V. S. Artamonova

Non‐canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1

Translation initiation region (TIR) of the rpsA mRNA encoding ribosomal protein S1 is one of the most efficient in Escherichia coli despite the absence of a canonical Shine–Dalgarno‐element. Its high efficiency is under strong negative autogenous control, a puzzling phenomenon as S1 has no strict sequence specificity. To define sequence and structural elements responsible for translational efficiency and autoregulation of the rpsA mRNA, a series of rpsA′–′lacZ chromosomal fusions bearing various mutations in the rpsA TIR was created and tested for β‐galactosidase activity in the absence and presence of excess S1. These in vivo results, as well as data obtained by in vitro techniques and phylogenetic comparison, allow us to propose a model for the structural and functional organization of the rpsA TIR specific for proteobacteria related to E.coli. According to the model, the high efficiency of translation initiation is provided by a specific fold of the rpsA leader forming a non‐contiguous ribosome entry site, which is destroyed upon binding of free S1 when it acts as an autogenous repressor.

The Last RNA-Binding Repeat of the Escherichia coli Ribosomal Protein S1 Is Specifically Involved in Autogenous Control

The ssyF29 mutation, originally selected as an extragenic suppressor of a protein export defect, has been mapped within the rpsA gene encoding ribosomal protein S1. Here, we examine the nature of this mutation and its effect on translation. Sequencing of the rpsA gene from the ssyF mutant has revealed that, due to an IS10R insertion, its product lacks the last 92 residues of the wild-type S1 protein corresponding to one of the four homologous repeats of the RNA-binding domain. To investigate how this truncation affects translation, we have created two series of Escherichia coli strains (rpsA(+) and ssyF) bearing various translation initiation regions (TIRs) fused to the chromosomal lacZ gene. Using a beta-galactosidase assay, we show that none of these TIRs differ in activity between ssyF and rpsA(+) cells, except for the rpsA TIR: the latter is stimulated threefold in ssyF cells, provided it retains at least ca. 90 nucleotides upstream of the start codon. Similarly, the activity of this TIR can be severely repressed in trans by excess S1, again provided it retains the same minimal upstream sequence. Thus, the ssyF stimulation requires the presence of the rpsA translational autogenous operator. As an interpretation, we propose that the ssyF mutation relieves the residual repression caused by normal supply of S1 (i.e., that it impairs autogenous control). Thus, the C-terminal repeat of the S1 RNA-binding domain appears to be required for autoregulation, but not for overall mRNA recognition.

Nucleotide sequences of the mitochondrial cytochrome oxidase subunit I (COI) gene of lamprey classified with Lethenteron camtschaticum and the Lethenteron reissneri complex show no species-level differences

Life history strategy has traditionally played an important role in the taxonomy of lampreys. In some cases, this was the basis for distinguishing socalled satellite species groups (1). Lamprey larvae within a satellite species group are morphologically identical; however, adult lampreys differ from one another in a number of species (primarily, the body length). It is believed that lampreys of some species migrate to large bodies of water (rivers, lakes, seas, and oceans) after metamorphosis, become parasites of bony fishes and begin to reproduce within 0.5-3 years, whereas lam� preys of other species remain in their native river, become mature within 6-10 months, and then die (1- 4). As a rule, a satellite species group comprises one parasitic anadromous species and several satellite resident species (nonparasitic or parasitic), which are assumed to have sympatrically originated from the first species (1, 4).

Natural Hybridization of Two Mussel Species Dreissena polymorpha (Pallas, 1771) and Dreissena bugensis (Andrusov, 1897)

AbstractsDreissenids display a high diversity of shell morphology, and it is frequently difficult to ascribe some individuals from mixed populations to one of the two species, Dreissena polymorpha (Pallas, 1771) or D. bugensis (Andrusov, 1897). Presumably, such individuals may be interspecific hybrids. We have analyzed species-specific allozyme loci of the typical representatives of these two mussel species and putative interspecific hybrids. A natural interspecific hybrid between D. polymorpha and D. bugensis was discovered for the first time by genetic methods. It has been demonstrated that D. bugensis was a maternal parent.

