Tracey L. Rogers

Object-based and action-based visual perception in children with spina bifida and hydrocephalus

Children with spina bifida and hydrocephalus (SBH) have long been known to have difficulties with visual perception. We studied how children with SBH perform 12 visual perception tasks requiring object identification, multistable representations of visual space, or visually guided overt actions. Four tasks required object-based processing (visual constancy illusions, face recognition, recognition of fragmented objects, line orientation). Four tasks required the representation of visual space in egocentric coordinates (stereopsis, visual figure-ground identification, perception of multistable figures, egocentric mental rotation). Four tasks required the coupling of visual space to overt movement (visual pursuit, figure drawing, visually guided route finding, visually guided route planning). Effect sizes, measuring the magnitude of the difference between SBH children and controls, were consistently larger for action-based than object-based visual perception tasks. Within action-based tasks, effect sizes were large and roughly comparable for tasks requiring the representation of visual space and for tasks requiring visually guided action. The results are discussed in terms of the physical and brain problems of children with SBH that limit their ability to build effective situation models of space.

A new approach to the solution of the linear mixing model for a single isotope: application to the case of an opportunistic predator

Mixing models are used to determine diets where the number of prey items are greater than one, however, the limitation of the linear mixing method is the lack of a unique solution when the number of potential sources is greater than the number (n) of isotopic signatures +1. Using the IsoSource program all possible combinations of each source contribution (0–100%) in preselected small increments can be examined and a range of values produced for each sample analysed. We propose the use of a Moore Penrose (M-P) pseudoinverse, which involves the inverse of a 2×2 matrix. This is easily generalized to the case of a single isotope with (p) prey sources and produces a specific solution. The Antarctic leopard seal (Hydrurga leptonyx) was used as a model species to test this method. This seal is an opportunistic predator, which preys on a wide range of species including seals, penguins, fish and krill. The M-P method was used to determine the contribution to diet from each of the four prey types based on blood and fur samples collected over three consecutive austral summers. The advantage of the M-P method was the production of a vector of fractions f for each predator isotopic value, allowing us to identify the relative variation in dietary proportions. Comparison of the calculated fractions from this method with ‘means’ from IsoSource allowed confidence in the new approach for the case of a single isotope, N.

Mathematics skills in good readers with hydrocephalus.

Children with hydrocephalus have poor math skills. We investigated the nature of their arithmetic computation errors by comparing written subtraction errors in good readers with hydrocephalus, typically developing good readers of the same age, and younger children matched for math level to the children with hydrocephalus. Children with hydrocephalus made more procedural errors (although not more fact retrieval or visual-spatial errors) than age-matched controls; they made the same number of procedural errors as younger, math-level matched children. We also investigated a broad range of math abilities, and found that children with hydrocephalus performed more poorly than age-matched controls on tests of geometry and applied math skills such as estimation and problem solving. Computation deficits in children with hydrocephalus reflect delayed development of procedural knowledge. Problems in specific math domains such as geometry and applied math, were associated with deficits in constituent cognitive skills such as visual spatial competence, memory, and general knowledge.

Summer diet of leopard seals (Hydrurga leptonyx) in Prydz Bay, Eastern Antarctica

The diet of male and female leopard seals (Hydrurga leptonyx) was investigated in Prydz Bay, Eastern Antarctica. A total of 70 scats, 1 regurgitate and 3 stomach contents were collected, during the austral summer, between November 1999 and March 2002. Eight prey species were identified, including birds, mammals, fish and invertebrates. Adelie penguins (Pygoscelis adeliae) were the main prey item and crabeater seals (Lobodon carcinophagus), benthic and pelagic fish, amphipods and krill were found to supplement the diet. Cephalopods did not occur in the diet. Crabeater seals were still being captured well after weaning, and were found in the diet of both male and female leopard seals.

