Walter Amoros

Construction of Reference Chromosome-Scale Pseudomolecules for Potato: Integrating the Potato Genome with Genetic and Physical Maps

The genome of potato, a major global food crop, was recently sequenced. The work presented here details the integration of the potato reference genome (DM) with a new sequence-tagged site marker−based linkage map and other physical and genetic maps of potato and the closely related species tomato. Primary anchoring of the DM genome assembly was accomplished by the use of a diploid segregating population, which was genotyped with several types of molecular genetic markers to construct a new ~936 cM linkage map comprising 2469 marker loci. In silico anchoring approaches used genetic and physical maps from the diploid potato genotype RH89-039-16 (RH) and tomato. This combined approach has allowed 951 superscaffolds to be ordered into pseudomolecules corresponding to the 12 potato chromosomes. These pseudomolecules represent 674 Mb (~93%) of the 723 Mb genome assembly and 37,482 (~96%) of the 39,031 predicted genes. The superscaffold order and orientation within the pseudomolecules are closely collinear with independently constructed high density linkage maps. Comparisons between marker distribution and physical location reveal regions of greater and lesser recombination, as well as regions exhibiting significant segregation distortion. The work presented here has led to a greatly improved ordering of the potato reference genome superscaffolds into chromosomal “pseudomolecules”.

Extreme salinity as a challenge to grow potatoes under Mars-like soil conditions: targeting promising genotypes.

One of the future challenges to produce food in a Mars environment will be the optimization of resources through the potential use of the Martian substratum for growing crops as a part of bioregenerative food systems. In vitro plantlets from 65 potato genotypes were rooted in peat-pellets substratum and transplanted in pots filled with Mars-like soil from La Joya desert in Southern Peru. The Mars-like soil was characterized by extreme salinity (an electric conductivity of 19.3 and 52.6 dS m −1 under 1 : 1 and saturation extract of the soil solution, respectively) and plants grown in it were under sub-optimum physiological status indicated by average maximum stomatal conductance 2 O m −2 s −1 even after irrigation. 40% of the genotypes survived and yielded (0.3–5.2 g tuber plant −1 ) where CIP.397099.4, CIP.396311.1 and CIP.390478.9 were targeted as promising materials with 9.3, 8.9 and 5.8% of fresh tuber yield in relation to the control conditions. A combination of appropriate genotypes and soil management will be crucial to withstand extreme salinity, a problem also important in agriculture on Earth that requires more detailed follow-up studies.