Ugo Santosuosso

Tracking the invasion of the alien fruit pest Drosophila suzukii in Europe

Biological invasions are a leading threat to native wildlife, human health and food production worldwide. Understanding the invasion history helps identifying introduction pathways and organizing integrated management strategies especially aimed at avoiding multiple reintroductions. We coupled a recently developed spatial analysis (Geographic profiling) with trade flows quantification to identify the most likely spreading centre of a recent invader of Europe, the spotted wing drosophila, Drosophila suzukii. This polyphagous vinegar fly recently colonized western countries, where it is heavily threatening fruit production causing severe economic losses. Characterized by a rapid spread and a huge impact, the invasion of this pest has a few precedents and it is becoming a model in invasion biology and pest management. Thanks to our spatial approach based on data presence of D. suzukii in European countries in the very first years of it spread, we update the current knowledge of a first spread in Spain and Italy, suggesting on the contrary that the South of France may be the most likely spreading centre of D. suzukii in Europe. Estimates of propagule pressure (fresh host fruits importation) support this finding as imports from contaminated South East Asian countries are higher in France than in Spain or Italy. Our study provides a first step in the comprehension of invasion history of this pest species and emphasizes geographic profiling as an efficient technique to track down invaders colonization patterns.

Tracking the origin of the invading Caulerpa (Caulerpales, Chlorophyta) with Geographic Profiling, a criminological technique for a killer alga

The application of the Geographic Profiling technique (with the “Rossmo formula”) proved to be effective in assessing the spreading origin of invading species of Caulerpa in the Mediterranean. Geoprofiling is a technique more frequently used in criminology. We applied this method to an algal invasion for the first time. The method was calibrated with the distribution data of Caulerpa taxifolia, whose spreading in the Mediterranean Sea started from the aquarium of Monaco. This is the first time that Geographic Profiling is calibrated on a data set of sites of presence of a biological invader, of which the spreading origin is known. The application on Caulerpa racemosa var. cylindracea showed that the probable spreading center of the alga should be located in Western Sicily for the Mediterranean and in the southern part of Tenerife for the Canary Islands (Las Galletas, a fishing village). The spreading centers correspond to areas with ports, indicating that the spreading of this alga should be related to (fishing) boats. This result confirmed the opinion of other authors. The parameters used in the Rossmo Formula, obtained through calibration with the known origin of C. taxifolia invasion for identifying the origin of the spread of C. racemosa var. cylindracea may be extended to other algae with similar propagation mode and similar habitat requirements.

Methods for geographic profiling of biological invasions with multiple origin sites

Geographic profiling is a method that proved to be useful also in order to investigate the point of origin of a biological invasion. K-means clustering and Voronoi diagrams can partition a data set of geographic positions of populations invading a defined area and are, therefore, useful in cases in which an invasion had more introduction events as points of origin. One critical point of the method is to identify the right number of clusters in which to divide the starting data set formed by groups of points on a map. The Silhouette method proved to be capable of identifying the best number of subsets (clusters) of the general set of observations by providing different values for different subdivisions of the set of observations in clusters. For each cluster, the corresponding Voronoi tessellation was built on the starting map. To test the method, we did a simulation of clusters of data (points) on a map and we verified whether the proposed methods worked efficiently with the simulated data set with hundred repeats and using a varying number of clusters on the same map. The used techniques revealed to be efficient in finding the highest probability area of the map that would include the starting points for each cluster. A case study consisted in a known data set, that is, the spreading pattern of Caulerpa racemosa var. cylindracea (sea grapes), that was compatible (highest probability) with an original point of introduction in southern Italy and long distance (thousands of kilometers) secondary spreads via anthropic dispersal. The proposed techniques may also be applied to other kinds of data sets of biological data distributed on a map or in general on a geometrical surface.