The Gut Bacterial Community of Mammals from Marine and Terrestrial Habitats

After birth, mammals acquire a community of bacteria in their gastro-intestinal tract, which harvests energy and provides nutrients for the host. Comparative studies of numerous terrestrial mammal hosts have identified host phylogeny, diet and gut morphology as primary drivers of the gut bacterial community composition. To date, marine mammals have been excluded from these comparative studies, yet they represent distinct examples of evolutionary history, diet and lifestyle traits. To provide an updated understanding of the gut bacterial community of mammals, we compared bacterial 16S rRNA gene sequence data generated from faecal material of 151 marine and terrestrial mammal hosts. This included 42 hosts from a marine habitat. When compared to terrestrial mammals, marine mammals clustered separately and displayed a significantly greater average relative abundance of the phylum Fusobacteria. The marine carnivores (Antarctic and Arctic seals) and the marine herbivore (dugong) possessed significantly richer gut bacterial community than terrestrial carnivores and terrestrial herbivores, respectively. This suggests that evolutionary history and dietary items specific to the marine environment may have resulted in a gut bacterial community distinct to that identified in terrestrial mammals. Finally we hypothesize that reduced marine trophic webs, whereby marine carnivores (and herbivores) feed directly on lower trophic levels, may expose this group to high levels of secondary metabolites and influence gut microbial community richness.

INDIVIDUAL VARIATION IN THE ACOUSTIC BEHAVIOUR OF THE ADULT MALE LEOPARD SEAL, HYDRURGA LEPTONYX

Vocalisations and vocalising bouts of adult male leopard seals recorded from the Prydz Bay region, East Antarctica, were compared to determine whether they showed individual variability. There were distinct individual patterns in the sequence of vocalisations within vocalising bouts. A sequence could be reliably ascribed to a particular individual with a high degree (83%) of certainty. Such sequences may carry information about the identity of the caller. Acoustic characteristics of the two most commonly used vocalisations, the high and low double trills, showed weak within individual variation. Although differences were observed among individuals in the high double trill few were observed in the low double trill consequently the low double trills of some individuals could not be reliably ascribed to any particular seal. For many species, individual variation occurs in acoustic characteristics of specific vocalisations rather than in the sequence in which the vocalisations are produced. The acoustic displays of solitary species such as the leopard seal, are constrained by the difficulties of detecting and recognising the signal at a distance. Vocalisation sequences may be less adversely affected by signal degradation and so could be effective for communicating information over distance. It has been suggested that individual acoustic variation is found primarily in gregarious species however findings from the current study suggest that solitary animals using long-range underwater acoustic displays may convey individual variability in their vocalising sequence patterns.

Density Can Be Misleading for Low-Density Species: Benefits of Passive Acoustic Monitoring

Climate-induced changes may be more substantial within the marine environment, where following ecological change is logistically difficult, and typically expensive. As marine animals tend to produce stereotyped, long-range signals, they are ideal for repeatable surveying. In this study we illustrate the potential for calling rates to be used as a tool for determining habitat quality by using an Antarctic pack-ice seal, the leopard seal, as a model.With an understanding of the vocal behavior of a species, their seasonal and diurnal patterns, sex and age-related differences, an underwater passive-acoustic survey conducted alongside a visual survey in an arc of 4,225 km across the Davis Sea, Eastern Antarctica, showed that while acoustic and visual surveys identified similar regions as having high densities, the acoustic surveys surprisingly identified the opposite regions as being ‘critical’ habitats. Density surveys of species that cannot be differentiated into population classes may be misleading because overall density can be a negative indicator of habitat quality.Under special circumstances acoustics can offer enormous advantage over traditional techniques and open up monitoring to regions that are remote, difficult and expensive to work within, no longer restricting long-term community assessment to resource-wealthy communities. As climatic change affects a broad range of organisms across geographic boundaries we propose that capitalizing on the significant advances in passive acoustic technology, alongside physical acoustics and population modeling, can help in addressing ecological questions more broadly.

ESTIMATING BODY MASS AND CONDITION OF LEOPARD SEALS BY ALLOMETRICS

Abstract Leopard seals (Hydrurga leptonyx) are formidable marine predators and require sedation before scientific examination. Mass-specific drug dosage for leopard seals has usually been determined from generic allometric equations or visual estimates. However, the leopard seal is a slender phocid and generic equations are likely to return inaccurate mass estimates, which may lead to fatal overdoses of drugs. We used published and unpublished morphometric data to construct allometric models for estimating leopard seal body mass. The model using volume (Vol), which combined measures of snout-tail length (STL) and the square of girth (G2), provided our best estimate of mass (r2 = 0.97). The model using STL alone was sample-site specific (each r2 = 0.85), highlighting G as an important measure to obtain where possible. The confidence and prediction intervals associated with each model broadened with increased seal size and decreased sample size, suggesting the use of extra caution when estimating drug dosage for larger seals to avoid over- or under-dosing. We also developed a seal body condition index that can assist wildlife management when deciding if rehabilitation of vagrant seals is warranted. Body condition may also affect the induction, duration and recovery times of anaesthetized leopard seals.

