Umme Aminun Naher

Biochemical and molecular characterization of potential phosphate-solubilizing bacteria in acid sulfate soils and their beneficial effects on rice growth.

A study was conducted to determine the total microbial population, the occurrence of growth promoting bacteria and their beneficial traits in acid sulfate soils. The mechanisms by which the bacteria enhance rice seedlings grown under high Al and low pH stress were investigated. Soils and rice root samples were randomly collected from four sites in the study area (Kelantan, Malaysia). The topsoil pH and exchangeable Al ranged from 3.3 to 4.7 and 1.24 to 4.25 cmolc kg−1, respectively, which are considered unsuitable for rice production. Total bacterial and actinomycetes population in the acidic soils were found to be higher than fungal populations. A total of 21 phosphate-solubilizing bacteria (PSB) including 19 N2-fixing strains were isolated from the acid sulfate soil. Using 16S rRNA gene sequence analysis, three potential PSB strains based on their beneficial characteristics were identified (Burkholderia thailandensis, Sphingomonas pituitosa and Burkholderia seminalis). The isolated strains were capable of producing indoleacetic acid (IAA) and organic acids that were able to reduce Al availability via a chelation process. These PSB isolates solubilized P (43.65%) existing in the growth media within 72 hours of incubation. Seedling of rice variety, MR 219, grown at pH 4, and with different concentrations of Al (0, 50 and 100 µM) was inoculated with these PSB strains. Results showed that the bacteria increased the pH with a concomitant reduction in Al concentration, which translated into better rice growth. The improved root volume and seedling dry weight of the inoculated plants indicated the potential of these isolates to be used in a bio-fertilizer formulation for rice cultivation on acid sulfate soils.

Application of potential phosphate-solubilizing bacteria and organic acids on phosphate solubilization from phosphate rock in aerobic rice.

A study was conducted at Universiti Putra Malaysia to determine the effect of phosphate-solubilizing bacteria (PSB) and organic acids (oxalic & malic) on phosphate (P) solubilization from phosphate rock (PR) and growth of aerobic rice. Four rates of each organic acid (0, 10, 20, and 30 mM), and PSB strain (Bacillus sp.) were applied to aerobic rice. Total bacterial populations, amount of P solubilization, P uptake, soil pH, and root morphology were determined. The results of the study showed significantly high P solubilization in PSB with organic acid treatments. Among the two organic acids, oxalic acid was found more effective compared to malic acid. Application of oxalic acid at 20 mM along with PSB16 significantly increased soluble soil P (28.39 mg kg−1), plant P uptake (0.78 P pot−1), and plant biomass (33.26 mg). Addition of organic acids with PSB and PR had no influence on soil pH during the planting period. A higher bacterial population was found in rhizosphere (8.78 log10 cfu g−1) compared to the nonrhizosphere and endosphere regions. The application of organic acids along with PSB enhanced soluble P in the soil solution, improved root growth, and increased plant biomass of aerobic rice seedlings without affecting soil pH.

Bio-Fertilizer, Ground Magnesium Limestone and Basalt Applications May Improve Chemical Properties of Malaysian Acid Sulfate Soils and Rice Growth

Acid sulfate soils are normally not suitable for crop production unless they are appropriately ameliorated. An experiment was conducted in a glasshouse to enhance the growth of rice, variety MR219, planted on an acid sulfate soil using various soil amendments. The soil was collected from Semerak, Kelantan, Malaysia. Ground magnesium limestone (GML), bio-fertilizer, and basalt (each 4 t ha−1) were added either alone or in combinations into the soil in pots 15 d before transplanting. Nitrogen, P and potash were applied at 150, 30, and 60 kg ha−1, respectively. Three seven-day-old rice seedlings were transplanted into each pot. The soil had a pH of 3.8 and contained organic C of 21 g kg−1, N of 1.2 g kg−1, available P of 192 mg kg−1, exchangeable K of 0.05 cmolc kg−1, and exchangeable Al of 4.30 cmolc kg−1, with low amounts of exchangeable Ca and Mg (0.60 and 0.70 cmolc kg−1). Bio-fertilizer treatment in combination with GML resulted in the highest pH of 5.4. The presence of high Al or Fe concentrations in the control soil without amendment severely affected the growth of rice. At 60 d of growth, higher plant heights, tiller numbers and leaf chlorophyll contents were obtained when the bio-fertilizer was applied individually or in combination with GML compared to the control. The presence of beneficial bacteria in bio-fertilizer might produce phytohormones and organic acids that could enhance plant growth and subsequently increase nutrient uptake by rice. Hence, it can be concluded that addition of bio-fertilizer and GML improved rice growth by increasing soil pH which consequently eliminated Al and/or Fe toxicity prevalent in the acid sulfate soil.

Eliminating aluminum toxicity in an acid sulfate soil for rice cultivation using plant growth promoting bacteria.

Aluminum toxicity is widely considered as the most important limiting factor for plants growing in acid sulfate soils. A study was conducted in laboratory and in field to ameliorate Al toxicity using plant growth promoting bacteria (PGPB), ground magnesium limestone (GML) and ground basalt. Five-day-old rice seedlings were inoculated by Bacillus sp., Stenotrophomonas maltophila, Burkholderia thailandensis and Burkholderia seminalis and grown for 21 days in Hoagland solution (pH 4.0) at various Al concentrations (0, 50 and 100 μM). Toxicity symptoms in root and leaf were studied using scanning electron microscope. In the field, biofertilizer (PGPB), GML and basalt were applied (4 t·ha−1 each). Results showed that Al severely affected the growth of rice. At high concentrations, the root surface was ruptured, leading to cell collapse; however, no damages were observed in the PGPB inoculated seedlings. After 21 days of inoculation, solution pH increased to >6.0, while the control treatment remained same. Field study showed that the highest rice growth and yield were obtained in the bio-fertilizer and GML treatments. This study showed that Al toxicity was reduced by PGPB via production of organic acids that were able to chelate the Al and the production of polysaccharides that increased solution pH. The release of phytohormones further enhanced rice growth that resulted in yield increase.

