Weicheng Liu

Genomic Analysis of the ASMT Gene Family in Solanum lycopersicum.

Acetylserotonin methyltransferase (ASMT) is the last enzyme of melatonin biosynthesis and may play a rate-limiting role in the melatonin production of plants. In this study, systematic analysis of the ASMT gene family in tomato (Solanum lycopersicum Mill) has been presented by the integration of the structural features, phylogenetic relationships, exon/intron configuration, and expression profile during growth and development, as well as biotic stresses. The results revealed that the tomato genome encoded a minimum of 14 members, containing three probable encoded pseudogenes. Chromosome mapping indicated that the family had probably expanded via tandem duplication events. Genome-wide RNA-seq and qRT-PCR based gene expression analysis revealed that almost half of the SlASMT genes were expressed in at least one of the experimental stages studied and also showed differential accumulation. Furthermore, the tandem duplicated SlASMT genes showed differential expression levels, which indicated probable functional divergence during the course of the evolution. Finally, this study also determined that some SlASMT genes were induced by multiple pathogens. The results suggested that these genes could be involved in tomato plant response to biotic stresses.

Recovery of photosynthesis, sucrose metabolism, and proteolytic enzymes in Kandelia obovata from rare cold events in the northernmost mangrove, China

IntroductionUnderstanding how mangroves respond to rare cold events has implications for both restoration and conservation under climate change scenarios. This study investigated the responses of photosynthesis and activities of key enzymes involving carbon and nitrogen metabolism at different ages of Kandelia obovata to a rare cold event in the winter of 2010.MethodsThis study took place on Ximen Island, Zhejiang Province, China. We measured the physiological recovery of 2–3-, 5–6-, 9–10- and 54–55-year-old K. obovata trees after freezing injury in February and March in 2011 and 2012, respectively.ResultsChilling injury index and electrolyte leakage of K. obovata increased with increasing tree age in the winter of 2010, and electrolyte leakage in K. obovata at different ages in the winter of 2010 was far higher than that in the winter of 2011. The rare cold events significantly changed the recoveries of the leaf net photosynthetic rate (Pn) and stomatal conductance (Gs); ratios of chlorophyll a/chlorophyll b (Chl a/Chl b); contents of total soluble sugar (TSS), sucrose, free amino acid (FAA), and soluble protein; and activities of sucrose phosphate synthase (SPS), endopeptidase, and carboxypeptidase in K. obovata at different ages. These effects were mainly due to changes in the physiological mechanism in the 2-year-old trees. A clear decrease in Pn of the 2-year-old trees was observed in February 2011, as exemplified by reductions in ratios of Chl a/Chl b and chlorophyll/carotenoid (Chl/Car), as well as inhibition of the levels of TSS and FAA (osmotic substances). During recovery in 2011 and 2012, the activities of SPS and sucrose synthase (SS) were responsible for sucrose synthesis after the rare cold events in 2011, but only SPS activity was one of the main factors contributing to the metabolism of stachyose to sucrose without cold damage in 2012. Carboxypeptidase played a more important role than endopeptidase during protein hydrolysis after the rare cold events.ConclusionsThe results suggest that the recovery of photosynthetic capacity in K. obovata was changed after a rare cold event, which is associated with pigment components and activities of SS, SPS, and carboxypeptidase, especially the seedlings.

Erratum to: Mechanisms on inhibition of photosynthesis in Kandelia obovata due to extreme cold events under climate change

Author details Zhejiang Mariculture Research Institute, Zhejiang Key Laboratory of Exploitation and Preservation of Coastal Bio-resource, Wenzhou 325005, Zhejiang, People’s Republic of China. Nanji Islands National Marine Nature Reserve Administration, Pingyang 325401, People’s Republic of China. Key Laboratory of the Ministry of Eduction for Coastal and Wetland Ecosystem, College of the Environment and Ecology, Xiamen University, Xiamen 361005, People’s Republic of China.

The Tryptophan Decarboxylase in Solanum lycopersicum

Melatonin plays an important role in plant growth, development, and environmental stress. In this study, a systematic analysis of tomato tryptophan decarboxylase (SlTrpDC), which is the first enzyme of melatonin biosynthesis, was conducted by integrating structural features, phylogenetic relationships, an exon/intron feature, and a divergent expression profile. The results determined that the tomato genome encoded five members (SlTrpDC1-SlTrpDC5). The phylogenetic relationships indicated that gene expansion was proposed as the major mode of evolution of the TrpDC genes from the different plant algae species to the higher plants species. The analyses of the exon/intron configurations revealed that the intron loss events occurred during the structural evolution of the TrpDCs in plants. Additionally, the RNA-seq and qRT-PCR analysis revealed that the expression of the SlTrpDC3 was high in all of the tested tissues, while the SlTrpDC4 and SlTrpDC5 were not expressed. The expression patterns of the remaining two (SlTrpDC1 and SlTrpDC2) were tissue-specific, which indicated that these genes may play important roles within the different tissues. No expression difference was observed in the tomato plants in response to the biotic stresses. This study will expand the current knowledge of the roles of the TrpDC genes in tomato growth and development.

The complete mitochondrial genome of Polydactylus sextarius (Teleostei, Mugiliformes)

Abstract The complete mitogenome of Polydactylus sextarius was firstly determined in this study using a long polymerase chain reaction (PCR) method and genome walking. It is 16,836 bp in length and has 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and 1 control region. The genes composition and order of which are similar to most other vertebrates. All mitochondrial genes are encoded on the heavy strand, except for eight tRNA and ND6 genes. The overall base composition of the heavy strand is 27.4% A, 26.0% T, 29.9% C, and 16.7% G, with a slight AT bias of 53.4%. There are eight regions of gene overlap totaling 27 bp and 16 intergenic spacer regions totaling 344 bp. The mitogenome sequence of P. sextarius could contribute to the solution of its phylogenetic position within Polynemidae fishes based on the whole mitogenomic data.