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Featured researches published by Uzay Kirbiyik.


The Journal of Physiology | 2002

Endogenous cyclo-oxygenase activity regulates mouse gastric surface pH

Heidi K. Baumgartner; Uzay Kirbiyik; Tamer Coskun; Shaoyou Chu; Marshall H. Montrose

In the stomach, production of prostaglandins by cyclo‐oxygenase (COX) is believed to be important in mucosal defence. We tested the hypothesis that endogenous COX activity is required for protective gastric surface pH control. Intact stomachs of anaesthetized mice were perfused with a weakly buffered solution (150 mmNaCl+ 4 mm Homopipes) at pH values from 2.5 to 7.0. Gastric effluents were collected to measure pH and estimate amounts of acid or alkali secretion in nanomoles secreted per minute. A switch from net acid to net alkali secretion was seen in response to acidifying luminal pH with an apparent ‘set point’ between pH 4 and 5. At luminal pH 3, the net alkali secretion (12.7 ± 2.8 nmol OH− equivalents min−1) was abolished (2.2 ± 1.7 nmol OH− min−1) by the non‐specific COX inhibitor indomethacin (5 mg kg−1 I.P.). Similar inhibition was observed using a COX‐1 inhibitor (SC‐560; 10 mg kg−1 I.P.), but not a COX‐2 inhibitor (NS‐398; 10 mg kg−1 I.P.). Subsequent treatment with 16,16‐dimethyl prostaglandin E2 (dm‐PGE2; 1 mg kg−1 I.P.) rescued the alkali secretion (21.8 ± 2.7 nmol OH− min−1). In either the absence or presence of the H+,K+‐ATPase inhibitor omeprazole (60 mg kg−1 I.P.), indomethacin blocked similar amounts of net alkali secretion (10.5 ± 2.7 and 16.4 ± 3.4 nmol OH− min−1, respectively). We also used in vivo confocal microscopy to examine pH near the mucosal surface. The gastric mucosal surface of anaesthetized mice was exposed and mucosal surface pH was imaged using the fluorescence intensity ratio of Cl‐NERF as a pH indicator. Results showed a switch from a continuous net acid to net alkali secretion by the stomach in response to changing superfusate pH from 5 to 3. At luminal pH 3, the relatively alkaline surface pH (4.3 ± 0.1) was acidified (3.6 ± 0.2) by indomethacin, and subsequent dm‐PGE2 restored surface pH (4.2 ± 0.2). We conclude that the pre‐epithelial alkaline layer is regulated by endogenous COX activity.


Online Journal of Public Health Informatics | 2013

Evaluating the Variation on Public Health's Perceived Field Need of Communicable Disease Reports

Uzay Kirbiyik; Roland Gamache; Brian E. Dixon; Shaun J. Grannis


PMC | 2017

Completeness and timeliness of notifiable disease reporting: a comparison of laboratory and provider reports submitted to a large county health department

Brian E. Dixon; Zuoyi Zhang; Patrick T. S. Lai; Uzay Kirbiyik; Jennifer Williams; Rebecca A. Hills; Debra Revere; P. Joseph Gibson; Shaun J. Grannis


Online Journal of Public Health Informatics | 2015

Return to Public Health- Undeliverable letters of Communicable Disease Patients

Uzay Kirbiyik; Hassan Shah; Patrick T. S. Lai; Jennifer Williams; Brian E. Dixon; Shaun J. Grannis


Archive | 2015

Investigating the Reasons of Undeliverable Mail Sent to Communicable Disease Patients

Hassan Shah; Uzay Kirbiyik; Brian E. Dixon


AMIA | 2015

Evaluating the Accuracy of Automated Notifiable Condition Detection in Free-Text Electronic Laboratory Report Results Using Contemporary Text Mining and Machine Learning Methods.

Uzay Kirbiyik; Patrick T. S. Lai; Brian E. Dixon; Shaun J. Grannis; Suranga Nath Kasthurirathne


AMIA | 2015

Completeness and Timeliness of Notifiable Disease Surveillance Data Submitted by Providers to Public Health Authorities.

Brian E. Dixon; Patrick T. S. Lai; Uzay Kirbiyik; Zuoyi Zhang; Debra Revere; Rebecca A. Hills; P. Joseph Gibson; Jennifer Williams; Shaun J. Grannis


Archive | 2014

Automating Provider Reporting of Communicable Disease Cases using Health Information Technology

Brian E. Dixon; Patrick T. S. Lai; Uzay Kirbiyik; Shaun J. Grannis

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Brian E. Dixon

Indiana University Bloomington

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Debra Revere

University of Washington

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