Vladislav Tomišić

Bis(Amino Acid) Oxalyl Amides as Ambidextrous Gelators of Water and Organic Solvents. Supramolecular Gels With Temperature Dependent Assembly-Dissolution Equilibrium

Bis(LeuOH) (1a), bis-(ValOH) (2a) and bis(PhgOH) (5a) (Phg denotes (R)-phenylglycine) oxalyl amides are efficient low molecular weight organic gelators of various organic solvents and their mixtures as well as water, water/DMSO, and water/DMF mixtures. The organisational motifs in aqueous gels are dominated primarily by lipophilic interactions while those in organic solvents are formed by intermolecular hydrogen bonding. Most of the gels are thermoreversible and stable for many months. However, 2a forms unstable gels with organic solvents which upon ageing transform into variety of crystalline shapes. For some 1a/alcohol gels, a linear correlation between alcohol dielectric constants (epsilon) and gel melting temperatures (Tg) was found. The 1H NMR and FTIR spectroscopic investigations of selected gels reveal the existence of temperature dependent network assembly/dissolution equilibrium. In the 1H NMR spectra of gels only the molecules dissolved in entrapped solvent could be observed. By using an internal standard, the concentration of dissolved gelator molecules could be determined. In FTIR spectra, the bands corresponding to network assembled and dissolved gelator molecules are simultaneously present. This enabled determination of the Kgel values by using both methods. From the plots of InKgel versus 1/T, the deltaHgel values of selected gels have been determined (-deltaHgel in 10-36 kJ mol(-1) range) and found to be strongly solvent dependent. The deltaHgel values determined by 1H NMR and FTIR spectroscopy are in excellent agreement. Crystal structures of 2a and rac-5a show the presence of organisational motifs and intermolecular interactions in agreement with those in gel fibres elucidated by spectroscopic methods.

Binding of nucleotides in water by phenanthridinium bis(intercaland) receptor molecules

The bis(phenanthridinium) receptor molecules 3–5 bind nucleotides in aqueous media by stacking interactions between cis-oriented receptor units and the intercalated nucleic base part of a nucleotide with stability constants in the range 105–106 dm3 mol–1, the highest measured to date for these type of receptors and substrates.

Tautomeric and protonation equilibria of Schiff bases of salicylaldehyde with aminopyridines

Abstract The equilibria of the Schiff bases of salicylaldehyde with 2-aminopyridine, 2,3-diaminopyridine, 2,6-diaminopyridine and 3-aminomethylpyridine were studied by means of spectroscopic methods. In non-polar solvents enolimines were predominantly present. In polar solvents rapid tautomeric interconversion of enolimines to ketoamines as well as slow hydrolysis were noted. The tendency to tautomeric interconversion was significant in the case of 2-(3-pyridylmethylimi-nomethyl)phenol, whereas in the case of other Schiff bases it was very low. The corresponding tautomeric constants were estimated in a variety of solvents on the basis of UV spectral data. The protonation constants of all compounds were determined in methanol/water mixtures by the spectrophotometric method and discussed with respect to their structural characteristics and solvent properties.

Dynamic Molecular Recognition in Solid State for Separating Mixtures of Isomeric Dicarboxylic Acids

Molecular recognition emerges from non-covalent interactions and is of paramount importance for understanding of biological processes, ranging from enzymatic activity to DNA base pairing, as well as in the design of functional supramolecular systems, for example, molecular motors, sensors, ion receptors, or systems used in waste management. In the specific area of selective anion binding, numerous anion receptors (hosts) and sensors have been developed. The study of anion binding has traditionally been performed in solution where the host often experiences conformational freedom to form complexes with a wide range of guests. However, selectivity in separation has usually been achieved only upon crystallization, emphasizing the importance of intermolecular interactions in rigid crystal environment which lock the conformation of the host giving rise to its selectivity. In this context, recent advances in chemical reactivity achieved using mechanochemistry indicate that the concepts of supramolecular chemistry, such as templating, may be applicable also to solvent-free reactions. Mechanochemical reactivity can be highly dynamic and has thus far been employed for solid-state differentiation between enantiomers, supramolecular metathesis reactions, and for thermodynamic product selection. Although these reactions show specific interaction patterns between molecules comprising their respective solid phases, the possibility of selective binding and separation of target guest molecules from solid mixtures is, besides the pioneering studies by Etter and Caira, still an unexplored area. Here we focus on recognition and separation of isomeric or geometrically similar dicarboxylic acids (Scheme 1) from either their solid or solution mixtures using principles of supramolecular chemistry. The chosen acids belong to a class of guests of high biological and industrial relevance, and a considerable effort has been put into developing their sensors and receptors. Typically, the receptor for each dicarboxylate had to be meticulously designed because of the specific geometry of each acid molecule and their differing physicochemical properties. The importance of separation of the maleic/fumaric acid (H2mal/H2fum) stereoisomeric pair is not only related to the specific diastereomer recognition, but also arises from their conflicting biochemical behavior and abundant use of H2fum in food and pharmaceutical industry. We show here that the flexible polyamine receptor L (Scheme 1) discriminates among H2mal/H2fum diastereomers, succinic acid (H2suc), and three isomers of benzenedicarboxylic acid, by adapting its conformation and finally forming different solid hydrogenbonded (HB) frameworks. Regardless of whether the recognition takes place in the solid state by milling or by crystallization from solution, the resulting supramolecular complexes are the same and the selectivity bias of L towards the guest acids is fully retained. Milling improved yields to quantitative and almost eliminated the use of solvent. L proved to be an exceptional receptor for H2mal, also on the gram scale, excluding it from solid mixtures with even five other acids or from mixtures where there is a large surplus of a competing acid. Reacting L and H2mal in methanol (MeOH) or ethanol (EtOH) solutions yielded isoskeletal solvated solids, 1a (Table 1 and Section S.2 in the Supporting Information), Scheme 1. Dicarboxylic acids and the polyamine host L. The host binds anions as a cation (HL) resulting from protonation of the central amino group.

