Tu-Chen Cheng

Alteromonas prolidase for organophosphorus G-agent decontamination

Enzymes catalyzing the hydrolysis of highly toxic organophosphorus compounds (OPs) are classified as organophosphorus acid anhydrolases (OPAA; EC 3.1.8.2). Recently, the genes encoding OPAA from two species of Alteromonas were cloned and sequenced. Sequence and biochemical analyses of the cloned genes and enzymes have established Alteromonas OPAAs to be prolidases (E.C. 3.4.13.9), a type of dipeptidase hydrolyzing dipeptides with a prolyl residue in the carboxyl-terminal position (X-Pro). Alteromonas prolidases hydrolyze a broad range of G-type chemical warfare (CW) nerve agents. Efforts to over-produce a prolidase from A. sp.JD6.5 with the goal of developing strategies for long-term storage and decontamination have been successfully achieved. Large-scale production of this G-agent degrading enzyme is now feasible with the availability of an over-producing recombinant cell line. Use of this enzyme for development of a safe and non-corrosive decontamination system is discussed.

Screening of halophilic bacteria and Alteromonas species for organophosphorus hydrolyzing enzyme activity.

Previously, a G-type nerve agent degrading enzyme activity was found in a halophilic bacterial isolate designated JD6.5. This organism was tentatively identified as an unknown species of the genus Alteromonas. In order to determine whether this type of enzyme activity was common in other species of Alteromonas, a screening program was initiated. A number of Alteromonas species and five halophilic bacterial isolates were cultured and their crude cell extracts screened for hydrolytic activity against several organophosphorus chemical agents and other related compounds. The samples were also screened for cross-reactivity with a monoclonal antibody raised against the purified enzyme from JD6.5 and for hybridization with a DNA probe based on its N-terminal amino acid sequence A wide spectrum of activities and reactivities were seen, suggesting a significant heterogeneity between the functionally similar enzymes that are present in these bacterial species. Enzymes of the type described here have considerable potential for the decontamination and demilitarization of chemical warfare agents.

Substrate and stereochemical specificity of the organophosphorus acid anhydrolase from Alteromonas sp. JD6.5 toward p-nitrophenyl phosphotriesters

The enzyme OPAA hydrolyzes p-nitrophenyl phosphotriesters bearing substituents at the phosphorus center ranging in size from methyl to phenyl. The enzyme exhibits stereoselectivity toward the hydrolysis of chiral substrates with a preference for the Sp enantiomer.

Hydrolysis of acetylcholinesterase inhibitors--organophosphorus acid anhydrolase enzyme immobilization on photoluminescent porous silicon platforms.

We report on the immobilization of an OPAA enzyme on luminescent porous silicon devices, and on the utilization of this new platform to hydrolyze p-nitrophenyl-soman.

Identification of anthrax-specific signature sequence from Bacillus anthracis

The primary objective was to identify and clone novel chromosomal DNA fragments for use as B. anthracis-specific markers. Towards this goal, 300 random primers (RAPD technology, randomly amplified polymorphic DNA) were screened to identify polymorphic loci on the anthrax chromosome. Five such DNA fragments uniquely amplifying from anthrax chromosome were identified and isolated. These fragments were cloned in pCR vector and sequenced. Database (genebank) analysis of one of the cloned probe, VRTC899, revealed the presence of specific chromosomal DNA probe, Ba813 from anthrax. This prove also contains flanking DNA with no homology to known sequences. Availability of signature DNA probes for detection of antrax-causing agent in environmental samples is critical for field application of DNA-based sensor technologies. In conclusion, we have demonstrated application of RAPD technology for identification of anthrax-specific signature sequences. This strategy can be extended to identify signature sequences from other BW agents.

Development of a Hybrid Enzyme-Based Porous Silicon Platform for Chemical Warfare Agent Detection

The goal of our research is to combine porous silicon and enzymes in order to build hybrid platforms for extremely selective chemical sensing applications. For this, a new synthetic route to covalently anchor bio-molecules on photo-luminescent porous silicon (PL PSi) while preserving the optical properties of the matrix was developed. The hydride terminated porous silicon surface was covalently functionalized with t -butyloxycarbonyl protected amine by light-assisted hydrosysilation. Protein cross-linker chemistry was then used to extend the linker and immobilize various enzymes. The glu-coronidase enzyme/ p -nitro-phenyl-beta-glucoronide substrate test system provided a proof of concept for an enzyme-based porous silicon detector. The enzymatic activity and the luminescence of the porous silicon platform were both retained after the functionali-zation procedure and, charge transfer between the products of the enzymatic breakdown and the silicon quantum dots was demonstrated. The organophosphorous hydrolase enzyme OPAA was then immobilized and tested on p -nitrophenyl-soman, a surrogate substrate for soman. The production of the hydrolysis product, p -nitrophenol, correlated with the reversible luminescence quenching of the porous silicon matrix demonstrating the relevance of the enzyme-based platform for detection applications. This detection scheme, although indirect, takes advantage of the extreme specificity of enzymes. The approach is general and can be implemented for a series of target molecules.