Valerie Allain

Seamounts are hotspots of pelagic biodiversity in the open ocean.

The identification of biodiversity hotspots and their management for conservation have been hypothesized as effective ways to protect many species. There has been a significant effort to identify and map these areas at a global scale, but the coarse resolution of most datasets masks the small-scale patterns associated with coastal habitats or seamounts. Here we used tuna longline observer data to investigate the role of seamounts in aggregating large pelagic biodiversity and to identify which pelagic species are associated with seamounts. Our analysis indicates that seamounts are hotspots of pelagic biodiversity. Higher species richness was detected in association with seamounts than with coastal or oceanic areas. Seamounts were found to have higher species diversity within 30–40 km of the summit, whereas for sets close to coastal habitat the diversity was lower and fairly constant with distance. Higher probability of capture and higher number of fish caught were detected for some shark, billfish, tuna, and other by-catch species. The study supports hypotheses that seamounts may be areas of special interest for management for marine pelagic predators.

An ocean observation system for monitoring the affects of climate change on the ecology and sustainability of pelagic fisheries in the Pacific Ocean

Climate change presents an emerging challenge to the sustainable management of tuna fisheries, and robust information is essential to ensure future sustainability. Climate and harvest affect tuna stocks, populations of non-target, dependent species and the ecosystem. To provide relevant advice we need an improved understanding of oceanic ecosystems and better data to parameterise the models that forecast the impacts of climate change. Currently ocean-wide data collection in the Pacific Ocean is primarily restricted to oceanographic data. However, the fisheries observer programs that operate in the region offer an opportunity to collect the additional information on the mid and upper trophic levels of the ecosystem that is necessary to complement this physical data, including time-series of distribution, abundance, size, composition and biological information on target and non-target species and mid trophic level organisms. These observer programs are in their infancy, with limited temporal and spatial distribution but recent international and national policy decisions have been made to expand their coverage. We identify a number of actions to initiate this monitoring including: consolidating collaborations to ensure the use of best quality data; developing consistency between sub-regional observer programmes to ensure that they meet the objectives of ecosystem monitoring; interrogating of existing time series to determine the most appropriate spatial template for monitoring; and exploring existing ecosystem models to identify suitable indicators of ecosystem status and change. The information obtained should improve capacity to develop fisheries management policies that are resilient and can be adapted to climate change.

Tuna Longline Fishing around West and Central Pacific Seamounts

Background Seamounts have been identified as aggregating locations for pelagic biodiversity including tuna; however the topography and prevailing oceanography differ between seamounts and not all are important for tuna. Although a relatively common feature in oceanic ecosystems, little information is available that identifies those that are biologically important. Improved knowledge offers opportunities for unique management of these areas, which may advance the sustainable management of oceanic resources. In this study, we evaluate the existence of an association between seamounts and tuna longline fisheries at the ocean basin scale, identify significant seamounts for tuna in the western and central Pacific Ocean, and quantify the seamount contribution to the tuna longline catch. Methodology/Principal Findings We use data collected for the Western and Central Pacific Ocean for bigeye, yellowfin, and albacore tuna at the ocean basin scale. GLMs were applied to a coupled dataset of longline fisheries catch and effort, and seamount location information. The analyses show that seamounts may be associated with an annual longline combined catch of 35 thousand tonnes, with higher catch apparent for yellowfin, bigeye, and albacore tuna on 17%, 14%, and 14% of seamounts respectively. In contrast 14%, 18%, and 20% of seamounts had significantly lower catches for yellowfin, bigeye and albacore tuna respectively. Studying catch data in relation to seamount positions presents several challenges such as bias in location of seamounts, or lack of spatial resolution of fisheries data. Whilst we recognize these limitations the criteria used for detecting significant seamounts were conservative and the error in identification is likely to be low albeit unknown. Conclusions/Significance Seamounts throughout the study area were found to either enhance or reduce tuna catch. This indicates that management of seamounts is important Pacific-wide, but management approaches must take account of local conditions. Management of tuna and biodiversity resources in the region would benefit from considering such effects.