Effect of urea-N on growth and indoleacetic acid production of Stenotrophomonas maltophilia (Sb16) isolated from rice growing soils in Malaysia

Growth and activity of N2-fixing bacteria can be affected by N fertilizer application. A study was conducted at Universiti Putra Malaysia, Malaysia, to determine the effect of urea-N on the growth and indoleacetic acid (IAA) production of diazotrophic Stenotrophomonas maltophilia strain Sb16 (accession number, JQ820255), previously isolated from rice (Oryza sativa L.) growing soils of Malaysia. Five rates of N from urea fertilizer were applied (0, 50, 100, 150, and 200 kg ha-1) to the flooded rice soil and incubated in the control environment for 6 wk. Results showed that the population growth increased with increased N rates and highest population (8.2 log10 cfu mL-1) recorded in soil-standing water at the second week of incubation. The population decreased with the reduction of total N. Soil and soil water pH increased from 7.1 to 8.4 at the first week of incubation. Production of indoleacetic acid was significantly reduced with N fertilizer application. The highest indoleacetic acid (2.6 mg mL-1) was produced in the control treatment. Application of high rates of N fertilizer increased the population of diazotrophic strain Sb16 but significantly reduced indoleacetic acid production.

Biomolecular Characterization of Diazotrophs Isolated from the Tropical Soil in Malaysia

This study was conducted to evaluate selected biomolecular characteristics of rice root-associated diazotrophs isolated from the Tanjong Karang rice irrigation project area of Malaysia. Soil and rice plant samples were collected from seven soil series belonging to order Inceptisol (USDA soil taxonomy). A total of 38 diazotrophs were isolated using a nitrogen-free medium. The biochemical properties of the isolated bacteria, such as nitrogenase activity, indoleacetic acid (IAA) production and sugar utilization, were measured. According to a cluster analysis of Jaccard’s similarity coefficients, the genetic similarities among the isolated diazotrophs ranged from 10% to 100%. A dendogram constructed using the unweighted pair-group method with arithmetic mean (UPGMA) showed that the isolated diazotrophs clustered into 12 groups. The genomic DNA rep-PCR data were subjected to a principal component analysis, and the first four principal components (PC) accounted for 52.46% of the total variation among the 38 diazotrophs. The 10 diazotrophs that tested highly positive in the acetylene reduction assay (ARA) were identified as Bacillus spp. (9 diazotrophs) and Burkholderia sp. (Sb16) using the partial 16S rRNA gene sequence analysis. In the analysis of the biochemical characteristics, three principal components were accounted for approximately 85% of the total variation among the identified diazotrophs. The examination of root colonization using scanning electron microscopy (SEM) and transmission electron microscopy (TEM) proved that two of the isolated diazotrophs (Sb16 and Sb26) were able to colonize the surface and interior of rice roots and fixed 22%–24% of the total tissue nitrogen from the atmosphere. In general, the tropical soils (Inceptisols) of the Tanjong Karang rice irrigation project area in Malaysia harbor a diverse group of diazotrophs that exhibit a large variation of biomolecular characteristics.

Effect of Paraquat on growth of diazotrophic strain Stenotrophomonas maltophila in flooded soil

A laboratory study was conducted at Universiti Putra Malaysia to determine the effect of commonly used herbicide Paraquat (full dose, half dose and double of the full dose) on growth of locally isolated diazotroph, Stenotrophomonas maltophila (Sb16), its nitrogen fixation and indoleacetic acid production in flooded soil. Recommended dose of Paraquat showed no significant effect on Sb16 population, nitrogen accumulation and indoleacetic acid (IAA) production. Populations of Sb16 in soil and soil standing water, fluctuated significantly during six weeks of sampling time. The pH of soil standing water positively correlated with the nitrogen content (2.0 %). Double doses of Paraquat significantly reduced indoleacetic acid production both in soil and standing water. Application of Paraquat at recommended dose had no adverse effect on growth and activity of diazotrophic strain Sb16 isolated from tropical soil of Malaysia.

Application of silica to suppress the disease infestation of Phytium ultimum and increase growth of Bermudagrass cv Satiri

An experiment was conducted at glasshouse of Unit Latihan Turf, Taman Pertanian, Universiti Putra Malaysia, to find out the effect of different doses of silica (Si) on growth of Bermuda cv Satiri and to suppress the Pythium ultimum disease infestation. Two sources of silica were used in this study: Turf speed® (T. speed), content 15% of potassium silicate (K ₂SiO ₃) and Tune up®, content 10% Sodium Silicate (SiO 2). Percent disease severity, shoot density, total dry weight, root and shoot dry weight and root-shoot ratio were determined. Application of Turf speed 10 ml L -1 produced the highest shoot density (125/25 cm≤), shoot dry weight (2.49 g) and total dry weight (4.76 g). Tune up (1.0 ml L -1 ) and without application of any Si produced the highest disease severity (73.69%) and (69.75%) respectively, while, Tune up (1.0 ml L -1 ) produced the lowest disease severity (44%). The study proved that application of T. Speed (10 ml L -1 ) and Tune up 2.0 ml L -1 produced good growth, quality and reduced P. ultimum infection of Bermuda cv Satiri.