters. Temperature had no major effect on total YTX cell quota or lytic activity but both were affected by the growth phase with a significant increase at stationary phase. A comparison of six isolates at a fixed temperature of 10°C showed high intraspecific variability for all three physiological parameters tested. Growth rate varied from 0.06 to 0.19d-1, and total YTX concentration ranged from 0.3 to 15.0pg YTXcell-1 and from 0.5 to 31.0pgYTXcell-1 at exponential and stationary phase, respectively. All six isolates performed lytic activity; however, for two isolates lytic activity was only detectable at higher cell densities in stationary phase.

Bioactive compounds of marine dinoflagellate isolates from western Greenland and their phylogenetic association within the genus Alexandrium

The diversity and biogeography of populations of the toxigenic marine dinoflagellate genus Alexandrium, a major global cause of paralytic shellfish poisoning (PSP), are represented by only a few studies based upon a low number of cultured isolates and remain poorly described in Arctic and sub-Arctic waters. Multiple clonal isolates (n=22) of the Alexandrium tamarense species complex, and a single isolate of A. tamutum, were collected from the water column while on board an oceanographic expedition to the west coast of Greenland. After culturing of these isolates under controlled conditions, their phylogenetic affinities within the genus Alexandrium were characterized by sequence analysis of nuclear large sub-unit (LSU) rDNA. Based upon morphological and molecular genetic criteria, all isolates of the A. tamarense species complex were consistent with membership in the Group I ribotype (previously known as the North American ribotype). Phenotypic signatures were also analyzed based upon their respective profiles of paralytic shellfish toxins (PST) and allelochemical interactions against a target cryptophyte Rhodomonas, as determined by lytic potency. All isolates conforming to the A. tamarense Group I produced PST, but no toxins were detected in A. tamutum P2E2. Unusually, only carbamoyl toxins were produced among the A. tamarense Group I isolates from Greenland; sulfocarbamoyl derivatives, generally present in A. tamarense population from other locations, including the Arctic, North Pacific and North Atlantic, were absent from all isolates. Allelochemical activity, causing cell lysis of Rhodomonas, but generally being unrelated to cellular PST, was expressed by all A. tamarense isolates and also by A. tamutum, but varied widely in potency. Comparison of the genotypic (rDNA) and phenotypic (PST profile, allelochemical activity) characteristics of Greenland isolates with those of other Arctic populations reveals a complex pattern of intra-specific diversity. Estimation of diversity relationships is problematic because of the distinct patterns of divergence and lack of evidence of linkage among the alternative biomarkers and morphology. Nevertheless, such studies are necessary as the basis for constructing hindcasting scenarios and predicting changes in Alexandrium species distribution in the Arctic from the regional to the global scale.

Maculabatis ambigua sp. nov., a new whipray (Myliobatiformes: Dasyatidae) from the Western Indian Ocean

A new whipray, Maculabatis ambigua sp. nov., described from material collected from the Red Sea and off Zanzibar (Tanzania), is probably more widespread in the northwestern Indian Ocean. It has been confused with other Indian Ocean whiprays of the genus Maculabatis (formerly Himantura in part) i.e. M. gerrardi and M. randalli. Maculabatis ambigua sp. nov. was first distinguished from these species by molecular analysis, and subsequently by a combination of morphological characters, i.e. disc shape, coloration, morphometrics and squamation. Molecular data suggest that it is most closely related to the morphologically similar M. gerrardi, which occurs further east in the Indian Ocean (Oman to Indonesia) and North-West Pacific (north to Taiwan). The dorsal disc of M. gerrardi typically has a full or partial coverage of white spots (usually present at least on the posterior disc), whereas M. ambigua sp. nov. is plain coloured. Maculabatis randalli, which occurs in the Persian and Arabian Gulfs, is plain coloured, but has a longer disc relative to its width, more acute and longer snout, longer head and larger intergill width, wider internasal distance, and a narrower secondary denticle band in adults. Maculabatis ambigua sp. nov. is relatively common in the shallow, soft-sedimentary habitats of the southern Red Sea from where it is taken as low-value or discarded bycatch of trawl fisheries. It is a medium-sized whipray with a maximum confirmed size of 840 mm disc width.

Redescription of Cheilinus quinquecinctus Rüppell, 1835 (Pisces: Perciformes, Labridae), a valid endemic Red Sea wrasse

The labrid fish Cheilinus quinquecinctus Rüppell, originally described from the Red Sea, has long been regarded as a junior synonym of C. fasciatus (Bloch). Herein, both nominal species are redescribed, based on examination of the types and additional material from the Red Sea (for C. quinquecinctus) and the Indo-West Pacific (for C. fasciatus). Rüppells description of Cheilinus quinquecinctus was originally based on three syntypes, and the most representative adult specimen is designated as the lectotype. We show that Cheilinus quinquecinctus is restricted to the Red Sea and the Gulf of Aden, and it differs from the similar C. fasciatus in having modally fewer gill rakers on the first gill arch, a total of 13-16 (mean 13.9, usually 13 or 14 ) (vs. 13-16, mean 14.7, usually 14 or 15), in developing a ragged posterior margin of the caudal fin with age (versus only upper and lower caudal-fin lobes developing with age), and in its color pattern. The phylogenetic analysis of the COI barcoding region accords with the species status of C. quinquecinctus with the placement of the two sister species in two divergent and reciprocally monophyletic evolutionary lineages. A full description of C. quinquecinctus and diagnosis of C. fasciatus is provided here for comparison. In addition, the data include a table of the results of the meristic and morphological examination of type and additional specimens of both species from throughout their distribution ranges as well as a table of gill-raker counts of all examined specimens. Underwater color photographs are provided for comparison of juveniles, females and males of both species.

