Tony Hadibarata

Biodegradation of chrysene, an aromatic hydrocarbon by Polyporus sp. S133 in liquid medium

Polyporus sp. S133, a fungus collected from contaminated-soil was used to degrade chrysene, a polycyclic aromatic hydrocarbon (PAH) in a mineral salt broth (MSB) liquid culture. Maximal degradation rate of chrysene (65%) was obtained when Polyporus sp. S133 was incubated in the cultures supplemented with polypeptone (10%) for 30 days under agitation of 120 rpm, as compared to just 24% degradation rate in non-agitated culture. Furthermore, the degradation of chrysene was affected by the addition of carbon and nitrogen sources as well as kind of surfactants. The degradation rate was increased with increase in added amount of carbon and nitrogen sources, respectively. The degradation rate in agitated cultures was enhanced about 2 times higher than that in non-agitated cultures. The degradation mechanism of chrysene by Polyporus sp. S133 was determined through identification of several metabolites; chrysenequinone, 1-hydroxy-2-naphthoic acid, phthalic acid, salicylic acid, protocatechuic acid, gentisic acid, and catechol. Several enzymes (manganese peroxidase, lignin peroxidase, laccase, 1,2-dioxygenase and 2,3-dioxygenase) produced by Polyporus sp. S133 were detected during the incubation. The highest enzyme activity was shown by 1,2-dioxygenase (237.5 U l(-1)) after 20 days of incubation.

Fate and cometabolic degradation of benzo(a)pyrene by white-rot fungus Armillaria sp. F022

Armillaria sp. F022, a white-rot fungus isolated from a tropical rain forest in Samarinda, Indonesia, was used to biodegrade benzo[a]pyrene (BaP). Transformation of BaP, a 5-ring polycyclic aromatic hydrocarbon (PAH), by Armillaria sp. F022, which uses BaP as a source of carbon and energy, was investigated. However, biodegradation of BaP has been limited because of its bioavailability and toxicity. Five cosubstrates were selected as cometabolic carbon and energy sources. The results showed that Armillaria sp. F022 used BaP with and without cosubstrates. A 2.5-fold increase in degradation efficiency was achieved after addition of glucose. Meanwhile, the use of glucose as a cosubstrate could significantly stimulate laccase production compared with other cosubstrates and not using any cosubstrate. The metabolic pathway was elucidated by identifying metabolites, conducting biotransformation studies, and monitoring enzyme activities in cell-free extracts. The degradation mechanism was determined through the identification of several metabolites: benzo[a]pyrene-1,6-quinone, 1-hydroxy-2-benzoic acid, and benzoic acid.

Identification of metabolites from benzo[a]pyrene oxidation by ligninolytic enzymes of Polyporus sp. S133

The biodegradation of benzo[a]pyrene (BaP) by using Polyporus sp. S133, a white-rot fungus isolated from oil-contaminated soil was investigated. Approximately 73% of the initial concentration of BaP was degraded within 30 d of incubation. The isolation and characterization of 3 metabolites by thin layer chromatography, column chromatography, and UV-vis spectrophotometry in combination with gas chromatography-mass spectrometry, indicated that Polyporus sp. S133 transformed BaP to BaP-1,6-quinone. This quinone was further degraded in 2 ways. First, BaP-1,6-quinone was decarboxylated and oxidized to form coumarin, which was then hydroxylated to hydroxycoumarin, and finally to hydroxyphenyl acetic acid by addition of an epoxide group. Second, Polyporus sp. S133 converted BaP-1,6-quinone into a major product, 1-hydroxy-2-naphthoic acid. During degradation, free extracellular laccase was detected with reduced activity of lignin peroxidase, manganese-dependent peroxidase and 2,3-dioxygenase, suggesting that laccase and 1,2-dioxygenase might play an important role in the transformation of PAHs compounds.

