Ting-Chi Wen

The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts

Taxonomic names are key links between various databases that store information on different organisms. Several global fungal nomenclural and taxonomic databases (notably Index Fungorum, Species Fungorum and MycoBank) can be sourced to find taxonomic details about fungi, while DNA sequence data can be sourced from NCBI, EBI and UNITE databases. Although the sequence data may be linked to a name, the quality of the metadata is variable and generally there is no corresponding link to images, descriptions or herbarium material. There is generally no way to establish the accuracy of the names in these genomic databases, other than whether the submission is from a reputable source. To tackle this problem, a new database (FacesofFungi), accessible at www.facesoffungi.org (FoF) has been established. This fungal database allows deposition of taxonomic data, phenotypic details and other useful data, which will enhance our current taxonomic understanding and ultimately enable mycologists to gain better and updated insights into the current fungal classification system. In addition, the database will also allow access to comprehensive metadata including descriptions of voucher and type specimens. This database is user-friendly, providing links and easy access between taxonomic ranks, with the classification system based primarily on molecular data (from the literature and via updated web-based phylogenetic trees), and to a lesser extent on morphological data when molecular data are unavailable. In FoF species are not only linked to the closest phylogenetic representatives, but also relevant data is provided, wherever available, on various applied aspects, such as ecological, industrial, quarantine and chemical uses. The data include the three main fungal groups (Ascomycota, Basidiomycota, Basal fungi) and fungus-like organisms. The FoF webpage is an output funded by the Mushroom Research Foundation which is an NGO with seven directors with mycological expertise. The webpage has 76 curators, and with the help of these specialists, FoF will provide an updated natural classification of the fungi, with illustrated accounts of species linked to molecular data. The present paper introduces the FoF database to the scientific community and briefly reviews some of the problems associated with classification and identification of the main fungal groups. The structure and use of the database is then explained. We would like to invite all mycologists to contribute to these web pages.

Towards a natural classification and backbone tree for Sordariomycetes

Sordariomycetes is one of the largest classes of Ascomycota and is characterised by perithecial ascomata and inoperculate unitunicate asci. The class includes many important plant pathogens, as well as endophytes, saprobes, epiphytes, and fungicolous, lichenized or lichenicolous taxa. The class includes freshwater, marine and terrestrial taxa and has a worldwide distribution. This paper provides an updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class. Based on phylogeny and morphology we introduced three subclasses; Diaporthomycetidae, Lulworthiomycetidae and Meliolomycetidae and five orders; Amplistromatales, Annulatascales, Falcocladiales, Jobellisiales and Togniniales. The outline is based on literature to the end of 2014 and the backbone tree published in this paper. Notes for 397 taxa with information, such as new family and genera novelties, novel molecular data published since the Outline of Ascomycota 2009, and new links between sexual and asexual genera and thus synonymies, are provided. The Sordariomycetes now comprises six subclasses, 28 orders, 90 families and 1344 genera. In addition a list of 829 genera with uncertain placement in Sordariomycetes is also provided.

Families of Sordariomycetes

Sordariomycetes is one of the largest classes of Ascomycota that comprises a highly diverse range of fungi characterized mainly by perithecial ascomata and inoperculate unitunicate asci. The class includes many important plant pathogens, as well as endophytes, saprobes, epiphytes, coprophilous and fungicolous, lichenized or lichenicolous taxa. They occur in terrestrial, freshwater and marine habitats worldwide. This paper reviews the 107 families of the class Sordariomycetes and provides a modified backbone tree based on phylogenetic analysis of four combined loci, with a maximum five representative taxa from each family, where available. This paper brings together for the first time, since Barrs’ 1990 Prodromus, descriptions, notes on the history, and plates or illustrations of type or representative taxa of each family, a list of accepted genera, including asexual genera and a key to these taxa of Sordariomycetes. Delineation of taxa is supported where possible by molecular data. The outline is based on literature to the end of 2015 and the Sordariomycetes now comprises six subclasses, 32 orders, 105 families and 1331 genera. The family Obryzaceae and Pleurotremataceae are excluded from the class.

Optimization of Large-Scale Culture Conditions for the Production of Cordycepin with Cordyceps militaris by Liquid Static Culture

Cordycepin is one of the most important bioactive compounds produced by species of Cordyceps sensu lato, but it is hard to produce large amounts of this substance in industrial production. In this work, single factor design, Plackett-Burman design, and central composite design were employed to establish the key factors and identify optimal culture conditions which improved cordycepin production. Using these culture conditions, a maximum production of cordycepin was 2008.48 mg/L for 700 mL working volume in the 1000 mL glass jars and total content of cordycepin reached 1405.94 mg/bottle. This method provides an effective way for increasing the cordycepin production at a large scale. The strategies used in this study could have a wide application in other fermentation processes.

