Urania Christaki

Effect of natural iron fertilization on carbon sequestration in the Southern Ocean

The availability of iron limits primary productivity and the associated uptake of carbon over large areas of the ocean. Iron thus plays an important role in the carbon cycle, and changes in its supply to the surface ocean may have had a significant effect on atmospheric carbon dioxide concentrations over glacial–interglacial cycles. To date, the role of iron in carbon cycling has largely been assessed using short-term iron-addition experiments. It is difficult, however, to reliably assess the magnitude of carbon export to the ocean interior using such methods, and the short observational periods preclude extrapolation of the results to longer timescales. Here we report observations of a phytoplankton bloom induced by natural iron fertilization—an approach that offers the opportunity to overcome some of the limitations of short-term experiments. We found that a large phytoplankton bloom over the Kerguelen plateau in the Southern Ocean was sustained by the supply of iron and major nutrients to surface waters from iron-rich deep water below. The efficiency of fertilization, defined as the ratio of the carbon export to the amount of iron supplied, was at least ten times higher than previous estimates from short-term blooms induced by iron-addition experiments. This result sheds new light on the effect of long-term fertilization by iron and macronutrients on carbon sequestration, suggesting that changes in iron supply from below—as invoked in some palaeoclimatic and future climate change scenarios—may have a more significant effect on atmospheric carbon dioxide concentrations than previously thought.

Longitudinal and vertical trends of bacterial limitation by phosphorus and carbon in the Mediterranean Sea.

The effect of phosphate (P), nitrate (N), and organic carbon (C, glucose) enrichment on heterotrophic bacterial production was examined along two longitudinal transects covering the whole Mediterranean Sea during June and September 1999. During these cruises, integrated bacterial production ranged from 11 to 349 mgC m(-2) d(-1) for the 0-150 m layer. P was found to stimulate bacterial production (BP) in 13 out of 18 experiments, in the eastern and in the western Mediterranean Sea. Organic carbon stimulation of bacterial production was observed at two stations in the Alboran Sea, where the highest bacterial production was recorded (216 and 349 mg C m(-2) d(-1)) and in the Sicily Strait. Maximum rates of alkaline phosphatase (AP) increased from the Alboran to the Levantine Sea whereas AP turnover time decreased. Moreover, alkaline phosphatase activity was not systematically reduced following additions of P. In cases of P limitation, however, the alkaline phosphatase activity to bacterial production ratio was severely reduced in the P and NPC enrichments. Generally, the addition of the limiting factor--whether P or C--had a synchronous stimulating effect on bacterial production and ectoaminopeptidase activity and induced a decline in the amino acid respiration percentage. At two selected stations in the eastern and northwestern Mediterranean, response to enrichment was tested on vertical profiles. Bacteria shifted from P to C limitation at a depth where soluble reactive phosphorus was still undetectable, but corresponding to a strong increase in alkaline phosphatase turnover time. Our results showed that values of AP turnover time lower than 100 h corresponded to situations of P limitation of bacterial production.

Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing.

Water samples were collected along transects from the shore to the centre of two French lakes: the deep, volcanic, oligomesotrophic and low allochthonic-impacted Lake Pavin, and the productive and higher allochthonic-impacted Lake Aydat. The biodiversity was analysed using two approaches: the classical approach consisting of cloning/sequencing of the 18S, ITS1, 5.8S, ITS2 and partial 28S region using primers designed for fungus sequences, and the pyrosequencing of 18S rRNA hypervariable V2, V3 and V5 regions using two primer sets (one universal for eukaryotes and one for fungi). The classical approach yielded 146 (Lake Pavin) and 143 (Lake Aydat) sequences, corresponding to 46 and 63 operational taxonomic units (OTUs) respectively. Fungi represented half of the OTUs identified in Lake Pavin and 30% in Lake Aydat, and were dominated by sequences from Chytridiomycota found throughout Lake Pavin but mostly in the central pelagic zone of Lake Aydat. The pyrosequencing approach yielded 42,064 (Pavin) and 61,371 (Aydat) reads, of which 12-15% and 9-19% reads were assigned to fungi in Lakes Pavin and Aydat respectively. Chytridiomycota members were also dominant among these reads, with OTUs displaying up to > 33-fold overrepresentation in the centre compared with the riparian areas of Lake Aydat. Besides fungi, both approaches revealed other major eukaryote groups, with the highest diversity in the central areas of lakes. One of the major findings of our study was that the two lakes displayed contrasting spatial distributions, homogenous for Lake Pavin and heterogeneous for Lake Aydat, which may be related to their peculiarities. This study represents the first unveiling of microbial eukaryote and fungus diversity assessed with two complementary molecular methods, and is considered a major milestone towards understanding the dynamics and ecology of fungi in freshwater lake ecosystems, which are directly link to the abundance and distribution of taxa.

