Tsong-Shin Lim

Mass production and dynamic imaging of fluorescent nanodiamonds.

Fluorescent nanodiamond is a new nanomaterial that possesses several useful properties, including good biocompatibility, excellent photostability and facile surface functionalizability. Moreover, when excited by a laser, defect centres within the nanodiamond emit photons that are capable of penetrating tissue, making them well suited for biological imaging applications. Here, we show that bright fluorescent nanodiamonds can be produced in large quantities by irradiating synthetic diamond nanocrystallites with helium ions. The fluorescence is sufficiently bright and stable to allow three-dimensional tracking of a single particle within the cell by means of either one- or two-photon-excited fluorescence microscopy. The excellent photophysical characteristics are maintained for particles as small as 25 nm, suggesting that fluorescent nanodiamond is an ideal probe for long-term tracking and imaging in vivo, with good temporal and spatial resolution.

Real-time nanometer-vibration measurement with a self-mixing microchip solid-state laser.

Nanometer vibration analysis of a target has been demonstrated by a self-aligned optical feedback vibrometry technique that uses a laser-diode-pumped microchip solid-state laser. The laser output waveform, which was modulated through interference between a lasing field and an extremely weak (<- 100-dB) frequency-modulated (FM) feedback field, was analyzed by the Hilbert transformation to yield the vibration waveform of the target. Experimental signal characteristics have been reproduced by numerical simulations. Real-time vibration measurement has also been achieved with a simple FM demodulation circuit.

Quantifying the number of color centers in single fluorescent nanodiamonds by photon correlation spectroscopy and Monte Carlo simulation

The number of negatively charged nitrogen-vacancy centers (N-V)− in fluorescent nanodiamond (FND) has been determined by photon correlation spectroscopy and Monte Carlo simulations at the single particle level. By taking account of the random dipole orientation of the multiple (N-V)− fluorophores and simulating the probability distribution of their effective numbers (Ne), we found that the actual number (Na) of the fluorophores is in linear correlation with Ne, with correction factors of 1.8 and 1.2 in measurements using linearly and circularly polarized lights, respectively. We determined Na=8±1 for 28 nm FND particles prepared by 3 MeV proton irradiation.

Folding of Alternating Dialkylsilylene-Spaced Donor-Acceptor Copolymers: The Oligomer Approach

A series of oligmers with donor-acceptor pairs separated by diisopropylsilylene (iPr(2)Si) spacers, composed of monomer 4b, dimer 5, trimer 6, and tetramer 7, were synthesized to scrutinize the folding behavior. Monomer 4a with a dimethylsilylene (Me(2)Si) spacer was also prepared for comparison. The 4-aminostyrene moiety was used as the donor and the stilbene moiety as the acceptor. Both steady-state and time-resolved fluorescence spectroscopic measurement were made. Regardless of the substituents on the silicon atom, the emission spectra of 4a and 4b exhibit both local excited (LE) emission of the acceptor chromophore and emission from the charge-separated state (CT emission), which are similar to that of the corresponding Me(2)Si-spaced copolymer 2a with the same donor and acceptor chromophores, but different from that of the copolymer with the iPr(2)Si spacer 2b. Dimer 5 behaves like 4 and 2a. As the chain length of the oligomers increases, the emission properties of the higher homologues become prone to that of 2b. Thus, tetramer 7 exhibits emission from the charge-transfer complex, which is essentially same as that of 2b. Moreover, charge-transfer absorptions emerge in 6 and 7. These results suggest that the folding nature of oligomers approaches that of the corresponding polymer, as the degree of oligomerization increases, and the electronic interactions between adjacent donor-acceptor pairs are controlled by the steric effect of the substituents on the silicon atoms and concomitant amplification of the stabilizing energy by extending the distance of the folding structure.

Excited-State Backbone Twisting of Polyfluorene As Detected from Photothermal After-Effects

By means of time-resolved photoluminescence and photothermal techniques, after-effects from excited-state dynamics, energy migration, and conformational rearrangement of poly(9,9-di-n-octyl-2,7-fluorene) (PFO) and its homologues has been examined and interpreted with rotational potential maps from quantum mechanical calculations. Steady-state photoluminescence spectral changes and time-resolved photoluminescence measurements of oligofluorenes and PFO diluted in toluene suggest excited state ring torsion occurring within 30 ps of photoexitation. With all effects from internal conversion/intersystem crossing processes properly accounted for, we show that the conformational changes associated with this twisting motion can be quantitatively probed by means of photothermal methods. Results suggest mean torsion between neighboring fluorene units by ca. 40 degrees upon excitation, in agreement with the shift of rotational potential minimum from +/-40 degrees (and +/-140 degrees) in the ground state to +/-20 degrees (and +/-160 degrees) in the first excited singlet state according to results of quantum mechanical calculations.