Desmotropy, Polymorphism, and Solid-State Proton Transfer: Four Solid Forms of an Aromatic o-Hydroxy Schiff Base

The Schiff base derived from salicylaldehyde and 2-amino-3-hydroxypyridine affords a diversity of solid forms, two polymorphic pairs of the enol-imino (D1 a and D1 b) and keto-amino (D2 a and D2 b) desmotropes. The isolated phases, identified by IR spectroscopy, X-ray crystallography, and (13)C cross-polarization/magnetic angle spinning (CP/MAS) NMR spectroscopy, display essentially planar molecular conformations characterized by strong intramolecular hydrogen bonds of the O-H⋅⋅⋅N (D1) or N-H⋅⋅⋅O (D2) type. A change in the position of the proton within this O⋅⋅⋅H⋅⋅⋅N system is accompanied by substantially different molecular conformations and, subsequently, by divergent supramolecular architectures. The appearance and interconversion conditions for each of the four phases have been established on the basis of a number of solution and solvent-free experiments, and evaluated against the results of computational studies. Solid phases readily convert into the most stable form (D1 a) upon exposure to methanol vapor, heating, or by mechanical treatment, and these transformations are accompanied by a change in the color of the sample. The course of thermally induced transformations has been monitored in detail by means of temperature-resolved powder X-ray diffraction and infrared spectroscopy. Upon dissolution, all forms equilibrate immediately, as confirmed by NMR and UV/Vis spectroscopy in several solvents, with the equilibrium shifted far towards the enol tautomer. This study reveals the significance of peripheral groups in the stabilization of metastable tautomers in the solid state.

Spectrometric study of tautomeric and protonation equilibria of o-vanillin Schiff base derivatives and their complexes with Cu(II)

Electronic absorption and emission properties of a series of Schiff bases derived from 2-hydroxy-3-methoxybenzaldehyde and 2-aminopyridine, 2,3-diaminopyridine, 2,6-diaminopyridine, or 3-aminomethylpyridine were studied in solvents of different polarities. The interconversion of the enolimine to the ketoamine tautomeric form was observed for compound 1, 6-methoxy-2-(3-pyridylmethyliminomethyl)phenol, and the corresponding equilibrium constant was estimated in several solvents. Protonation constants of all the investigated compounds were determined spectrophotometrically in the methanol/water 1/4 system. The effect of copper(II) ions on absorption and on the emission spectra of these ligands was examined in the buffered dioxane/water 1/1 system (pH 5.8). Strong complexation of Cu(II) and formation of a 1:1 complex were observed for the bis-Schiff base derived from 2,3-diaminopyridine. The complex of copper(II) with compound 1 was isolated and characterized by elemental analysis, magnetic susceptibility measurement, UV-vis and IR spectrometry.

An Integrated Approach (Thermodynamic, Structural, and Computational) to the Study of Complexation of Alkali-Metal Cations by a Lower-Rim Calix[4]arene Amide Derivative in Acetonitrile