Notes on the genus Yunnantettix Zheng (Tetrigidae: Cladonotinae), with descriptions of two new species from Thailand

Two new species, Yunnantettix nanensis sp. nov. and Yunnantettix variabilis sp. nov. are described from Thailand, and current knowledge on their ecology and habits are presented. Generic characteristics of Yunnantettix are updated according to all known species, and a precise key to all known species of the genus is given. Yunnantettix and its allied genera are compared, which clarifies diagnostically valuable characters. Morphology of the wings covered by pronotum is analyzed.

Taxonomy of Paragavialidium (Orthoptera: Tetrigidae: Scelimeninae) with Description of One New Species and Notes on Ecology and Habits

ABSTRACT: Ecology and habits of the genus Paragavialidium are discussed. Paragavialidium islandium Zha and Wen sp. nov. is described and illustrated with photographs and compared with similar taxa. A taxonomic review of the genus Paragavialidium is provided and a key to total 12 species of Paragavialidium is given.

Cordycepin and N6-(2-Hydroxyethyl)-Adenosine from Cordyceps pruinosa and Their Interaction with Human Serum Albumin

Cordyceps pruinosa (CP) is often used as Traditional Chinese Medicine, but the substance basis of its medicinal properties is unclear. In this study, two compounds were isolated from CP cultures by column chromatography, and identified as cordycepin and N6-(2-hydroxyethyl)-adenosine (HEA) by Nuclear Magnetic Resonance. In order to understand the efficacy of these two substances as potential therapeutic agents, it is necessary to explore their binding with proteins. The molecular mechanisms of interaction between cordycepin, HEA and human serum albumin (HSA) were studied using UV and fluorescence spectroscopy. The bingding constants between HSA and cordycepin were 4.227, 3.573 and 3.076 × 103·at 17, 27 and 37°C respectively, and that of HSA and HEA were 27.102, 19.409 and 13.002 × 103·at the three tempretures respectively. Both cordycepin and HEA can quench the intrinsic fluorescence of HSA via static quenching, and they can bind with HSA to form complexes with a single binding site. The interaction forces between cordycepin and HSA were determined as electrostatic and hydrophobic, and those of HEA and HSA were hydrogen bonding and van der Waals forces. Using Fosters equation, the distance between fluorophores of cordycepin and HSA, and HEA and HSA are estimated to be 5.31 nm and 4.98 nm, respectively. In this study, cordycepin was isolated for the first time from CP, and will provide a new source of cordycepin and expand the use of this taxon. The interaction mechanisms between cordycepin and HSA was studied for the first time, which will provide a useful guide for the clinical application of cordycepin. The pharmacological importance of this study is to understand the interaction of HSA with cordycepin and HEA, which will be essential for the future designing of drugs based on the two compounds.

Taxonomy of Macromotettixoides with the description of a new species (Tetrigidae, Metrodorinae)

Abstract Descriptions of the flying organs and generic characteristics of the genus Macromotettixoides Zheng, Wei & Jiang are currently imprecise. Macromotettixoides is reviewed and compared with allied genera. A re-description is undertaken and a determination key is provided to Macromotettixoides. Macromotettixoides parvula Zha & Wen, sp. n. from the Guizhou Karst Region, China, is described and illustrated with photographs. Observations on the ecology and habits of the new species are recorded. Four current species of Hyboella Hancock are transferred to Macromotettixoides. Variations of the flying organs and tegminal sinus in the Tetrigidae are discussed, which will help to describe them accurately.

Species diversity of Tetrigidae (Orthoptera) in Guizhou, China with description of two new species

ABSTRACT Guizhou Province, located in southwest China, is famous for its wholly karst landforms, in which many pygmy locusts with poor dispersal ability have been isolated and preserved. Species diversity of Tetrigidae from Guizhou is introduced, which deals with six sub-families, 28 genera and 69 species, among them, 33 species are endemic to Guizhou. Two new species, Paragavialidum prominemarginatus Zha & Ding sp. nov. and Teredorus jinshaensis Zha & Ding sp. nov. are described and illustrated with photographs. Flatocerus chishuiensis, Flatocerus nigritibialis and Flatocerus nigrifemura are considered as synonyms of Flatocerus wuyishanensis. Flatocerus wuyishanensis is redescribed and photographed based on our collections. www.zoobank.org/urn:lsid:zoobank.org:pub:334D6268-E3C1-450E-A3A2-31F9839B4EE6

Records of Hedotettix and Teredorus in Thailand with the description of three new species (Orthoptera, Tetrigidae)

Abstract We are studying the fungi associated with insects in northern Thailand and as a result several rarely collected insect species have been uncovered. The genera Hedotettix with one new species and Teredorus with two new species are reported from Thailand. Hedotettix triangularis Zha & Hyde, sp. n., Teredorus chiangraiensis Zha & Hyde, sp. n. and Teredorus combfemorus Zha & Hyde, sp. n. are introduced, described and photographed and compared with other species. Keys to species of Hedotettix and Teredorus from Thailand are provided.