U. S. N. Murty

Brief Communication: Classification and identification of mosquito species using artificial neural networks

An artificial neural network method is presented for classification and identification of Anopheles mosquito species based on the internal transcribed spacer2 (ITS2) data of ribosomal DNA string. The method is implemented in two different multi-layered feed-forward neural network model forms, namely, multi-input single-output neural network (MISONN) and multi-input multi-output neural network (MIMONN). A number of data sequences in varying sizes of different Anopheline malarial vectors and their corresponding species coding are employed to develop the neural network models. The classification efficiency of the network models for untrained data sequences is evaluated in terms of quantitative performance criteria. The results demonstrate the efficiency of the neural network models to extract the genetic information in ITS2 sequences and to adapt to new data. The method of MISONN is found to exhibit superior performance over MIMONN in distinguishing and identification of the mosquito vectors.

In silico characterization of Shikimate Kinase of Shigella flexneri: A potential drug target

Shigella flexneri is a major pathogen responsible for Shigellosis causing massive morbidity among young population and imposes huge socio-economic burden. In this study, Shikimate Kinase (SK) from S. flexneri was characterized in silico and disordered regions were predicted. Motifs and domains were calculated using computational tools. A three dimensional model of Shikimate Kinase of S.flexneri was constructed using Shikimate Kinase of E.coli (PDBID: 1KAG_A) as template by comparative modeling approach. Molecular dynamics calculations were carried out to check the stable conformation embedded in water sphere with least RMSD possible. Perusal of backbone conformation of the modeled structure by PROCHECK revealed that more than 98% of the residues fell in the allowed regions and ERRAT results confirmed good quality of modeled structure. Active site and its important residues were predicted for the derived model. Disulphide bridges were estimated by computational method and most probable pattern of cysteine residues was found in the pairs 8–22. Results of this study will shed light on the structural aspects of Shikimate Kinase of S. flexneri and will aid in rational drug designing.

Keratin protein property based classification of mammals and non-mammals using machine learning techniques

Keratin protein is ubiquitous in most vertebrates and invertebrates, and has several important cellular and extracellular functions that are related to survival and protection. Keratin function has played a significant role in the natural selection of an organism. Hence, it acts as a marker of evolution. Much information about an organism and its evolution can therefore be obtained by investigating this important protein. In the present study, Keratin sequences were extracted from public data repositories and various important sequential, structural and physicochemical properties were computed and used for preparing the dataset. The dataset containing two classes, namely mammals (Class-1) and non-mammals (Class-0), was prepared, and rigorous classification analysis was performed. To reduce the complexity of the dataset containing 56 parameters and to achieve improved accuracy, feature selection was done using the t-statistic. The 20 best features (parameters) were selected for further classification analysis using computational algorithms which included SVM, KNN, Neural Network, Logistic regression, Meta-modeling, Tree Induction, Rule Induction, Discriminant analysis and Bayesian Modeling. Statistical methods were used to evaluate the output. Logistic regression was found to be the most effective algorithm for classification, with greater than 96% accuracy using a 10-fold cross validation analysis. KNN, SVM and Rule Induction algorithms also were found to be efficacious for classification.

Comparative Chemical Characterization of Pigmented and Less Pigmented Cell Walls of Alternaria tenuissima

Alternaria tenuissima, the parasitic fungus, was obtained from the pruned upper-cut surfaces of mulberry stems. This fungus contains dark pigment because of the presence of melanin in the cell wall. To obtain less-pigmented cell walls, this fungus was grown under dark condition. When the pigmented and less-pigmented cell walls were chemically analyzed, no differences were observed in amino-acid composition, hexoses, or pentoses. However, in pigmented cell walls, higher contents of melanin (2.6%) were found than in less-pigmented cell walls (0.3%). Interestingly, a significant difference was observed in the relative fatty-acid compositions between these two types of cell walls. Among the major fatty acids, there were increased concentrations of tetradecanoic acid (C14:0), hexadecanoic acid (C16:0), 9-hexadecenoic acid (C16: 1,Δ9), and 9-octadecanoic acid (C18:1,Δ9) and a concomitant decrease in 9,12-octadecadienoic acid (C18:2,Δ9,12) in less-pigmented compared with pigmented cell walls. This difference in fatty-acid composition may be related to the higher percentage of melanin in the pigmented than the less-pigmented cell walls. Lesser amounts of 9,12-octadecadienoic acid in less-pigmented cell walls may have been caused by the growth of the fungus under environmental stress conditions. An interesting observation was the presence in pigmented cell walls only of methyl-substituted fatty acids with carbon numbers C14 to C17, but their occurrence could not be ascertained in the present study.