Freshwater Pearl mussels of the genus Margaritifera (Mollusca: Bivalvia) described as M. elongata (Lamarck, 1819) and M. borealis (Westerlund, 1871) should be classified with M. margaritifera (Linnaeus, 1758)

The shells of Pearl mussels from the basins of the Solza, Keret’, and Umba rivers flowing into the White Sea have been measured to determine the ratio of shell convexity to its maximum height. This ratio is the main character that, according to Bogatov et al. (2003), allows one to distinguish between three species of the genus Margaritifera: M. margaritifera, M. elongata, and M. borealis. It has been found that the above ratio gradually increases as the shell grows. Therefore, this character is unsuitable for species diagnosis, the more so that no hiatus in it between the three forms of pearl mussels has been revealed in any of the samples studied. On this basis, it may be concluded that Northern Europe, including Russia, is inhabited by only one species of pearl mussels, M. margaritifera.

Ecology and conservation of the endangered Indochinese freshwater pearl mussel, Margaritifera laosensis (Lea, 1863) in the Nam Pe and Nam Long rivers, Northern Laos

In this paper we present the first ecological data of Indochinese freshwater pearl mussel, Margaritifera laosensis populations. We also provide a comparative study of the ecology of this tropical species with populations of other Margaritiferidae. We conducted surveys in ten tributaries of the River Nam Ou (Middle Mekong Drainage, Northern Laos). Reproductively viable populations were found only in the Nam Long and Nam Pe rivers, which are two of the only three known viable populations of this species in the world. The habitats of M. laosensis include mountainous oligotrophic rivers with circumneutral pH. Optimal mesohabitats are riffles and runs with a median depth of 0.2 m and median current velocity of 0.3 ms−1. Pearl mussels were more common in gravel and fine gravel riverbed substrates. Surveys revealed 252 specimens, but only 78 (31.0%) were alive. The largest mussels observed were 110 mm in length and only 11–12 years of age. The presence of smaller-sized mussels indicates recent recruitment in both populations. The most significant threats to M. laosensis populations are harvest by local people and land development in the River Nam Ou Basin.

Genetic Markers in Population Studies of Atlantic Salmon Salmo salar L.: Analysis of DNA Sequences

The review, which consist of two parts, summarizes literature data on all genetic markers used in population studies of Atlantic salmon. The second part of the review concerns analysis of DNA sequences; fragments of known genes, anonymous genome sequences, mini-and microsatellites, mitochondrial DNA. The main results of studies of the Atlantic salmon gene poll using DNA markers are discussed. Most of the markers examined in certain conditions may be under selection. The resolution power of various methods of DNA analysis and the fields of their use are considered in reference to Atlantic salmon.

Hybridization of beaked redfish (Sebastes mentella) with small redfish (Sebastes viviparus) and diversification of redfish (Actinopterygii: Scorpaeniformes) in the Irminger Sea

We searched for Sebastes mentella and Sebastes viviparus hybrids in samples of redfish with external traits typical of S. mentella. The samples were collected in the Irminger Sea in 2007 (n = 131) and 2010 (n = 72). Hybrids were identified using MDH-2* locus coding malate dehydrogenase. Both samples contained hybrids (two and one individuals, respectively). The results of our investigations and previously published data show that interspecific hybridization may have a strong impact on the genetic structure of S. mentella in the Irminger Sea, presumably being one of the main reasons for the differentiation of allele frequencies of some genes between samples collected at different depths. This should be taken into consideration in studies of Irminger Sea redfish.

Unintentional genetic processes in artificially maintained populations: Proving the leading role of selection in evolution

The review considers studies examining artificially maintained populations as models for understanding biological evolution. The key factors of gene pool evolution—random processes, interspecific hybridization, migration, mutation, and selection—are analyzed. We present evidence indicating that selection is the leading evolutionary factor that regulates the operation of other factors, directly or through genetic systems.

Triploidy does not decrease contents of eicosapentaenoic and docosahexaenoic acids in filets of pink salmon Oncorhynchus gorbuscha

Triploid fish has become an important item of commercial aquaculture, but data on its fatty acid (FA) composition are still controversial, especially regarding essential polyunsaturated fatty acids, eicosapentaenoic acid (20:5n-3, EPA) and docosahexaenoic acid (22:6n-3, DHA). We studied FA composition and content of diploid and triploid pink salmon Oncorhynchus gorbuscha, reared in aquaculture in a bay of the White Sea (Russia). FA composition, measured as percentages of total FA of triploids and immature diploid females significantly differed from that of mature diploid fish. Specifically, mature diploids had higher percentage of EPA and DHA in their muscle tissue (filets) compared to that of triploids and immature diploid females. Nevertheless, the contents of EPA and DHA per mass of the filets in diploid and triploid specimens were similar. Thus, no special efforts are needed to improve EPA and DHA contents in filets of triploids.