Will F. Figueira

Global warming and recurrent mass bleaching of corals

During 2015–2016, record temperatures triggered a pan-tropical episode of coral bleaching, the third global-scale event since mass bleaching was first documented in the 1980s. Here we examine how and why the severity of recurrent major bleaching events has varied at multiple scales, using aerial and underwater surveys of Australian reefs combined with satellite-derived sea surface temperatures. The distinctive geographic footprints of recurrent bleaching on the Great Barrier Reef in 1998, 2002 and 2016 were determined by the spatial pattern of sea temperatures in each year. Water quality and fishing pressure had minimal effect on the unprecedented bleaching in 2016, suggesting that local protection of reefs affords little or no resistance to extreme heat. Similarly, past exposure to bleaching in 1998 and 2002 did not lessen the severity of bleaching in 2016. Consequently, immediate global action to curb future warming is essential to secure a future for coral reefs.

The tropicalization of temperate marine ecosystems: climate-mediated changes in herbivory and community phase shifts

Climate-driven changes in biotic interactions can profoundly alter ecological communities, particularly when they impact foundation species. In marine systems, changes in herbivory and the consequent loss of dominant habitat forming species can result in dramatic community phase shifts, such as from coral to macroalgal dominance when tropical fish herbivory decreases, and from algal forests to ‘barrens’ when temperate urchin grazing increases. Here, we propose a novel phase-shift away from macroalgal dominance caused by tropical herbivores extending their range into temperate regions. We argue that this phase shift is facilitated by poleward-flowing boundary currents that are creating ocean warming hotspots around the globe, enabling the range expansion of tropical species and increasing their grazing rates in temperate areas. Overgrazing of temperate macroalgae by tropical herbivorous fishes has already occurred in Japan and the Mediterranean. Emerging evidence suggests similar phenomena are occurring in other temperate regions, with increasing occurrence of tropical fishes on temperate reefs.

A review of the biology and ecology of key fishes targeted by coastal fisheries in south-east Australia: identifying critical knowledge gaps required to improve spatial management

Knowledge of the population biology, life-history ecology and scales of pre and post-settlement movement of marine species are needed to inform effective conservation management strategies, particularly when spatial information is required for management purposes such as zoning in Marine Protected Areas. This review provides the most current summary from primary and grey literature on the biology and ecology of several coastal fishes of economic and ecological significance in south-east Australia; identifies key knowledge gaps which may impede the development of effective spatial management; and recommends future research directions and methods. Reviewed species are luderick (Girella tricuspidata), eastern rock blackfish (Girella elevata), yellowfin bream (Acanthopagrus australis), tarwhine (Rhabdosargus sarba), snapper (Pagrus auratus), red morwong (Cheilodactylus fuscus) and eastern blue grouper (Achoerodus viridis). The species have a diverse range of life-histories and population traits, and selected parameters were well studied in several species, such as growth (blue groper, luderick, yellowfin bream, tarwhine, snapper), post-settlement movement (red morwong), and larval ecology (yellowfin bream). However, empirical data on levels of pre- and post-settlement connectivity and real-time movements are not available for most species, and this represents a significant gap for improved spatial management. A multidisciplinary approach incorporating a range of methods including acoustic tracking and telemetry, otolith chemistry, intergenerational markers, and biophysical modelling will provide a more comprehensive understanding of life history parameters, movement and connectivity at scales relevant to MPA planning and monitoring.

Accuracy and Precision of Habitat Structural Complexity Metrics Derived from Underwater Photogrammetry

In tropical reef ecosystems corals are the key habitat builders providing most ecosystem structure, which influences coral reef biodiversity and resilience. Remote sensing applications have progressed significantly and photogrammetry together with application of structure from motion software is emerging as a leading technique to create three-dimensional (3D) models of corals and reefs from which biophysical properties of structural complexity can be quantified. This enables the addressing of a range of important marine research questions, such as what the role of habitat complexity is in driving key ecological processes (i.e., foraging). Yet, it is essential to assess the accuracy and precision of photogrammetric measurements to support their application in mapping, monitoring and quantifying coral reef form and structure. This study evaluated the precision (by repeated modeling) and accuracy (by comparison with laser reference models) of geometry and structural complexity metrics derived from photogrammetric 3D models of marine benthic habitat at two ecologically relevant spatial extents; individual coral colonies of a range of common morphologies and patches of reef area of 100s of square metres. Surface rugosity measurements were generally precise across all morphologies and spatial extents with average differences in the geometry of replicate models of 1–6 mm for coral colonies and 25 mm for the reef area. Precision decreased with complexity of the coral morphology, with metrics for small massive corals being the most precise (1% coefficient of variation (CV) in surface rugosity) and metrics for bottlebrush corals being the least precise (10% CV in surface rugosity). There was no indication however that precision was related to complexity for the patch-scale modelling. The 3D geometry of coral models differed by only 1–3 mm from laser reference models. However, high spatial variation in these differences around the model led to a consistent underestimation of surface rugosity values for all morphs of between 8% and 37%. This study highlights the utility of several off-the-shelf photogrammetry tools for the measurement of structural complexity across a range of scales relevant to ecologist and managers. It also provides important information on the accuracy and precision of these systems which should allow for their targeted use by non-experts in computer vision within these contexts.