Hepato-systemic gradient of carbon monoxide in cirrhosis☆

BACKGROUND AND AIMS Experimental data suggest that in liver cirrhosis splanchnic and systemic vasculature exhibit marked endothelial Carbon monoxide (CO) overproduction, while recent data demonstrated heme oxygenase (HO) hyperactivity in the liver of rats with cirrhosis. No data are so far available on CO levels in the hepatic veins of cirrhotic patients. We aimed at evaluating whether plasma CO levels differ between systemic (peripheral vein) and hepatic (hepatic vein) circulation in patients with viral cirrhosis with and without ascites. METHODS We enrolled 31 consecutive non-smoking in- or outpatients with liver cirrhosis. We measured wedge (occluded, WHVP) and free hepatic venous pressures (FHVP) and hepatic-vein pressure gradient (HVPG) was the calculated. Plasma level of NO and plasma CO concentration were determined both in peripheral vein and in the hepatic vein in cirrhotics. RESULTS In cirrhotic patients plasma CO levels were significantly higher in the hepatic vein (16.66±10.71 p.p.m.) than in the peripheral vein (11.71±7.00 p.p.m). Plasma NO levels were significantly higher in peripheral vein (97.02±21.11 μmol/ml) than in the hepatic vein (60.76±22.93 μmol/ml). CONCLUSIONS In patients with liver cirrhosis we documented a hepato-systemic CO gradient as inferred by the higher CO values in the hepatic vein than in the peripheral vein. In cirrhotic patients, CO and NO exhibit opposite behavior in the liver, while both molecules show increased values in the systemic circulation. It can be speculated that increased intra-hepatic CO levels might represent a counterbalancing response to reduced NO intra-hepatic levels in human liver cirrhosis.

Type 1 diabetes, sport practiced, and ankle joint mobility in young patients: What is the relationship?

It is known that patients with diabetes can develop limited joint mobility (LJM) and that this can depend on the metabolic control maintained and the duration of the disease. The aims of this study were to verify the presence of ankle joint mobility (AJM) deficits in both plantar and dorsiflexion in young type 1 diabetic patients (T1D) considering also the possible role of sport practiced as a further factor, able to modify AJM.

Morphological and Functional Characterization of IL-12Rβ2 Chain on Intestinal Epithelial Cells: Implications for Local and Systemic Immunoregulation

Interaction between intestinal epithelial cells (IECs) and the underlying immune systems is critical for maintaining intestinal immune homeostasis and mounting appropriate immune responses. We have previously showed that the T helper type 1 (TH1) cytokine IL-12 plays a key role in the delicate immunological balance in the gut and the lack of appropriate levels of IL-12 had important consequences for health and disease, particularly with regard to food allergy. Here, we sought to understand the role of IL-12 in the regulation of lymphoepithelial cross talk and how this interaction affects immune responses locally and systemically. Using a combination of microscopy and flow cytometry techniques we observed that freshly isolated IECs expressed an incomplete, yet functional IL-12 receptor (IL-12R) formed solely by the IL-12Rβ2 chain that albeit the lack of the complementary IL-12β1 chain responded to ex vivo challenge with IL-12. Furthermore, the expression of IL-12Rβ2 on IECs is strategically located at the interface between epithelial and immune cells of the lamina propria and using in vitro coculture models and primary intestinal organoids we showed that immune-derived signals were required for the expression of IL-12Rβ2 on IECs. The biological relevance of the IEC-associated IL-12Rβ2 was assessed in vivo in a mouse model of food allergy characterized by allergy-associated diminished intestinal levels of IL-12 and in chimeric mice that lack the IL-12Rβ2 chain on IECs. These experimental models enabled us to show that the antiallergic properties of orally delivered recombinant Lactococcus lactis secreting bioactive IL-12 (rLc-IL12) were reduced in mice lacking the IL-12β2 chain on IECs. Finally, we observed that the oral delivery of IL-12 was accompanied by the downregulation of the production of the IEC-derived proallergic cytokine thymic stromal lymphopoietin (TSLP). However, further analysis of intestinal levels of TSLP in IL-12Rβ2−/− mice suggested that this event was not directly linked to the IEC-associated IL-12Rβ2 chain. We interpreted these data as showing that IEC-associated IL12Rβ2 is a component of the cytokine network operating at the interface between the intestinal epithelium and immune system that plays a role in immune regulation.

The use of jackknifing for the evaluation of geographic profiling reliability

Abstract The use of geographic profiling (GP), based on “Rossmos formula”, a technique derived from criminology, has been previously proven to be effective in assessing the origin of invading species. The application on Caulerpa taxifolia showed the most probable center of spread of the invasion. This article discusses a method of assessing the degree of robustness of the results obtained with Rossmos method. To provide an evaluation of the reliability of geographic profiling results we used the jackknife technique, randomly eliminating part of the data set for a given number of replicates (500) in order to analyze the obtained result for each replicate. In GP the results are a series of images with geoprofiling prioritization, each produced with one of the replicates. These images can be summarized in three different ways: (1) OR, depicting all the high probability pixels from the series of replicates; (2) AND, depicting only those high probability pixels present in every replicate; and (3) MEAN, depicting the mean color value for each pixel calculated from all the replicates. We show that jackknifing can be a useful method to increase robustness of GP analysis in criminology, epidemiology and biological invasions. Summarizing jackknifing results with the OR logical operator yields the highest sensitivity and worst specificity, while the use of the AND operator increases specificity but reduces sensitivity. Using the mean of the pixel values maintains the visualization of the areas of highest priority (specificity), while also showing the surrounding area with varying colors, analogous to confidence limits.