The calix[4]arene secondary-amide derivative L was synthesized, and its complexation with alkali-metal cations in acetonitrile (MeCN) was studied by means of spectrophotometric, NMR, conductometric, and microcalorimetric titrations at 25 °C. The stability constants of the 1:1 (metal/ligand) complexes determined by different methods were in excellent agreement. For the complexation of M(+) (M = Li, Na, K) with L, both enthalpic and entropic contributions were favorable, with their values and mutual relations being quite strongly dependent on the cation. The enthalpic and overall stability was the largest in the case of the sodium complex. Molecular and crystal structures of free L, its methanol and MeCN solvates, the sodium complex, and its MeCN solvate were determined by single-crystal X-ray diffraction. The inclusion of a MeCN molecule in the calixarene hydrophobic cavity was observed both in solution and in the solid state. This specific interaction was found to be stronger in the case of metal complexes compared to the free ligand because of the better preorganization of the hydrophobic cone to accept the solvent molecule. Density functional theory calculations showed that the flattened cone conformation (C(2) point group) of L was generally more favorable than the square cone conformation (C(4) point group). In the complex with Na(+), L was in square cone conformation, whereas in its adduct with MeCN, the conformation was slightly distorted from the full symmetry. These conformations were in agreement with those observed in the solid state. The classical molecular dynamics simulations indicated that the MeCN molecule enters the L hydrophobic cavity of both the free ligand and its alkali-metal complexes. The inclusion of MeCN in the cone of free L was accompanied by the conformational change from C(2) to C(4) symmetry. As in solution studies, in the case of ML(+) complexes, an allosteric effect was observed: the ligand was already in the appropriate square cone conformation to bind the solvent molecule, allowing it to more easily and faster enter the calixarene cavity.

Revision of iron(III)-citrate speciation in aqueous solution. Voltammetric and spectrophotometric studies.

A detailed study of iron (III)-citrate speciation in aqueous solution (θ=25°C, I(c)=0.7 mol L(-1)) was carried out by voltammetric and UV-vis spectrophotometric measurements and the obtained data were used for reconciled characterization of iron (III)-citrate complexes. Four different redox processes were registered in the voltammograms: at 0.1 V (pH=5.5) which corresponded to the reduction of iron(III)-monocitrate species (Fe:cit=1:1), at about -0.1 V (pH=5.5) that was related to the reduction of FeL(2)(5-), FeL(2)H(4-) and FeL(2)H(2)(3-) complexes, at -0.28 V (pH=5.5) which corresponded to the reduction of polynuclear iron(III)-citrate complex(es), and at -0.4V (pH=7.5) which was probably a consequence of Fe(cit)(2)(OH)(x) species reduction. Reversible redox process at -0.1 V allowed for the determination of iron(III)-citrate species and their stability constants by analyzing E(p) vs. pH and E(p) vs. [L(4-)] dependence. The UV-vis spectra recorded at varied pH revealed four different spectrally active species: FeLH (logβ=25.69), FeL(2)H(2)(3-) (log β=48.06), FeL(2)H(4-) (log β=44.60), and FeL(2)(5-) (log β=38.85). The stability constants obtained by spectrophotometry were in agreement with those determined electrochemically. The UV-vis spectra recorded at various citrate concentrations (pH=2.0) supported the results of spectrophotometric-potentiometric titration.

Interactions of Multicationic Bis(guanidiniocarbonylpyrrole) Receptors with Double‐Stranded Nucleic Acids: Syntheses, Binding Studies, and Atomic Force Microscopy Imaging

Compounds 1-3, composed of two guanidiniocarbonylpyrrole moieties linked by oligoamide bridges and differing in number and type of basic groups, were prepared. The sites and degree of protonation of 1-3 depend strongly on the pH value. The interactions of these compounds with several double-stranded (ds) DNA and dsRNA were investigated by means of UV/Vis and CD spectroscopy as well as isothermal titration microcalorimetry (ITC). These studies revealed that the binding of 1-3 to the polynucleotides is driven by three factors, the presence of aliphatic amino groups, the protonation state of the compounds, and the steric properties of the polynucleotide binding site, that is, the shape and structure of their grooves. The results obtained by all applied methods consistently indicated that receptors 1-3 bind to the minor groove of DNA, but, by contrast, to the major groove of RNA. Additionally, it was shown by atomic force microscopy (AFM) imaging that upon interaction of compound 2 with calf thymus (ct) DNA induced aggregation of the DNA occurs, leading to pronounced changes in its secondary structure.

Supramolecular stabilization of metastable tautomers in solution and the solid state.

This work presents a successful application of a recently reported supramolecular strategy for stabilization of metastable tautomers in cocrystals to monocomponent, non-heterocyclic, tautomeric solids. Quantum-chemical computations and solution studies show that the investigated Schiff base molecule, derived from 3-methoxysalicylaldehyde and 2-amino-3-hydroxypyridine (ap), is far more stable as the enol tautomer. In the solid state, however, in all three obtained polymorphic forms it exists solely as the keto tautomer, in each case stabilized by an unexpected hydrogen-bonding pattern. Computations have shown that hydrogen bonding of the investigated Schiff base with suitable molecules shifts the tautomeric equilibrium to the less stable keto form. The extremes to which supramolecular stabilization can lead are demonstrated by the two polymorphs of molecular complexes of the Schiff base with ap. The molecules of both constituents of molecular complexes are present as metastable tautomers (keto anion and protonated pyridine, respectively), which stabilize each other through a very strong hydrogen bond. All the obtained solid forms proved stable in various solid-state and solvent-mediated methods used to establish their relative thermodynamic stabilities and possible interconversion conditions.