The marine mammal microbiome: current knowledge and future directions

Marine mammals are globally significant because of their sensitivity to environmental change and threatened status, often serving as ‘ecosystem sentinels’. Disease is a major cause of marinemammal population decline and the role of the microbiome in disease has generated considerable interest. Recent research in humans has greatly enhanced our understanding of how the host-associated microbial community, the microbiome, affects host health. In this review, we provide an overview of the extent of the marine mammal microbiome with a focus on whole community characterisation using genomic methods. This research highlights the overlap in microbial communities between geographically distinct species and populations of marine mammals, suggesting tight links betweenmarinemammals and their microbial symbionts over millions of years of evolution. An understanding of these links in both healthy and compromised hosts is essential to identifying at-risk populations and making ecologically appropriate management decisions. We advocate further development of innovative sampling and analytic techniques that advance the field of microbial ecology of marine mammals. Recent investigations have highlighted the capacity of the microbiome to act strongly and significantly in maintaining host health with a vital role in disease manifestation and immune system function. Members of the microbial community can directly influence the progression of a disease via infection and also modulate the host’s own immune system regulation and response. Indeed thehost’smicrobial partners areessential to immunesystem function. Themicrobiome has been observed to be species-specific in a variety of vertebrate hosts and is influenced by host phylogeny, as a result ofmillionsof yearsof co-evolution.Marinemammals represent unique evolutionary lineages and investigations into their associated microbes will provide a deeper understanding of their ecology and evolution.

Estimates of abundance and apparent survival of coastal dolphins in Port Essington harbour, Northern Territory, Australia

Abstract Context. Three dolphin species occur in coastal waters of monsoonal northern Australia: the Australian snubfin (Orcaella heinsohni), humpback (Sousa sp.) and the bottlenose (Tursiops sp.). Their overall population size and trends are poorly known, and their conservation status has been difficult to resolve, but can be expected to deteriorate with likely increased development pressures. Aims. We sought to provide an estimate of abundance, and apparent survival, of the three dolphin species at the largely undeveloped harbour of Port Essington (325 km2), Northern Territory, with repeated sampling over a 2.9-year period. Given increasing obligations to undertake population assessments for impact studies at proposed development sites, we assess the strengths and limitations of a systematic sampling program. Methods. We used photo-identification data collected during systematic boat-based transect surveys undertaken from 2008 to 2010 and Pollock’s robust capture–recapture design model. Key results. Total abundance estimates for the three species were variable across different sampling periods. The estimated number of individuals in the sampled area varied per sampling episode from 136 (s.e. 62) to 222 (s.e. 48) for snubfin, from 48 (s.e. 7) to 207 (s.e. 14) for humpbacks and from 34 (s.e. 6) to 75 (s.e. 9) for bottlenose dolphins. Apparent survival was estimated for snubfin at 0.81 (s.e. 0.11), humpbacks at 0.59 (s.e. 0.12) and bottlenose at 0.51 (s.e. 0.17) per annum. Key conclusions. (1) The values derived here provide some of the only estimates of local population size for these species across monsoonal northern Australia; (2) population-size estimates varied considerably among seasons or sampling episodes; (3) the low apparent survival probabilities indicated that many individuals may move at scales larger than the study area; (4) density of snubfin and humpback dolphins in the present study area exceeded the few other estimates available for these species elsewhere in Australia. Implications. The present study provided the first baseline estimates of abundance and apparent survival for three coastal dolphin species in monsoonal northern Australia. Such information is becoming increasingly important as development pressures intensify in coastal areas. Sampling protocols for future monitoring and impact assessment need an enhanced consideration of seasonality and scale issues.