Carbon flow in the planktonic food web along a gradient of oligotrophy in the Aegean Sea (Mediterranean Sea)

Abstract This work is a study of plankton food web structure and carbon flow in March and September 1997 in the Aegean Sea, area of outflow of Black Sea waters in the Mediterranean Sea. Biomass and production of autotrophs were measured by size fraction as well as bacterial biomass and production; furthermore, we studied heterotrophic nanoflagellates (HNAN), ciliates and mesozooplankton biomass, copepod production and grazing impact on phytoplankton. The obtained low values of nutrients and plankton biomass and production confirmed the oligotrophic character of this region. Despite the fact that there was no significant horizontal variability in the spatial distribution of nutrients throughout the study area, the planktonic biomass and production revealed a gradual decrease from the Northeast Aegean (NEA) towards the South Aegean (SA). In the Northeast Aegean, a large part of the fixed carbon was channelled through the microbial food web towards copepods; in contrast there was a low transfer of energy in the South Aegean where the multivorous food web was developed. Throughout the study area, almost 60–70% of autotrophic biomass and primary production was performed by cells

Microplanktonic Community Structure in a Coastal System Relative to a Phaeocystis Bloom Inferred from Morphological and Tag Pyrosequencing Methods

Background Massive phytoplankton blooms, like the recurrent Phaeocystis proliferation observed every year in the Eastern English Channel (EEC), have a significant influence on the overall planktonic community structure and their food web dynamics. As well as being an important area for local fisheries, the EEC is an ideal ecosystem for work on microbial diversity. This is because, although its environmental context is relatively complex, it is reasonably well understood due to several years of monitoring and morphological observations of its planktonic organisms. The objective of our study was to better understand the under-explored microbial eukaryotic diversity relative to the Phaeocystis bloom. Methodology and Principal Findings The community structure of microplankton (diatoms, haptophytes, ciliates and dinoflagellates) was studied through morphological observations and tag pyrosequencing. During the annual Phaeocystis spring bloom, the phytoplankton biomass increased by 34-fold, while the microzooplankton biomass showed a 4-fold increase, representing on average about 4.6% of the biomass of their phytoplankton prey. Tag pyrosequencing unveiled an extensive diversity of Gymnodiniaceae, with G. spirale and G. fusiformis representing the most abundant reads. An extended diversity of Phaeocystales, with partial 18S rDNA genes sequence identity as low as 85% was found, with taxa corresponding to P. globosa, but also to unknown Phaeocystaceae. Conclusions Morphological analyses and pyrosequencing were generally in accordance with capturing frequency shifts of abundant taxa. Tag pyrosequencing allowed highlighting the maintenance of microplankton diversity during the Phaeocystis bloom and the increase of the taxa presenting low number of reads (minor taxa) along with the dominant ones in response to biotic and/or abiotic changing conditions. Although molecular approaches have enhanced our perception on diversity, it has come to light that the challenge of modelling and predicting ecological change requires the use of different complementary approaches, to link taxonomic data with the functional roles of microbes in biogeochemical cycles.

Dynamic Characteristics of Prochlorococcus and Synechococcus Consumption by Bacterivorous Nanoflagellates

We compared the characteristics of ingestion of Prochlorococcus and Synechococcus by the marine heterotrophic nanoflagellate Pseudobodo sp. and by a mixed nanoflagellate culture (around 3 microm in size) obtained from an open sea oligotrophic area. Maximum ingestion rate on Synechococcus (2.7 Syn flagellate(-1) h(-1)) was reached at concentrations of 5 x 10(5) Syn mL(-1) and decreased between 6 x 10(5) and 1.5 x 10(6) Syn mL(-1). In order to validate laboratory data, one set of data on Synechococcus grazing was obtained during a field study in the oligotrophic northeastern Mediterranean Sea. Ingestion rates by heterotrophic nanoflagellates were related to Synechococcus abundance in the water, and the feeding rate showed a clear diel rhythm with consumption being highest during the night, declining during the day hours, and being lowest at dusk. Ingestion rates on Prochlorococcus increased linearly for the whole range of prey density used (i.e., from 1 x 10(3) to 3 x 10(6) Proc mL(-1)), with maximum ingestion of 6.7 Proc flagellate(-1) h(-1). However, for prey concentrations in the range of 10(3)-10(5), which are usually encountered in aquatic systems, ingestion rates were significantly less than on Synechococcus. In our experiments, both Prochlorococcus and Synechococcus proved to be poor food items for support of nanoflagellate growth.

Shifts in bacterial community composition associated with increased carbon cycling in a mosaic of phytoplankton blooms

Marine microbes have a pivotal role in the marine biogeochemical cycle of carbon, because they regulate the turnover of dissolved organic matter (DOM), one of the largest carbon reservoirs on Earth. Microbial communities and DOM are both highly diverse components of the ocean system, yet the role of microbial diversity for carbon processing remains thus far poorly understood. We report here results from an exploration of a mosaic of phytoplankton blooms induced by large-scale natural iron fertilization in the Southern Ocean. We show that in this unique ecosystem where concentrations of DOM are lowest in the global ocean, a patchwork of blooms is associated with diverse and distinct bacterial communities. By using on-board continuous cultures, we identify preferences in the degradation of DOM of different reactivity for taxa associated with contrasting blooms. We used the spatial and temporal variability provided by this natural laboratory to demonstrate that the magnitude of bacterial production is linked to the extent of compositional changes. Our results suggest that partitioning of the DOM resource could be a mechanism that structures bacterial communities with a positive feedback on carbon cycling. Our study, focused on bacterial carbon processing, highlights the potential role of diversity as a driving force for the cycling of biogeochemical elements.