Geo-Profiling: beyond the Current Limits. A Preliminary Study of Mathematical Methods to Improve the Monitoring of Invasive Species

The Geographic Profiling (GP) is a data analysis tool that has great potential. Presently, it is used only minimally, and is almost always used “as it is”, independently on other analysis or data processing methods. GP was initially created as a forensic tool, to find the origin of a series of events (crimes) done by a single actor. However, using this method in integration with others, it is possible to enlarge the opportunities of geographical data analysis. The promising results of this method in integration with others, even if some of them are quite well known methods since many years–and thus well tested–show a number of further possible applications. Here we treat data clustering and partitioning with Kmeans and Dbscan methods; space partitioning (Voronoi tessellation) and a method to assign weights to the events constituting the data set. The software used in this review was written in Python, was released under GPL license and is available on Bitbucket (https://bitbucket.org/ugosnt/al_and_ugo/).

History vs. legend: Retracing invasion and spread of Oxalis pes-caprae L. in Europe and the Mediterranean area

Oxalis pes-caprae L. is a South African geophyte that behaves as an invasive in the eurimediterranean area. According to a long-established hypothesis, O. pes-caprae may have invaded Europe and the Mediterranean area starting from a single plant introduced in the Botanical Garden of Malta at the beginning of the 19th century. The aim of this work was to test this hypothesis, to track the arrival of O. pes-caprae in different countries of the Euro-Mediterranean area and to understand the pathways of spreading and particularly its starting point(s). Historical data attesting the presence of the plant in the whole Euro-Mediterranean region were collected from different sources: herbarium specimens, Floras and other botanical papers, plant lists of gardens, catalogs of plant nurseries and plant dealers. First records of the plant (both cultivated and wild) for each Territorial Unit (3rd level of NUTS) were selected and used to draw up a diachronic map and an animated graphic. Both documents clearly show that oldest records are scattered throughout the whole area, proving that the plant arrived in Europe and in the Mediterranean region more times independently and that its spreading started in different times from several different centers of invasion. Botanical gardens and other public or private gardens, nurseries and plant dealers, and above all seaside towns and harbors seemingly played a strategic role as a source of either intentional and unintentional introduction or spread. A geographic profiling analysis was performed to analyse the data. We used also techniques (Silhouette, Kmeans and Voronoi tessellation) capable of verifying the presence of more than one independent clusters of data on the basis of their geographical distribution. Microsatellites were employed for a preliminary analysis of genetic variation in the Mediterranean. Even if the sampling was insufficient, particularly among the populations of the original area, our data supported three main groups of populations, one of them corresponding to the central group of populations identified by GP analysis, and the other two corresponding, respectively, to the western and the eastern cluster of data. The most probable areas of origin of the invasion in the three clusters of observations are characterized by the presence of localities where the invasive plant was cultivated, with the exception of the Iberian cluster of observation where the observations in the field predate the data about known cultivation localities. Alternative possible reasons are also suggested, to explain the current prevalence of pentaploid short-styled plants in the Euro-Mediterranean area.

Statistical detection of nanoparticles in cells by darkfield microscopy

In the fields of nanomedicine, biophotonics and radiation therapy, nanoparticle (NP) detection in cell models often represents a fundamental step for many in vivo studies. One common question is whether NPs have or have not interacted with cells. In this context, we propose an imaging based technique to detect the presence of NPs in eukaryotic cells. Darkfield images of cell cultures at low magnification (10×) are acquired in different spectral ranges and recombined so as to enhance the contrast due to the presence of NPs. Image analysis is applied to extract cell-based parameters (i.e. mean intensity), which are further analyzed by statistical tests (Students t-test, permutation test) in order to obtain a robust detection method. By means of a statistical sample size analysis, the sensitivity of the whole methodology is quantified in terms of the minimum cell number that is needed to identify the presence of NPs. The method is presented in the case of HeLa cells incubated with gold nanorods labeled with anti-CA125 antibodies, which exploits the overexpression of CA125 in ovarian cancers. Control cases are considered as well, including PEG-coated NPs and HeLa cells without NPs.