Tim C. S. Cox

Voxel similarity measures for 3-D serial MR brain image registration

The authors have evaluated eight different similarity measures used for rigid body registration of serial magnetic resonance (MR) brain scans. To assess their accuracy the authors used 33 clinical three-dimensional (3-D) serial MR images, with deformable extradural tissue excluded by manual segmentation and simulated 3-D MR images with added intensity distortion. For each measure the authors determined the consistency of registration transformations for both sets of segmented and unsegmented data. They have shown that of the eight measures tested, the ones based on joint entropy produced the best consistency. In particular, these measures seemed to be least sensitive to the presence of extradural tissue. For these data the difference in accuracy of these joint entropy measures, with or without brain segmentation, was within the threshold of visually detectable change in the difference images.

Registration of MR and CT images for skull base surgery using point-like anatomical features

We have developed a registration technique for combining magnetic resonance imaging (MRI) and computed tomography (CT) images of the skull base for use in surgical planning. The technique is based on user identification of point-like landmarks visible in both modalities. The combination of images involves a small amount of expert interaction, is relatively quick and preliminary evaluation indicates that it is accurate to within 1.5 mm. Registered or fused images can be viewed either on an image processing workstation, or fused images can be printed onto conventional film for convenience in clinical use. We present one patient in order to demonstrate the techniques indications and advantages.

Intensity-based 2-D - 3-D registration of cerebral angiograms

We propose a new method for aligning three-dimensional (3-D) magnetic resonance angiography (MRA) with 2-D X-ray digital subtraction angiograms (DSA). Our method is developed from our algorithm to register computed tomography volumes to X-ray images based on intensity matching of digitally reconstructed radiographs (DRRs). To make the DSA and DRR more similar, we transform the MRA images to images of the vasculature and set to zero the contralateral side of the MRA to that imaged with DSA. We initialize the search for a match on a user defined circular region of interest. We have tested six similarity measures using both unsegmented MRA and three segmentation variants of the MRA. Registrations were carried out on images of a physical neuro-vascular phantom and images obtained during four neuro-vascular interventions. The most accurate and robust registrations were obtained using the pattern intensity, gradient difference, and gradient correlation similarity measures, when used in conjunction with the most sophisticated MRA segmentations. Using these measures, 95% of the phantom start positions and 82% of the clinical start positions were successfully registered. The lowest root mean square reprojection errors were 1.3 mm (standard deviation 0.6) for the phantom and 1.5 mm (standard deviation 0.9) for the clinical data sets. Finally, we present a novel method for the comparison of similarity measure performance using a technique borrowed from receiver operator characteristic analysis.

Diagnosis and management of benign intracranial hypertension

Benign intracranial hypertension (BIH) is a headache syndrome characterised by (1) raised cerebrospinal fluid (CSF) pressure in the absence of an intracranial mass lesion or ventricular dilatation; (2) normal spinal fluid composition; (3) usually normal findings on neurological examination except for papilloedema and an occasional VI nerve palsy; and (4) normal level of consciousness. The appellation “benign” means not fatal. The syndrome can, however, disrupt normal life and cause significant visual failure. It is an uncommon condition in childhood presenting about once or twice a year in a large referral hospital. Early recognition is important as timely intervention may preserve vision and enables the doctor to start the appropriate treatment to control headaches. Children as young as 4 months can be affected; sex distribution is equal.1 2 Which intracranial compartment is primarily responsible for raising CSF pressure in the absence of ventricular dilatation is still unclear. Theories of BIH pathophysiology have been based on neuroradiological studies on patients with BIH (computed tomograms, magnetic resonance imaging (MRI), magnetic resonance diffusion scans, and radioisotope cisternography) and CSF hydrodynamic studies. These include increased venous sinus pressure, decreased spinal fluid absorption, increased spinal fluid secretion, increased blood volume, and brain oedema.3 4 Since the first large report on childhood BIH in 1967, reports subsequently show a changing clinical picture over time in terms of possible aetiology and clinical presentation.5 6Diagnosis is not always simply achieved. BIH can occur in the absence of papilloedema; a “normal resting” CSF pressure does not exclude the diagnosis in the presence of suggestive symptoms and signs.7 8 Review of our cases over the past 10 years confirms the wide clinical spectrum of this condition. Of the 22 cases seen, 15 presented with the classical picture of headaches, papilloedema, and a raised CSF pressure of …

Measures of folding applied to the development of the human fetal brain

Previous work has suggested the existence of differences between the cerebral cortex of normal individuals, and those of patients with diseases such as epilepsy and schizophrenia. These shape abnormalities may be of developmental origin. Improved shape measures could provide useful tools for neuroscience research and patient diagnosis. We consider the theoretically desirable properties of measures of brain shape. We have implemented seven measures, three from the neuroscience literature, and four new to this field. Three of the measures are zero-order and four are second-order with respect to the surface. We validate the measures using simple geometrical shapes, and a collection of magnetic resonance scans of ten histologically normal ex vivo fetal brains with gestational ages from 19-42 weeks. We then apply the measures to MR scans from two histologically abnormal ex vivo brains. We demonstrate that our implementation of the measures is sensitive to anatomical variability rather than to the discreteness of the image data. All the measures were sensitive to changes in shape during fetal development. Several of the measures could distinguish between the normal and abnormal fetal brains. We propose a multivariate approach to studying the shape of the cerebral cortex, in which both zero-order and second-order measures are used to quantify folding.