Microbial community production, respiration, and structure of the microbial food web of an ecosystem in the northeastern Atlantic Ocean

increased from winter (101 ± 24 mmol O2 m 2 d 1 ) to spring (153 ± 27 mmol O2 m 2 d 1 ) and then decreased from spring to late summer (44 ± 18 mmol O2 m 2 d 1 ). DCR rates increased from winter (47 ± 18 mmol O2 m 2 d 1 ) to spring (97 ± 7 mmol O2 m 2 d 1 ) and then decreased from spring to late summer (50 ± 7 mmol O2 m 2 d 1 ). The onset of stratification depended on latitude as well as on the presence of mesoscale structures (eddies), and this largely contributed to the variability of GCP. The trophic status of the POMME area was defined as net autotrophic, with a mean annual net community production rate of +38 ± 18 mmol O2 m 2 d 1 , exhibiting a seasonal variation from +2 ± 20 mmol O2 m 2 d 1 to +57 ± 20 mmol O2 m 2 d 1 . This study highlights that small organisms (picoautotrophs, nanoautotrophs, and bacteria) are the main organisms contributing to biological fluxes throughout the year and that episodic blooms of microphytoplankton are related to mesoscale structures.

Diel variations of the DMSP-to-chlorophyll a ratio in Northwestern Mediterranean surface waters

Abstract In the framework of the projects DYFAMED and PICASSO, diel variations of particulate dimethylsulfoniopropionate (DMSPp) and of its size fraction higher than 10 μm (DMSPp>10 μm) were studied in surface waters of the central Ligurian Sea in May 1990 and May 1995, and in the harbour of the city of Barcelona (Spain) in July 1998. Time series performed in stratified and nitrate depleted surface waters of the Ligurian Sea revealed that DMSPp>10 μm was undergoing diurnal variations. DMSPp-containing particles in the size range higher than 10 μm also markedly affected the DMSPp-to-chlorophyll (chl) a ratio of surface waters on a daily basis. The ratios were 35% to 72% lower at dawn than at dusk. The fact that the diadinoxanthin (DD)-to-chl a ratio of surface phytoplanktonic populations did not exhibit diurnal cycles suggests that physiological adaptation of cellular DMSP and chl a to the light conditions was not a likely process to account for the diurnal changes of the DMSPp-to-chl a ratio. It is suggested that such diurnal variability resulted from changes in plankton composition due to vertical migrations of DMSP-containing organisms larger than 10 μm. We have demonstrated from samples collected in the harbour of the city of Barcelona that DMSP-containing dinoflagellates are active diel migrants. However, the results obtained in the open sea in May 1990 suggest that dinoflagellates and also ciliates contribute to the pool of DMSPp in the size range larger than 10 μm. The results of May 1995 are ambiguous as to the role of dinoflagellates because, in the absence of specific cell counts, DMSPp>10 μm and the pigment peridinin, which is usually present in dinoflagellates (but peridinin-free dinoflagellates exist) showed very different vertical and temporal patterns.

Potential role of fungi in plankton food web functioning and stability: a simulation analysis based on Lake Biwa inverse model

Recent investigations of molecular diversity in the plankton of lakes and coastal lagoons have detected an unexpected diversity of fungi including chytrids. Microscopic observations have provided evidence for the presence of two main forms. The sporangia are implied in algal parasitism. The propagules, i.e. uniflagellated zoospores, may constitute an alternate resource for consumers. These results suggest a need to reconsider the concept of plankton food web functioning. In order to describe the potential role of fungi in food web functioning, we revisit the model of carbon flows in the photic zone of the North basin of Lake Biwa in summer, established using the inverse analysis method for estimating missing flow values. In the absence of quantification of the flows induced by fungal activity, simulations are realised of their potential role in the plankton food web. Different rates of parasitism of micro-phytoplankton are tested, with a return of this carbon to the consumer via the consumption of zoospores by mesozooplankton and, at a lower rate, microzooplankton. The presence of this indirect pathway channelling micro-phytoplankton production to the consumers via the fungi, leads to the following trends: (i) an enhancement of the trophic efficiency index, (ii) a decrease of the ratio detritivory/herbivory, (iii) a decrease of the percentage of carbon flowing in cyclic pathways, and (iv) an increase in the relative ascendency of the system. Relative ascendency, which indicates pathways more specialised and less redundant, is related to theories linking food web patterns and stability. A high ascendency in the plankton food web (low trophic level), if connected to a food web of high redundancy at higher trophic levels (e.g. nekton food web) would fit well to the stabilising pattern called structural asymmetry, considered a stability criterion. More precise models, taking into account the species diversity of fungi and the high specificity of their parasitism on the micro-phytoplankton, would further accentuate this observation.