Tomohiro Yanagi

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

Cultivated strawberry (Fragaria x ananassa) is octoploid and shows allogamous behaviour. The present study aims at dissecting this octoploid genome through comparison with its wild relatives, F. iinumae, F. nipponica, F. nubicola, and F. orientalis by de novo whole-genome sequencing on an Illumina and Roche 454 platforms. The total length of the assembled Illumina genome sequences obtained was 698 Mb for F. x ananassa, and ∼200 Mb each for the four wild species. Subsequently, a virtual reference genome termed FANhybrid_r1.2 was constructed by integrating the sequences of the four homoeologous subgenomes of F. x ananassa, from which heterozygous regions in the Roche 454 and Illumina genome sequences were eliminated. The total length of FANhybrid_r1.2 thus created was 173.2 Mb with the N50 length of 5137 bp. The Illumina-assembled genome sequences of F. x ananassa and the four wild species were then mapped onto the reference genome, along with the previously published F. vesca genome sequence to establish the subgenomic structure of F. x ananassa. The strategy adopted in this study has turned out to be successful in dissecting the genome of octoploid F. x ananassa and appears promising when applied to the analysis of other polyploid plant species.

In vitro growth of Cymbidium plantlets cultured under superbright red and blue light-emitting diodes (LEDs)

SummaryThe effects of light generated by superbright blue and red LEDs on the growth of Cymbidium plantlets cultured in vitro have been studied. Leaf growth, chlorophyll content and shoot and root weights were affected by different LED irradiations. Red light promoted leaf growth but decreased chlorophyll content. This was reversed by blue light. The growth of Cymbidium plantlets in terms of increase in total shoot and root weights was comparable under red plus blue LEDs and the fluorescent systems. Generally, the response to different LED was similar for plantlets grown on sugar-free medium with or without CO2 enrichment and sugar-containing medium but without CO2 enrichment. The growth of Cymbidium plantlets was enhanced by CO2 enrichment. Our study demonstrates the effectiveness of a total irradiation system for Cymbidium plantlets growth in vitro. The significance of our findings in relation to the development of a suitable lighting system for plant tissue culture is discussed.

Decaploidy in Fragaria iturupensis (Rosaceae)

The strawberry genus, Fragaria (Rosaceae), has a base chromosome number of x = 7. Cultivated strawberries (F. ×ananassa nothosubsp. ananassa) are octoploid (2n = 8x = 56) and first hybridized from F. chiloensis subsp. chiloensis forma chiloensis × F. virginiana subsp. virginiana. Europe has no known native octoploid species, and only one Asian octoploid species has been reported: F. iturupensis, from Iturup Island. Our objective was to examine the chromosomes of F. iturupensis. Ploidy levels of wild strawberry species, include diploid (2n = 2x = 14), tetraploid (2n = 4x = 28), pentaploid (2n = 5x = 35), hexaploid (2n = 6x = 42), octoploid (2n = 8x = 56), and nonaploid (2n = 9x = 63). Artificial triploid (2n = 3x = 21), tetraploid, pentaploid, octoploid, decaploid (2n = 10x = 70), 16-ploid, and 32-ploid plants have been constructed and cultivated. Surprisingly, chromosome counts and flow cytometry revealed that F. iturupensis includes natural decaploid genotypes with 2n = 10x = 70 chromosomes. This report is the first of a naturally occurring decaploid strawberry species. Further research on F. iturupensis and exploration on northern Pacific islands is warranted to ascertain the phylogeny and development of American octoploid species.

Introgression of unique characteristics of floral initiation under 24 hour day-length of Fragaria chiloensis ‘CHI-24-1’ into F. × ananassa

A unique flower initiation of the wild Junebearing strawberry strain ‘CHI-24-1’ in Fragaria chiloensis occurs under 24 h DL and high temperature conditions. To introduce the floral initiation characteristics of ‘CHI-24-1’ into cultivated strawberries of F. × ananassa, a cross pollination was conducted between ‘CHI-24-1’ and the Japanese short-day type strawberry cultivar ‘Nyoho’. The floral initiation of ‘CHI-24-1’ was induced in both parent and daughter plants linked with runners under a 24 h DL and 23/20 ∘C, but not 8 and 16 h DLs at the same temperatures. Of the 21 F1 hybrids grown under the 24 h DL, 12 showed flower truss production in the parent and/or daughter plants linked with runners. Among 64 F1 hybrids, 26 exposed to 8, 16 and 24 h DLs for 30 days produced no flower trusses. However, 32, one and five F1 hybrids produced flower trusses under the 24 h DL alone, 8 h DL alone and both the 8 and 24 h DLs, respectively. The results of the experiments indicated that none of the F1 hybrids were day-neutral plants, but approximately 60% had the characteristics of floral initiation under 24 h DL, which was inherited from the pollen parent of ‘CHI-24-1’. The importance of the unique floral initiation characteristics under 24 h DL with high temperature for strawberry breeding was discussed.

CAPS DNA Marker Labeling Using Primed in Situ Hybridization Technique for Chromosome of Strawberry (Fragaria × ananassa Duch.)

ABSTRACT The cleavage amplified polymorphic sequence (CAPS) markers were developed to identify strawberry cultivars from unknown samples. These markers seemed to have a chromosome specificity. However, no reports confirmed it. The present study was conducted to verify the location of a CAPS marker on the chromosomes using a primed in situ (PRINS) technique. A CAPS marker was hybridized with the ‘Sachinoka’ chromosomes using the PRINS technique. The samples were observed under a fluorescence microscope. When the chromosomes were hybridized with the single marker, fluorescent signals were found on two chromosomes. From the results, the CAPS marker was confirmed to have a chromosome specificity by chromosome observation.