Cyclosporine-related reversible posterior leukoencephalopathy: MRI

Abstract Three patients aged 48, 11 and 40 years, two of whom were recent recipients of renal transplants and one of a bone marrow transplant, developed seizures, with cortical blindness in two cases. All were immunosuppressed with cyclosporine and were hypertensive at the onset of symptoms. MRI showed predominantly posterior signal changes in all three cases. The abnormalities were more conspicuous on fast FLAIR images than on conventional T2-weighted spin-echo images.

Interictal regional slow activity in temporal lobe epilepsy correlates with lateral temporal hypometabolism as imaged with 18FDG PET : neurophysiological and metabolic implications

OBJECTIVES The phenomenon of interictal regional slow activity (IRSA) in temporal lobe epilepsy and its relation with cerebral glucose metabolism, clinical data, MRI, and histopathological findings was studied. METHODS Interictal18F-fluorodeoxyglucose positron emission tomography (FDG PET) was performed under continuous scalp EEG monitoring in 28 patients with temporal lobe epilepsy not associated with intracranial foreign tissue lesions, all of whom subsequently underwent resective surgery. Regions of interest (ROIs) were drawn according to a standard template. IRSA was considered lateralised when showing a 4:1 or greater ratio of predominance on one side. RESULTS Sixteen patients (57%) had lateralised IRSA which was always ipsilateral to the resection and of maximal amplitude over the temporal areas. Its presence was significantly related to the presence of hypometabolism in the lateral temporal neocortex (p=0.0009). Logistic regression of the asymmetry indices for all measured cerebral regions confirmed a strong association between IRSA and decreased metabolism of the posterior lateral temporal neocortex only (p=0.009). No significant relation could be shown between slow activity and age at onset, duration of the epilepsy, seizure frequency, and MRI evidence for hippocampal atrophy. Furthermore, IRSA was not specifically related to mesial temporal sclerosis or any other pathology. CONCLUSIONS Interictal regional slowing in patients with temporal lobe epilepsy not associated with a mass lesion is topographically related to the epileptogenic area and therefore has a reliable lateralising, and possibly localising, value. Its presence is irrelevant to the severity or chronicity of the epilepsy as well as to lateral deactivation secondary to neuronal loss in the mesial temporal structures. Although slow EEG activity is generally considered as a non-specific sign of functional disturbance, interictal regional slowing in temporal lobe epilepsy should be conceptualised as a distinct electrographic phenomenon which is directly related to the epileptogenic abnormality. The strong correlation between interictal regional slowing and lateral temporal hypometabolism suggests in turn that the second may delineate a field of reduced neuronal inhibition which can receive interictal and ictal propagation.

A comparison of a similarity-based and a feature-based 2-D-3-D registration method for neurointerventional use

Two-dimensional (2-D)-to-three-dimensional (3-D) registration can improve visualization which may aid minimally invasive neurointerventions. Using clinical and phantom studies, two state-of-the-art approaches to rigid registration are compared quantitatively: an intensity-based algorithm using the gradient difference similarity measure; and an iterative closest point (ICP)-based algorithm. The gradient difference approach was found to be more accurate, with an average registration accuracy of 1.7 mm for clinical data, compared to the ICP-based algorithm with an average accuracy of 2.8 mm. In phantom studies, the ICP-based algorithm proved more reliable, but with more complicated clinical data, the gradient difference algorithm was more robust. Average computation time for the ICP-based algorithm was 20 s per registration, compared with 14 min and 50 s for the gradient difference algorithm.

Dural sinus thrombosis

SummaryMagnetic resonance imaging has been reported to have advantages over conventional angiography in the diagnosis of dural sinus thrombosis. A case report is presented describing the application of MR techniques including MR angiography, to diagnose and monitor therapy for dural sinus thrombosis.

Stereo Augmented Reality in the Surgical Microscope

This paper describes the MAGI (microscope-assisted guided interventions) augmented-reality system, which allows surgeons to view virtual features segmented from preoperative radiological images accurately overlaid in stereo in the optical path of a surgical microscope. The aim of the system is to enable the surgeon to see in the correct 3-D position the structures that are beneath the physical surface. The technical challenges involved are calibration, segmentation, registration, tracking, and visualization. This paper details our solutions to these problems. As it is difficult to make reliable quantitative assessments of the accuracy of augmented-reality systems, results are presented from a numerical simulation, and these show that the system has a theoretical overlay accuracy of better than 1 mm at the focal plane of the microscope. Implementations of the system have been tested on volunteers, phantoms, and seven patients in the operating room. Observations are consistent with this accuracy prediction.