Hydrogen-Bonding Induced Cooperative Effect on the Energy Transfer in Helical Polynorbornenes Appended with Porphyrin-Containing Amidic Alanine Linkers

Polynorbornenes appended with porphyrins containing a range of different linkers are synthesized. The use of bisamidic chiral alanine linkers between the pending porphyrins and the polymeric backbone has been shown to bring the adjacent porphyrin chromophores to more suitable orientation for exciton coupling owing to hydrogen bonding between the adjacent linkers. The hydrogen bonding between the adjacent pendants in these polymers may induce a cooperative effect and therefore render single-handed helical structures for these polymers. Such a cooperative effect is reflected in the enhancement of FRET efficiencies between zinc-porphyrin and free base porphyrin in random copolymers.

Coherently Aligned Porphyrin‐Appended Polynorbornenes

Six different kinds of coherently aligned porphyrin-appended polynorbornenes derived from 5,6-endo-fused N-arylpyrrolidenonorbornenes have been synthesized. Pi-pi interactions between the pendant groups are essential for dictating the photophysical properties of the polymers and the mechanism for the stereoselective formation of polymers. Splitting of the Soret band of polymers 2a-c, which have alkyl-substituted porphyrin pendant groups, suggests strong exciton coupling between chromophores. No splitting of the Soret band is observed for polymers 2d-f, which have tetraaryl substituents on the porphyrin moiety. Significant fluorescence quenching is found in polymers 2a-e, whereas only slightly reduced quantum yield is observed for 2f. Time-resolved fluorescence measurements also indicate a similar trend. The AFM image of 2d on graphite shows aggregation to form a two-dimensional, ordered pattern.

Thioflavin T and Its Photoirradiative Derivatives: Exploring Their Spectroscopic Properties in the Absence and Presence of Amyloid Fibrils

In this work, we found that, during storage or after UV irradiation, ThT is demethylated or oxidized, forming three derivatives. These three derivatives were purified by high performance liquid chromatography and characterized by mass and nuclear magnetic resonance spectroscopy and the spectroscopic properties of pure ThT and the derivatives carefully compared. Our results show that the emission peak at 450 nm results from oxidized ThT and not from the monomeric form of ThT, as previously proposed. The partial conversion of ThT into oxidized and demethylated derivatives has an effect on amyloid detection using ThT assay. Irradiated ThT has the same lag time as pure ThT in the amyloidogenesis of insulin, but the intensity of the emitted fluorescence is significantly decreased.

Controlling Conformations in Alternating Dialkylsilylene‐Spaced Donor–Acceptor Copolymers by a Cooperative Thorpe–Ingold Effect and Polymer Folding

A series of dialkylsilylene-spaced copolymers 6 and 7, which contain Me(2)Si and iPr(2)Si spacer groups, respectively, and have alternating donor and acceptor chromophores, have been designed and regioselectively synthesized by hydrosilylation. The ratio of the donor and acceptor chromophores for each repeat unit is 2:1, and the two donor chromophores are linked by a trimethylene bridge. A 4-aminostyrene moiety is used as the donor and a series of acceptor chromophores with different reduction potentials are employed. Both steady-state and kinetic measurements reveal that the photoinduced electron transfer (PET) in 6 obeyed the Marcus theory in which normal and inverted regions are observed. On the other hand, the iPr(2)Si-spaced copolymers 7 exhibit absorption and emission from the charge-transfer complexes exclusively due to ground-state interactions between the donor and acceptor chromophores. The discrepancy in photophysical behavior may have arisen from the difference in distance between the adjacent donor and acceptor chromophores. The bulkiness of the substituents on the silicon atom (i.e., Me versus iPr) may exert the Thorpe-Ingold effect on the local conformation around the silicon atom. The differences in the small energetic barriers for each of the conformational states may be amplified by extending the distance of the folding structure, which results in perturbing the conformation of the polymers. These results suggest that the electronic interactions between adjacent donor-acceptor pairs in these copolymers are controlled by the synchronization of the substitution effect and corresponding polymeric structures.

Strategy for efficient site-specific FRET-dye labeling of ubiquitin.

To study conformational changes within a single protein molecule, sp-FRET (single pair fluorescence resonance energy transfer) is an important technique to provide distance information. However, incorporating donor and acceptor dyes into the same protein molecule is not an easy task. Here, we report a strategy for the efficient double-labeling of a protein on a solid support. An ubiquitin mutant with two Cys mutations, one with high solvent accessibility and the other with low solvent accessibility, was constructed. The protein was bound to magnetic beads and reacted with the dyes. The first dye reacted with the side-chain of the Cys with the high solvent accessibility and the second with the other Cys under partially denaturing conditions. Using this method, we can easily label two dyes in a site-specific way on ubiquitin with a satisfied yield. The labeling sites for donor and acceptor dyes can be easily swapped.