Wellington Ronildo Clarindo

The polyploidy and its key role in plant breeding

AbstractMain conclusionThis article provides an up-to-date review concerning from basic issues of polyploidy to aspects regarding the relevance and role of both natural and artificial polyploids in plant breeding programs. Polyploidy is a major force in the evolution of both wild and cultivated plants. Polyploid organisms often exhibit increased vigor and, in some cases, outperform their diploid relatives in several aspects. This remarkable superiority of polyploids has been the target of many plant breeders in the last century, who have induced polyploidy and/or used natural polyploids in many ways to obtain increasingly improved plant cultivars. Some of the most important consequences of polyploidy for plant breeding are the increment in plant organs (“gigas” effect), buffering of deleterious mutations, increased heterozygosity, and heterosis (hybrid vigor). Regarding such features as tools, cultivars have been generated with higher yield levels, improving the product quality and increasing the tolerance to both biotic and abiotic stresses. In some cases, when the crossing between two species is not possible because of differences in ploidy level, polyploids can be used as a bridge for gene transferring between them. In addition, polyploidy often results in reduced fertility due to meiotic errors, allowing the production of seedless varieties. On the other hand, the genome doubling in a newly formed sterile hybrid allows the restoration of its fertility. Based on these aspects, the present review initially concerns the origin, frequency and classification of the polyploids, progressing to show the revolution promoted by the discovery of natural polyploids and polyploidization induction in the breeding program status of distinct crops.

Revisiting the DNA C-values of the genome size-standards used in plant flow cytometry to choose the "best primary standards".

Flow cytometry (FCM) techniques have enabled characterization of the genome size for various plant species. In order to measure the nuclear genome size of a species, reference standards with well-established DNA content are necessary. However, different 2C-values have been described for the same species used as reference standard. This fact has brought about inaccurate genome measurements, making relevant the establishment of optimal DNA reference standards for plant cytometric analyses. Our work revisited the genome size of Arabidopsis thaliana and other seven plant standards, which were denominated “Doležel’s standard set” and have been widely used in plant DNA measurements. These eight plant standards were reassessed for a comparative measurement of their DNA content values, using each plant species as primary standard in a cascade-like manner, from A. thaliana to Allium cepa. The genome size values obtained here were compared to those reported in the literature by statistical analyses. As a result, Raphanus sativus and Drosophila melanogaster were considered the most inadequate primary standards, whereas A. thaliana, Solanum lycopersicum and Pisum sativum were found to be the most suitable.

C-value reassessment of plant standards: an image cytometry approach

Image cytometry (ICM) has been used to measure DNA 2C-values by evaluating the optical density of Feulgen-stained nuclei. This optical measurement is carried out using three basic tools: microscopy, digital video camera, and image analysis software. Because ICM has been applied to plants, some authors have remarked that studies should be performed before this technique can be accepted as an accurate method for determination of plant genome size. Based on this, the 2C-value of eight plants, which are widely used as standards in DNA quantifications, was reassessed in a cascade-like manner, from A. thaliana through R. sativus, S. lycopersicum, Glycine max, Z. mays, P. sativum, V. faba, to A. cepa. The mean 2C-values of all plants were statistically compared to the values reported by other authors using flow cytometry and/or ICM. These analyses demonstrated that ICM is an accurate and reliable method for 2C-value measurement, representing an attractive alternative to flow cytometry. Statistical comparison of the results also indicated Glycine max ‘Polanka’ as the most adequate primary standard. However, distinct authors have been advised that 2C DNA content of the reference standard should be close to that of the sample. As three further approaches also revisited the 2C-value of these eight plants, we have thus proposed a mean 2C-value for each eight species.

Genome size and base composition of Bromeliaceae species assessed by flow cytometry

Flow cytometry (FCM) has been used to estimate the nuclear DNA content of Bromeliaceae species, which constitutes relevant information for studies of taxonomy, evolution, genetic diversity, and reproductive biology in bromeliads. Nevertheless, C values have only been estimated for 58 out of the 3,140 existing Bromeliaceae species. Aiming to contribute to the genome database of Bromeliaceae, the current study was carried out to measure the nuclear DNA content and base composition of Bromelioideae and Tillandsioideae species occurring in the Atlantic Rainforest. The most adequate FCM procedure provided histograms exhibiting G0/G1 peaks with coefficients of variation below 5%, so that these histograms were used to measure the mean 2C and AT% values for all collected Bromelioideae and Tillandsioideae species. These values were statistically compared, and dendrograms were plotted. A second comparison was performed among all mean 2C values reported for Pitcairnioideae, Tillandsioideae, and Bromelioideae species. In accordance with previous statistical comparisons, two groups were formed: cluster 1, composed by Tillandsia loliacea, Tillandsia usneoides, and Tillandsia cyanea, and cluster 2, gathering other 69 species. Based on these results, we concluded that FCM was a rapid, accurate, and reliable technique to assess genome size and base composition. Furthermore, the FCM data reported here will contribute to the Monocot and Bromeliaceae database, which still displays several ongoing gaps, especially for endemic species.