Potential of a white-rot fungus Pleurotus eryngii F032 for degradation and transformation of fluorene

The white-rot fungus Pleurotus eryngii F032 showed the capability to degrade a three fused-ring aromatic hydrocarbons fluorene. The elimination of fluorene through sorption was also investigated. Enzyme production is accompanied by an increase in biomass of P. eryngii F032 during degradation process. The fungus totally degraded fluorine within 23 d at 10-mg l(-1) solution. Fluorene degradation was affected with initial fluorene concentrations. The highest enzyme activity was shown by laccase in the 10-mg l(-1) culture after 30 d of incubation (1620 U l(-1)). Few activities of enzymes were observed in the fungal cell at the varying concentration of fluorene. Three metabolic were detected and separated in ethylacetate extract, after isolated by column chromatography. The metabolites, 9-fluorenone, phthalic acid, and benzoic acid were identified using UV-vis spectrophotometer and gas chromatography-mass spectrometry (GC-MS). The results show the presence of a complex mechanism for the regulation of fluorene-degrading enzymes.

Identification of naphthalene metabolism by white rot fungus Armillaria sp. F022

Armillaria sp. F022, a white rot fungus isolated from tropical rain forest (Samarinda, Indonesia) was used to biodegrade naphthalene in cultured medium. Transformation of naphthalene by Armillaria sp. F022 which is able to use naphthalene, a two ring-polycyclic aromatic hydrocarbon (PAH) as a source of carbon and energy was investigated. The metabolic pathway was elucidated by identifying metabolites, biotransformation studies and monitoring enzyme activities in cell-free extracts. The identification of metabolites suggests that Armillaria sp. F022 initiates its attack on naphthalene by dioxygenation at its C-1 and C-4 positions to give 1,4-naphthoquinone. The intermediate 2-hydroxybenzaldehyde and salicylic acid, and the characteristic of the meta-cleavage of the resulting diol were identified in the long-term incubation. A part from typical metabolites of naphthalene degradation known from mesophiles, benzoic acid was identified as the next intermediate for the naphthalene pathway of this Armillaria sp. F022. Neither phthalic acid, catechol and cis,cis-muconic acid metabolites were detected in culture extracts. Several enzymes (manganese peroxidase, lignin peroxidase, laccase, 1,2-dioxygenase and 2,3-dioxygenase) produced by Armillaria sp. F022 were detected during the incubation.

Correlation study between land use, water quality, and heavy metals (cd, pb, and zn) content in water and green lipped mussels perna viridis (linnaeus.) At the Johor Strait

In order to observe the variation in land use changes, satellite images from the Landsat Thematic Mapper (TM) and the Enhanced Thematic Mapper (ETM) for 1991, 2000, 2005, and 2008 were used to compare the differences between selected water quality parameters, including heavy metal (Cd, Pb, and Zn) content in both water and green mussels or Perna viridis (Linnaeus.) before and after the increase in land use activities beginning from 2006. The samples were collected at 11 points for water and 4 points for green mussels between the Second Link and the Causeway Link at the Johor Strait in 2009 and were analyzed for pH, temperature degrees Celsius), dissolved oxygen, ammoniacal nitrogen, and heavy metal (Cd, Pb, and Zn) content.

Biofiltration process as an ideal approach to remove pollutants from polluted air

AbstractMost developing and developed countries are facing the problems and challenges of air pollution. Many governments have enacted laws and policies to enforce industrial activities to reduce air contaminating emissions and are mainly carried out by installation of air pollution control systems. Therefore, the use of suitable technique such as biofiltration processes to control air pollutants is necessary. Although many studies have been published on the designing and operations of polluted air treatment using biofiltration processes but a comprehensive review on it is still lacking. Till now due to conceptual designing and operational knowledge, several cases of failure or sub-optimum designing has been reported about the use of biofiltration process to treat polluted air. This paper presents a comprehensive review of biofiltration processes and technology for the control of organic and inorganic pollutants as an ideal approach to remove pollutants from polluted air. It also covers classification, fu...