Setting the stage for a global-scale trophic analysis of marine top predators: a multi-workshop review

Global-scale studies of marine food webs are rare, despite their necessity for examining and understanding ecosystem level effects of climate variability. Here we review the progress of an international collaboration that compiled regional diet datasets of multiple top predator fishes from the Indian, Pacific and Atlantic Oceans and developed new statistical methods that can be used to obtain a comprehensive ocean-scale understanding of food webs and climate impacts on marine top predators. We loosely define top predators not as species at the apex of the food web, but rather a guild of large predators near the top of the food web. Specifically, we present a framework for world-wide compilation and analysis of global stomach-contents and stable-isotope data of tunas and other large pelagic predatory fishes. To illustrate the utility of the statistical methods, we show an example using yellowfin tuna in a “test” area in the Pacific Ocean. Stomach-contents data were analyzed using a modified (bagged) classification tree approach, which is being prepared as an R statistical software package. Bulk δ15N values of yellowfin tuna muscle tissue were examined using a Generalized Additive Model, after adjusting for spatial differences in the δ15N values of the baseline primary producers predicted by a global coupled ocean circulation-biogeochemical-isotope model. Both techniques in tandem demonstrated the capacity of this approach to elucidate spatial patterns of variations in both forage species and predator trophic positions and have the potential to predict responses to climate change. We believe this methodology could be extended to all marine top predators. Our results emphasize the necessity for quantitative investigations of global-scale datasets when evaluating changes to the food webs underpinning top ocean predators under long-term climatic variability.

Interaction between coastal and oceanic ecosystems of the Western and Central Pacific Ocean through predator-prey relationship studies.

The Western and Central Pacific Ocean sustains the highest tuna production in the world. This province is also characterized by many islands and a complex bathymetry that induces specific current circulation patterns with the potential to create a high degree of interaction between coastal and oceanic ecosystems. Based on a large dataset of oceanic predator stomach contents, our study used generalized linear models to explore the coastal-oceanic system interaction by analyzing predator-prey relationship. We show that reef organisms are a frequent prey of oceanic predators. Predator species such as albacore (Thunnus alalunga) and yellowfin tuna (Thunnus albacares) frequently consume reef prey with higher probability of consumption closer to land and in the western part of the Pacific Ocean. For surface-caught-predators consuming reef prey, this prey type represents about one third of the diet of predators smaller than 50 cm. The proportion decreases with increasing fish size. For predators caught at depth and consuming reef prey, the proportion varies with predator species but generally represents less than 10%. The annual consumption of reef prey by the yellowfin tuna population was estimated at 0.8±0.40CV million tonnes or 2.17×1012±0.40CV individuals. This represents 6.1%±0.17CV in weight of their diet. Our analyses identify some of the patterns of coastal-oceanic ecosystem interactions at a large scale and provides an estimate of annual consumption of reef prey by oceanic predators.

The Coral Sea: Physical Environment, Ecosystem Status and Biodiversity Assets

The Coral Sea, located at the southwestern rim of the Pacific Ocean, is the only tropical marginal sea where human impacts remain relatively minor. Patterns and processes identified within the region have global relevance as a baseline for understanding impacts in more disturbed tropical locations. Despite 70 years of documented research, the Coral Sea has been relatively neglected, with a slower rate of increase in publications over the past 20 years than total marine research globally. We review current knowledge of the Coral Sea to provide an overview of regional geology, oceanography, ecology and fisheries. Interactions between physical features and biological assemblages influence ecological processes and the direction and strength of connectivity among Coral Sea ecosystems. To inform management effectively, we will need to fill some major knowledge gaps, including geographic gaps in sampling and a lack of integration of research themes, which hinder the understanding of most ecosystem processes.

International workshop on opportunities for ecosystem approaches to fisheries management in the Pacific Ocean tuna fisheries

Modern fisheries management encompasses ecosystem-wide perspectives, and sustainability is measured both in terms of the target stocks but also in terms of the direct and indirect impact that fishing practices may have upon populations of non-target, associated and dependent species and ecosystem structure and function (Garcia and Cochrane 2005). Implementing an Ecosystem Approach to Fisheries Management (EAFM) requires performance measures against criteria that can be used to assess overall ecosystem status, the impacts of human activities, and environmental variation. In single-species management these decision criteria are quantitative measures primarily based on stock assessment model outcomes which can guide management. Analogous decision criteria for non-target and ecosystem-level attributes are in a nascent stage of development (Samhouri et al. 2010). There is increasing effort by a range of organizations to collect detailed data on the structure and dynamics of the Pacific Ocean pelagic ecosystem. This has primarily occurred through observer programmes (e.g. bycatch composition and quantities), trophic ecology (e.g. stomach contents, stable isotopes), and mid-trophic level sampling (e.g. acoustics and net sampling of micronekton and zooplankton). Tuna fisheries from the tropical Pacific Ocean (Fig. 1) provide more than 50% of the global catch, and applying EAFM is explicit in the conventions of the Regional Fisheries Management Organisations (RFMOs) responsible for their management. The Global Environment Facility Oceanic Fisheries Management project recently brought together scientists who have been leading ecosystem research in the Pacific Ocean pelagic systems, by convening a workshop to synthesize past progress and identify future priorities within the scientific and monitoring component of EAFM. The workshop was hosted by the Secretariat of the Pacific Community at its headquarters in Noumea, New Caledonia in March 2011.

