Tim Stangner
Leipzig University
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Publication
Featured researches published by Tim Stangner.
Journal of Physics: Condensed Matter | 2011
Christof Gutsche; Mahdy M. Elmahdy; K Kegler; Ilya Semenov; Tim Stangner; Oliver Otto; Olaf Ueberschär; Ulrich F. Keyser; M Krueger; Markus Rauscher; Rudolf Weeber; Jens Harting; Yong Woon Kim; Vladimir Lobaskin; R R Netz; Friedrich Kremer
Optical tweezers are experimental tools with extraordinary resolution in positioning (± 1 nm) a micron-sized colloid and in the measurement of forces (± 50 fN) acting on it-without any mechanical contact. This enables one to carry out a multitude of novel experiments in nano- and microfluidics, of which the following will be presented in this review: (i) forces within single pairs of colloids in media of varying concentration and valency of the surrounding ionic solution, (ii) measurements of the electrophoretic mobility of single colloids in different solvents (concentration, valency of the ionic solution and pH), (iii) similar experiments as in (i) with DNA-grafted colloids, (iv) the nonlinear response of single DNA-grafted colloids in shear flow and (v) the drag force on single colloids pulled through a polymer solution. The experiments will be described in detail and their analysis discussed.
Soft Matter | 2011
Carolin Wagner; David Singer; Olaf Ueberschär; Tim Stangner; Christof Gutsche; Ralf Hoffmann; Friedrich Kremer
Optical tweezers-assisted dynamic force spectroscopy (DFS) is employed to investigate specific receptor/ligand interactions on the level of single binding events. Here, the specific binding of two anti-human tau monoclonal antibodies (mAbs), HPT-110 and HPT-104, to synthetic tau-peptides with different phosphorylation patterns is analyzed. The specificity of HPT-110 to the tau-peptide containing a phosphorylation at Ser235 and of HPT-104 to the tau-peptide containing a phosphorylation at Thr231 is confirmed. Additionally, our approach allows for a detailed characterization of the unspecific interactions that are observed between HPT-104 and the peptide phosphorylated only at Ser235 and between HPT-110 and the peptide phosphorylated only at Thr231. By analyzing the measured rupture-force distributions it is possible to separate unspecific from specific interactions. Thereby for the latter characteristic parameters like the lifetime of the bond without force τ0, the characteristic length xts and the free energy of activation ΔG are determined. The results are in accordance with conventional ELISA tests but offer a much more refined insight.
ACS Nano | 2013
Tim Stangner; Carolin Wagner; David Singer; Stefano Angioletti-Uberti; Christof Gutsche; Joachim Dzubiella; Ralf Hoffmann; Friedrich Kremer
Optical tweezers-assisted dynamic force spectroscopy is employed to investigate specific receptor-ligand interactions on the level of single binding events. In particular, we analyze binding of the phosphorylation-specific monoclonal antibody (mAb) HPT-101 to synthetic tau-peptides with two potential phosphorylation sites (Thr231 and Ser235), being the most probable markers for Alzheimers disease. Whereas the typical interpretation of enzyme-linked immunosorbent assay (ELISA) suggests that this monoclonal antibody binds exclusively to the double-phosphorylated tau-peptide, we show here by DFS that the specificity of only mAb HPT-101 is apparent. In fact, binding occurs also to each sort of monophosphorylated peptide. Therefore, we characterize the unbinding process by analyzing the measured rupture force distributions, from which the lifetime of the bond without force τ0, its characteristic length xts, and the free energy of activation ΔG are extracted for the three mAb/peptide combinations. This information is used to build a simple theoretical model to predict features of the unbinding process for the double-phosphorylated peptide purely based on data on the monophosphorylated ones. Finally, we introduce a method to combine binding and unbinding measurements to estimate the relative affinity of the bonds. The values obtained for this quantity are in accordance with ELISA, showing how DFS can offer important insights about the dynamic binding process that are not accessible with this common and widespread assay.