Karyotype revised of Pisum sativum using chromosomal DNA amount

Pisum sativum was one of the first plants for which the mitotic karyotype was recognized and the karyogram assembled. These achievements were required owing to the physical mapping of P. sativum, providing data for evolutionary approaches and breeding programs. In spite of significant advances, precise morphometric characterization of chromosomes and karyogram assembly of P. sativum have become a topical problem. The present study proposes an unambiguous classification for the chromosomes of P. sativum, based on classical cytogenetic rules and chromosomal DNA amount. Cytogenetic procedure yielded mitotic cells showing morphologically preserved and stoichiometrically stained chromosomes. Twelve mitotic cells were selected, and the mean values for total, short- and long-arm lengths and DNA amount were measured for each chromosome. Chromosomal DNA amount fully correlated with total chromosome length, whose value proportionally decreases with the amount of DNA. Considering these data, all seven chromosomes could be unambiguously identified, yielding a new cytogenetic classification for P. sativum chromosomes. Moreover, the chromosome pairs were ordered according to the classical cytogenetic rule for assembly of karyograms. Since P. sativum is considered a model plant, it was possible to correlate the newly outlined karyotype with other cytogenetic data and linkage groups.

DNA amount of chicken chromosomes resolved by image cytometry

Abstract Avian karyotypes are remarkably conserved throughout evolution. Hence, studies have given priority to the chicken for characterizing and understanding the chromosome organization in this clade. Chicken chromosomes are conventionally classified as macrochromosomes (MACs), microchromosomes (MICs) and sexual chromosomes (ZW). For expanding karyotype data, the DNA amount of the MACs, ZW and a few MICs have been reported. In spite of the progress, hitherto chicken chromosomes have not been fully classified and characterized, especially MICs, accounting for a gap in evolutionary approaches and genomic projects. The chicken karyotype is considered one of the most challenging for cytogenetic study. This study focused on image cytometry, a quantitative measure of the chromosome DNA amount, to fine-tune morphometric data. The methodology was fundamental to identify and discriminate each MIC, overlapping between MICs and MICs/MACs. Associating these data to classical cytogenetic rules, karyograms were assembled. Mean DNA amount was also used to calculate the percentage equivalent of each chromosome group in the haploid genome. Therefore, image cytometry represented a powerful application that can be used for avian karyotype characterization, opening up a range of possibilities for scientific research.

Karyotype characterization and nuclear DNA content measurement in Bromeliaceae: State of the art and future perspectives

In Bromeliaceae, cytogenetic and flow cytometry analyses have been performed to clarify systematic and evolutionary aspects. Karyotyping approaches have shown the relatively high chromosome number, similar morphology and small size of the chromosomes. These facts have prevented a correct chromosome counting and characterization. Authors have established a basic chromosome number of x = 25 for Bromeliaceae. Recently, one karyomorphological analysis revealed that x = 25 is no longer the basic chromosome number, whose genome may have a polyploid origin. Besides cytogenetic characterization, the 2C DNA content of bromeliads has been measured. Nuclear DNA content has varied from 2C = 0.60 to 2C = 3.34 picograms. Thus, in relation to most angiosperms, the 2C DNA content of Bromeliaceae species as well as their chromosome size can be considered relatively small. In spite of some advances, cytogenetic and flow cytometry data are extremely scarce in this group. In this context, this review reports the state of the art in karyotype characterization and nuclear DNA content measurement in Bromeliaceae, emphasizing the main problems and suggesting prospective solutions and ideas for future research.

Modified protocol for obtaining isolated and high-resolution pachytene chromosomes

The expansion of molecular cytogenetics has called for the evaluation of pachytene chromosomes as targets for in situ hybridization (ISH) and micro-dissection. These techniques represent powerful tools for chromosome identification, karyotype comparison, physical mapping and phylogenetic analyses. Because cytogenetic preparations showing well-individualized and cytoplasm-free chromosomes are pre-requisites for ISH and micro-dissection, this work was performed with the aim of developing an improved methodology to obtain individualized pachytene chromosomes of maize (Zea mays L.). The used protocol, based on two steps of enzymatic treatment for establishment of cell suspension, released the pollen mother cells (PMCs) from maize anthers. All slides, prepared from maize PMC suspensions, showed pachytene cells with at least one individualized bivalent. This result was considered a major methodological advance, since it facilitated the scattering of all bivalents. These chromosomes were digitally straightened and four morphological parameters were established to characterize all ten maize bivalents. Considering the conditions of an excellent pachytene cytogenetic preparation for ISH and micro-dissection, the results showed that the applied methodology provided adequate pachytene chromosomes for distinct purposes and can be adapted for other plant species.