Toshio Yanagida
RIKEN Quantitative Biology Center
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Publication
Featured researches published by Toshio Yanagida.
PLOS ONE | 2013
Tomonobu M. Watanabe; Katsumi Imada; Keiko Yoshizawa; Masayoshi Nishiyama; Chiaki Kato; Fumiyoshi Abe; Takamitsu Morikawa; Miki Kinoshita; Hideaki Fujita; Toshio Yanagida
Fluorescent protein-based indicators for intracellular environment conditions such as pH and ion concentrations are commonly used to study the status and dynamics of living cells. Despite being an important factor in many biological processes, the development of an indicator for the physicochemical state of water, such as pressure, viscosity and temperature, however, has been neglected. We here found a novel mutation that dramatically enhances the pressure dependency of the yellow fluorescent protein (YFP) by inserting several glycines into it. The crystal structure of the mutant showed that the tyrosine near the chromophore flipped toward the outside of the β-can structure, resulting in the entry of a few water molecules near the chromophore. In response to changes in hydrostatic pressure, a spectrum shift and an intensity change of the fluorescence were observed. By measuring the fluorescence of the YFP mutant, we succeeded in measuring the intracellular pressure change in living cell. This study shows a new strategy of design to engineer fluorescent protein indicators to sense hydrostatic pressure.
生物物理 | 2014
Mitsuhiro Iwaki; Shelley Wickham; Keigo Ikezaki; Toshio Yanagida; William M. Shih
生物物理 | 2014
Keisuke Fujita; Mitsuhiro Iwaki; Lorenzo Marcucci; Rika Kawaguchi; Toshio Yanagida
生物物理 | 2014
Takamitsu Morikawa; Hiroaki Machiyama; Kazuko Okamoto; Keiko Yoshizawa; Hideaki Fujita; Taro Ichimura; Katsumi Imada; Takeharu Nagai; Toshio Yanagida; Tomonobu M. Watanabe
生物物理 | 2013
Mitsuhiro Iwaki; Keigo Ikezaki; Toshio Yanagida; William M. Shih
生物物理 | 2013
Takamitsu Morikawa; Keiko Yoshizawa; Hideaki Fujita; Katsumi Imada; Takeharu Nagai; Toshio Yanagida; Tomonobu M. Watanabe
生物物理 | 2013
Hiroaki Machiyama; Takamitsu Morikawa; Tomoyuki Yamaguchi; Toshio Yanagida; Tomonobu M. Watanabe; Hideaki Fujita
生物物理 | 2012
Takamitsu Morikawa; Katsumi Imada; Keiko Yoshizawa; Toshio Yanagida; Takeharu Nagai; Tomonobu M. Watanabe
生物物理 | 2012
Akihiro Kawamoto; Yusuke V. Morimoto; Takayuki Kato; Kelly T. Hughes; Toshio Yanagida; Keiichi Namba
生物物理 | 2012
Keigo Ikezaki; Tomotaka Komori; Toshio Yanagida