Climate and oceanic fisheries: recent observations and projections and future needs

Several lines of evidence show that climatic variation and global warming can have a major effect on fisheries production and replenishment. To prevent overfishing and rebuild overfished stocks under changing and uncertain environmental conditions, new research partnerships between fisheries scientists and climate change experts are required. The International Workshop on Climate and Oceanic Fisheries held in Rarotonga, Cook Islands, 3–5 October 2011, brought representatives from these disciplines together to consider the effects of climate variability and change on oceanic fisheries, the tools and strategies required for identifying potential impacts on oceanic fisheries, and the priority adaptations for sustaining future harvests, especially in the Pacific Ocean. Recommendations made by the workshop included (1) development and implementation of sustainable management measures for fisheries; (2) long-term commitment to monitoring necessary to assess stock status and to conduct integrated ecosystem assessments; (3) process oriented research to evaluate the potential of marine species for adaptation to a changing ocean environment; (4) provision of improved national meteorological and hydrological services to fisheries agencies, enterprises and communities; (5) continuing communication of potential impacts and adaptation strategies to stakeholders to reduce the threats to oceanic fisheries and capitalise on opportunities; and (6) continued collaborative efforts between meteorological, oceanographic, biological and fisheries researchers and management agencies to better monitor and understand the impacts of short-term variability and longer-term change on oceanic fisheries.

Bioenergetics, Trophic Ecology, and Niche Separation of Tunas

Tunas are highly specialized predators that have evolved numerous adaptations for a lifestyle that requires large amounts of energy consumption. Here we review our understanding of the bioenergetics and feeding dynamics of tunas on a global scale, with an emphasis on yellowfin, bigeye, skipjack, albacore, and Atlantic bluefin tunas. Food consumption balances bioenergetics expenditures for respiration, growth (including gonad production), specific dynamic action, egestion, and excretion. Tunas feed across the micronekton and some large zooplankton. Some tunas appear to time their life history to take advantage of ephemeral aggregations of crustacean, fish, and molluscan prey. Ontogenetic and spatial diet differences are substantial, and significant interdecadal changes in prey composition have been observed. Diet shifts from larger to smaller prey taxa highlight ecosystem-wide changes in prey availability and diversity and provide implications for changing bioenergetics requirements into the future. Where tunas overlap, we show evidence of niche separation between them; resources are divided largely by differences in diet percentages and size ranges of prey taxa. The lack of long-term data limits the ability to predict impacts of climate change on tuna feeding behaviour. We note the need for systematic collection of feeding data as part of routine monitoring of these species, and we highlight the advantages of using biochemical techniques for broad-scale analyses of trophic relations. We support the continued development of ecosystem models, which all too often lack the regional-specific trophic data needed to adequately investigate climate and fishing impacts.

Spatial and temporal variability of zooplankton off New Caledonia (Southwestern Pacific) from acoustics and net measurements

Spatial and temporal distribution of zooplankton off New Caledonia in the eastern Coral Sea was studied during two multidisciplinary cruises in 2011, during the cool and the hot seasons. Acoustic measurements of zooplankton were made using a shipborne acoustic Doppler current profiler (S-ADCP), a scientific echosounder and a Tracor acoustic profiling system (TAPS). Relative backscatter from ADCP was converted to biomass estimates using zooplankton weights from net-samples collected during the cruises. Zooplankton biomass was estimated using four methods: weighing, digital imaging (ZooScan), ADCP and TAPS. Significant correlations were found between the different biomass estimators and between the back-scatters of the ADCP and the echosounder. There was a consistent diel pattern in ADCP derived biomass and echosounder backscatter resulting from the diel vertical migration (DVM) of zooplankton. Higher DVM amplitudes were associated with higher abundance of small zooplankton and cold waters to the south of the study area, while lower DVM amplitudes in the north were associated with warmer waters and higher abundance of large organisms. Zooplankton was largely dominated by copepods (71–73%) among which calanoids prevailed (40–42%), with Paracalanus spp. as the dominant species (16–17%). Overall, zooplank-ton exhibited low abundance and biomass (mean night dry biomass of 4.7 6 2.2 mg m 3 during the cool season and 2.4 6 0.4 mg m 3 during the hot season) but high richness and diversity (Shannon index ∼4). Substantially enhanced biomass and abundance appeared to be episodically associated with mesoscale features contributing to shape a rather patchy zooplankton distribution.