EFFECT OF ENVIRONMENTAL FACTORS IN THE DECOLORIZATION OF REMAZOL BRILLIANT BLUE R BY POLYPORUS SP. S133

The effects of environmental conditions such as pH, agitation, carbon and nitrogen sources, metal ion, salinity and phenolic compound on the decolorization of the anthraquinone type textile dyestuff Remazol Brilliant Blue R by white rot fungi, Polyporus sp. S133 were investigated. After extensive testing, the best performance took place at pH 4 and decolorization of the dye in liquid effluents was significantly increased by agitation. Compared to other carbon and nitrogen sources tested, glucose and ammonium tartrate gave rise to better decolorization performances. Decolorization of RBBR occurred in the presence of metal ions which are typically found in textile industry effluents. Of all the metal ions tested, Fe ++ was the most inhibiting of the decolorization. The effect of culture salinity on decolorization was also investigated. Under high-salt conditions, RBBR was also decolorized completely in 6 d. The presence of phenolic compounds inhibited the decolorization at a concentration of 1 mM, but protocatechuic acid showed no inhibition. The results indicate that possibly anthraquinone type dyes such as RBBR act as enzyme substrates that are directly oxidized by laccase.

A new electro-generated o-dianisidine derivative stabilized MWCNT-modified GCE for low potential gallic acid detection

The exploration of functional group interactions and electro-generated species stabilization on chemically modified electrodes for efficient electro-analytical application is a continuing research area in electrochemistry. In addition, the electrochemical behaviours of the intermediate species, which are generated from the aromatic organic redox mediator and possess both methoxy and amine functional groups, have been rarely studied for electro-analytical applications. For the first time, we report the stabilization of an electro-generated enone derivative of the o-dianisidine (EDo-D) dimer formed as one of the intermediate species during o-dianisidine immobilization. The electro-generated o-dianisidine derivative (o-DD)-stabilized multi-walled carbon nanotube (MWCNT)-modified glassy carbon electrode (GCE/o-DD@MWCNT) exhibited two highly reproducible and, well-defined surface-confined redox couples in a pH 7 phosphate buffer solution (PBS). FTIR analyses indicated the presence of an amine group linkage and an azo product in the o-DD@MWCNT hybrid. UV-Vis and GC-MS analyses confirmed the presence of o-dianisidine in its azo dimer form within the MWCNT. In addition, the enone derivative of the o-dianisidine dimer present on the GCE/o-DD@MWCNT successfully sensed gallic acid (GA) at 0.16 V vs. Ag/AgCl in pH 7 PBS. Highly selective GA detection was achieved with a sensitivity of 0.4580 μA μM−1, a detection range of 100–1300 μM and a detection limit of 144 nM using chronoamperometry. GCE/o-DD@MWCNT also demonstrated effective GA detection in simulated real grape juice and water samples.

Characterization of pyrene biodegradation by white‐rot fungus Polyporus sp. S133

A white‐rot fungus of Polyporus sp. S133 was isolated from an oil‐polluted soil. The metabolism of pyrene by this fungus was investigated in liquid medium with 5 mg of the compound. Depletion of pyrene was evident during the 30‐day growth period and was 21% and 90%, respectively, in cometabolism and metabolism of pyrene alone. Pyrene was absorbed to fungal cells or biodegraded to form simpler structural compounds. Seventy‐one percent of eliminated pyrene was transformed by Polyporus sp. S133 into other compounds, whereas only 18% was absorbed in the fungal cell. The effects of pH and temperature on biomass production of Polyporus sp. S133 for pyrene were examined; the properties of laccase and 1,2‐dioxygenase produced by Polyporus sp. S133 during pyrene degradation were investigated. The optimal values of pH were 3, 5, and 4 for laccase, 1,2‐dioxygenase, and biomass production, respectively, whereas the optimal values of temperature were 25 °C for laccase and 50 °C for 1,2‐dioxygenase and biomass production. Under optimal conditions, pyrene was mainly metabolized to 1‐hydroxypyrene and gentisic acid. The structure of 1‐hydroxypyrene and gentisic acid was determined by gas chromatography–mass spectrometry after identification using thin‐layer chromatography.