Synthesis and antimicrobial screening of some novel chalcones and flavanones substituted with higher alkyl chains

Abstract As a part of our program to generate some novel flavonoid frameworks substituted with higher alkyl groups as possible antimicrobial agents, we have in total synthesized twelve novel chalcones (11–16) and their corresponding flavanones (17–22) substituted with either nonyl or dodecyl chains in ring B in very good to excellent yields. The synthesized compounds have been screened for their antimicrobial potential against six bacterial and four fungal strains. The tested compounds, in general, showed significant antibacterial and comparable antifungal activities. While the chalcone (16) with a dodecyl chain showed highly promising antibacterial activity against almost all the organisms tested, the chalcone (13) with nonyl chain showed promising antifungal activity against Candida rugosa and Aspergillus niger strains.

CsF–Celite catalyzed facile N-alkylation of 2(3H)-benzoxazolones and antimicrobial properties of 2-substituted benzoxazole and 3-substituted-2(3H)-benzoxazolone derivatives

The synthesis and antimicrobial activity studies of a new series of cyclic amine containing benzoxazoles and benzoxazolone-2(3H)-ones derivatives were described. The alkylation of benzoxazolone was carried out using cesium fluoride–Celite. The newly synthesized compounds with the influence of the induction of the cyclic amine moiety in the benzoxazole scaffold have been evaluated with respect to the antibacterial and antifungal activity. The 2-cyclic amine-1,3-benzoxazoles (5a–l), 5-chloro-3-alkyl substituted-1,3-benzoxazol-2(3H)-ones (8a–f), and 3-[3-(cyclic amine)propyl]-1,3-benzoxazol-2(3H)-ones (9a–f) were synthesized. These derivatives were tested for antibacterial and antifungal activity. Among the compounds tested, 8c and 9f showed moderate to good antibacterial and antifungal activity. Compound 8a showed good antifungal activity.

Screening Strains of the Mulberry Silkworm, Bombyx mori, for Thermotolerance

Abstract A tropical climate prevails in most of the sericultural areas in India, where temperature increases during the summer lead to adverse effects on temperate bivoltine silkworm rearing and cause crop losses. Screening for thermotolerance in the silkworm, Bombyxmori L. (Lepidoptera: Bombycidae) is an essential prerequisite for the development of thermotolerant breeds/hybrids. In the current study, the aim was to identify potential bivoltine silkworm strains specific for tolerance to high temperature. The third day of fifth stage silkworm larvae of bivoltine strains were subjected to high temperature of 36 ± 1° C with RH of 50 ± 5 % for six hours (10:00–16:00) every day until spinning for three consecutive generations. Highly significant differences were found among all genetic traits of bivoltine silkworm strains in the treated groups. Three groups of silkworm resulted including susceptible, moderately tolerant, and tolerant by utilizing pupation rate or survival rate with thermal stress as the index for thermotolerance. Furthermore, based on the overall silkworm rearing performance of nine quantitative genetic traits such as larval weight, cocoon yield by number and weight, pupation, single cocoon and shell weight, shell ratio, filament length and denier, three bivoltine silkworm strains, BD2-S, SOF-BR and BO2 were developed as having the potential for thermotolerance. The data from the present study enhance knowledge for the development of thermo tolerant silkworm breeds/ hybrids and their effective commercial utilization in the sericulture industry.

Synergism between wild-type Bacillus thuringiensis subsp. israelensis and B. sphaericus strains: A study based on isobolographic analysis and histopathology

Prevention is the best resistance management strategy in integrated vector control programs. Combined use of insecticides of different classes that interact synergistically and show multi-site actions within the insect is recognized as a potential key strategy to be implemented even before the onset of resistance. The present study is aimed at harvesting the benefits of synergism between the wild-type Bacillus thuringiensis subsp. israelensis-H14 (Bti) and Bacillus sphaericus-2362 (Bs) strains by evaluating six different combinations of mixtures toxic to Aedes and Culex mosquito larvae. Isobolographic analysis was performed to distinguish the synergistic combinations of Bti and Bs, followed by determination of the degree of synergism through synergy and improvement factors. Furthermore, the speed of activity of Bs when combined with Bti is studied by histopathological investigations on the fate of midgut muscles of mosquito larvae upon exposure to individual wild-type strains as well as their mixtures.