Redescription of the genus Koumansetta (Teleostei: Gobiidae), with description of a new species from the Red Sea

The gobiid genus Koumansetta Whitley, placed in synonymy by some authors with the similar genus Amblygobius Bleeker, is redescribed and its validity based on an integrated morphological and molecular assessment is confirmed. The following characters have been found that distinguish Koumansetta from any of 15 recognized valid species of Amblygobius: oculoscapular transverse rows trp and tra long, extending dorsally well above level of rows x1 and x2; snout pointed, prominent, longer than eye diameter, with gently sloping dorsal profile, overhanging mouth; mouth subterminal; the upper limb of first gill arch with 1-2 slender, weak and soft gill rakers anteriorly, followed by 1-5 short, also soft, broad structures; first two dorsal-fin spines elongate, remaining spines progressively shorter; pelvic frenum absent; body brown to brown-green in upper and lateral sides with narrow yellow or orange longitudinal stripes on body and head, black ocellated spot on the second dorsal fin, and another black spot dorsoposteriorly on caudal peduncle. The following three species are assigned to Koumansetta: K. rainfordi Whitley, the type species of the genus, known from the western Pacific Ocean; K. hectori (Smith), the most widespread species, known from islands of the western Indian Ocean to Micronesia and Fiji; and a new species, restricted to the Red Sea and the inner Gulf of Aden. Koumansetta hoesei sp. nov. has formerly been confused with similar K. hectori, but differs in various details of coloration, and in some morphological characters. Moreover, K. hoesei sp. nov. is evolutionary well divergent from K. rainfordi and K. hectori, its closest relative, as shown by phylogenetic analysis of the mitochondrial COI barcoding region. In addition to the description of the new species, brief species accounts are provided for K. hectori and K. rainfordi, and a key to the three species.

Redescription of the blacktip sea catfish Plicofollis dussumieri (Valenciennes) (Siluriformes: Ariidae), with a new record from the Red Sea and notes on the diversity and distribution of Plicofollis spp.

The ariid catfish Plicofollis dussumieri (Valenciennes) is redescribed in detail based on examination of the holotype and additional material from the Indian Ocean. Part of the material examined herein was collected by bottom trawl from sandy bottoms off Jizan, Saudi Arabia, and represents the first record of the species for the Red Sea. Plicofollis dussumieri is characterised in having 14–18 anal-fin rays; two pairs of palatal tooth plates bearing granular teeth; parietosupraoccipital process rhomboidal or oblong with straight lateral sides and usually emarginate apex; lateral ethmoid globular, prominent; anal-fin height 8.2–12.4% SL; and adipose fin dark distally. Examination of specimens exhibited sexual dimorphism in the species with greater predorsal distance, longer pelvic fins and pelvic-fin base in females. Ontogenetic changes were found in several characters: length of maxillary and mental barbels, anal-fin base, and adipose-fin base are becoming shorter and eye diameter smaller with growth. In addition to the detailed study of a representative number of specimens of P. dussumieri, the present study provides an identification key to the species of the genus, and a phylogenetic analysis of available mitochondrial gene sequences (cyt b and ATPase 8/6), including species not considered in previous molecular studies.

Review of Carangoides (Perciformes: Carangidae) from the Red Sea, with a new record of Imposter Trevally Carangoides talamparoides Bleeker, 1852

Ten species of Carangoides from the Red Sea are reviewed. Imposter Trevally, Carangoides talamparoides Bleeker, is reported from the Red Sea for the first time on the basis of four small specimens and three adults trawled off Jizan, southern Saudi Arabia. Previously known from the Gulf of Oman east to Guam, its distribution range is extended to the Red Sea. Carangoides talamparoides superficially resembles C. malabaricus and may be easily confused, but it differs generally in lower gill raker counts, 25–31 (vs. 32–38), longer snout, the length 10.0–13.6% fork length in adults (vs. snout shorter, 8.5–10.8% fork length in adults); and premaxilla with slightly concave anterodorsal margin laterally (vs. premaxilla with distinctly concave margin laterally); greenish yellow blotch dorsoposteriorly on orbit membrane (vs. no blotch on orbit membrane); and white tongue (vs. tongue mainly dark). Description is provided for Red Sea specimens of Carangoides talamparoides and brief accounts for nine other Red Sea congeners. A key and table are also provided to help distinguish Red Sea Carangoides species, and a molecular phylogenetic analysis of the COI barcoding region is presented for all available Red Sea species and other Indo-Pacific species of the genus Carangoides.