Journal of Optics | 2011
Carolin Wagner; Tim Stangner; Christof Gutsche; Olaf Ueberschär; Friedrich Kremer
An optical tweezers setup with optical detection in three dimensions and active height regulation has been developed. The presented novel method to determine the relative height of a microparticle from its microscopic image is based on the analysis of the integrated light intensity of the main maximum of the diffraction pattern. After the determination of a master curve as reference, the height can be detected with an accuracy of up to 2?nm. The method is applicable under microscopic white light illumination and is simple to implement. As an example of measurements where active height regulation is indispensable, force?distance curves are discussed. Furthermore, the colloid height is calculated geometrically. In the range where the geometrical estimation provides reliable results, the values are found to be in quantitative agreement with the suggested algorithm.
Physical Biology | 2013
Tim Stangner; David Singer; Carolin Wagner; Christof Gutsche; Olaf Ueberschär; Ralf Hoffmann; Friedrich Kremer
By combining optical tweezers-assisted dynamic force spectroscopy experiments with fluorescence activated cell sorting (FACS), we demonstrate a new approach to reducing the data variance in measuring receptor-ligand interactions on a single molecule level by ensuring similar coating densities. Therefore, the carboxyfluorescein-labelled monophosphorylated peptide tau226-240[pThr231] is anchored on melamine resin beads and these beads are sorted by FACS to achieve a homogeneous surface coverage. To quantify the impact of the fluorescence dye on the bond parameters between the phosphorylated peptide and the corresponding phosphorylation specific anti-human tau monoclonal antibody HPT-104, we perform dynamic force spectroscopy and compare the results to data using unsorted beads covered with the non-fluorescence peptide analogue. Finally, we demonstrate that the data variance of the relative binding frequency is significantly decreased by a factor of 3.4 using pre-sorted colloids with a homogeneous ligand coating compared to using unsorted colloids.
Physical Biology | 2015
Tim Stangner; Stefano Angioletti-Uberti; Daniel Knappe; David Singer; Carolin Wagner; Ralf Hoffmann; Friedrich Kremer
By combining enzyme-linked immunosorbent assay (ELISA) and optical tweezers-assisted dynamic force spectroscopy (DFS), we identify for the first time the binding epitope of the phosphorylation-specific monoclonal antibody (mAb) HPT-101 to the Alzheimers disease relevant peptide tau[pThr231/pSer235] on the level of single amino acids. In particular, seven tau isoforms are synthesized by replacing binding relevant amino acids by a neutral alanine (alanine scanning). From the binding between mAb HPT-101 and the alanine-scan derivatives, we extract specific binding parameters such as bond lifetime τ0, binding length x(ts), free energy of activation ΔG (DFS) and affinity constant K(a) (ELISA, DFS). Based on these quantities, we propose criteria to identify essential, secondary and non-essential amino acids, being representative of the antibody binding epitope. The obtained results are found to be in full accord for both experimental techniques. In order to elucidate the microscopic origin of the change in binding parameters, we perform molecular dynamics (MD) simulations of the free epitope in solution for both its parent and modified form. By taking the end-to-end distance d(E-E) and the distance between the α-carbons d(C-C) of the phosphorylated residues as gauging parameters, we measure how the structure of the epitope depends on the type of substitution. In particular, whereas d(C-C) is sometimes conserved between the parent and modified form, d(E-E) strongly changes depending on the type of substitution, correlating well with the experimental data. These results are highly significant, offering a detailed microscopic picture of molecular recognition.
Optics and Lasers in Engineering | 2012
Olaf Ueberschär; Carolin Wagner; Tim Stangner; Christof Gutsche; Friedrich Kremer
Polymer | 2011
Olaf Ueberschär; Carolin Wagner; Tim Stangner; Christof Gutsche; Friedrich Kremer
Polymer | 2011
Olaf Ueberschär; Carolin Wagner; Tim Stangner; Konstanze Kühne; Christof Gutsche; Friedrich Kremer
Polymer | 2012
Olaf Ueberschär; Matthias Krüger; Christof Gutsche; Tim Stangner; Carolin Wagner; Konstanze Kühne; Friedrich Kremer