Quantifying the response of structural complexity and community composition to environmental change in marine communities

Habitat structural complexity is a key factor shaping marine communities. However, accurate methods for quantifying structural complexity underwater are currently lacking. Loss of structural complexity is linked to ecosystem declines in biodiversity and resilience. We developed new methods using underwater stereo-imagery spanning 4 years (2010-2013) to reconstruct 3D models of coral reef areas and quantified both structural complexity at two spatial resolutions (2.5 and 25 cm) and benthic community composition to characterize changes after an unprecedented thermal anomaly on the west coast of Australia in 2011. Structural complexity increased at both resolutions in quadrats (4 m(2)) that bleached, but not those that did not bleach. Changes in complexity were driven by species-specific responses to warming, highlighting the importance of identifying small-scale dynamics to disentangle ecological responses to disturbance. We demonstrate an effective, repeatable method for quantifying the relationship among community composition, structural complexity and ocean warming, improving predictions of the response of marine ecosystems to environmental change.

Sydney Harbour: a review of anthropogenic impacts on the biodiversity and ecosystem function of one of the world's largest natural harbours

Sydney Harbour is a hotspot for diversity. However, as with estuaries worldwide, its diversity and functioning faces increasing threats from urbanisation. This is the first synthesis of threats and impacts in Sydney Harbour. In total 200 studies were reviewed: 109 focussed on contamination, 58 on habitat modification, 11 addressed non-indigenous species (NIS) and eight investigated fisheries. Metal concentrations in sediments and seaweeds are among the highest recorded worldwide and organic contamination can also be high. Contamination is associated with increased abundances of opportunistic species, and changes in benthic community structure. The Harbour is also heavily invaded, but invaders’ ecological and economic impacts are poorly quantified. Communities within Sydney Harbour are significantly affected by extensive physical modification, with artificial structures supporting more NIS and lower diversity than their natural equivalents. We know little about the effects of fishing on the Harbour’s ecology, and although ocean warming along Sydney is among the fastest in the world, we know little about how the ecosystem will respond to warming. The interactive and cumulative effects of stressors on ecosystem functioning and services in the Harbour are largely unknown. Sustainable management of this iconic natural system requires that knowledge gaps are addressed and translated into coherent environmental plans.

Sydney Harbour: What we do and do not know about a highly diverse estuary

Sydney Harbour is a global hotspot for marine and estuarine diversity. Despite its social, economic and biological value, the available knowledge has not previously been reviewed or synthesised. We systematically reviewed the published literature and consulted experts to establish our current understanding of the Harbour’s natural systems, identify knowledge gaps, and compare Sydney Harbour to other major estuaries worldwide. Of the 110 studies in our review, 81 focussed on ecology or biology, six on the chemistry, 10 on geology and 11 on oceanography. Subtidal rocky reef habitats were the most studied, with a focus on habitat forming macroalgae. In total 586 fish species have been recorded from the Harbour, which is high relative to other major estuaries worldwide. There has been a lack of process studies, and an almost complete absence of substantial time series that constrains our capacity to identify trends, environmental thresholds or major drivers of biotic interactions. We also highlight a lack of knowledge on the ecological functioning of Sydney Harbour, including studies on microbial communities. A sound understanding of the complexity, connectivity and dynamics underlying ecosystem functioning will allow further advances in management for the Harbour and for similarly modified estuaries around the world.

Variable responses of benthic communities to anomalously warm sea temperatures on a high-latitude coral reef

High-latitude reefs support unique ecological communities occurring at the biogeographic boundaries between tropical and temperate marine ecosystems. Due to their lower ambient temperatures, they are regarded as potential refugia for tropical species shifting poleward due to rising sea temperatures. However, acute warming events can cause rapid shifts in the composition of high-latitude reef communities, including range contractions of temperate macroalgae and bleaching-induced mortality in corals. While bleaching has been reported on numerous high-latitude reefs, post-bleaching trajectories of benthic communities are poorly described. Consequently, the longer-term effects of thermal anomalies on high-latitude reefs are difficult to predict. Here, we use an autonomous underwater vehicle to conduct repeated surveys of three 625 m2 plots on a coral-dominated high-latitude reef in the Houtman Abrolhos Islands, Western Australia, over a four-year period spanning a large-magnitude thermal anomaly. Quantification of benthic communities revealed high coral cover (>70%, comprising three main morphospecies) prior to the bleaching event. Plating Montipora was most susceptible to bleaching, but in the plot where it was most abundant, coral cover did not change significantly because of post-bleaching increases in branching Acropora. In the other two plots, coral cover decreased while macroalgal cover increased markedly. Overall, coral cover declined from 73% to 59% over the course of the study, while macroalgal cover increased from 11% to 24%. The significant differences in impacts and post-bleaching trajectories among plots underline the importance of understanding the underlying causes of such variation to improve predictions of how climate change will affect reefs, especially at high-latitudes.

Selective mortality of a coral reef damselfish: role of predator-competitor synergisms

Phenotypic variability within cohorts of juvenile organisms can serve as the basis for selective mortality. Previous studies have demonstrated the important role that predators play in this process but not the impact of competitors on selective predation. We use a combination of lab and field studies to evaluate the effect of the presence of adult competitor damselfish (Dascyllus aruanus and Pomacentrus moluccensis; family Pomacentridae) on the selective mortality of newly-arrived (settled) lemon damselfish (P. moluccensis) by resident predator fishes (Pseudochromis fuscus Pseudochromidae and Cheilodipterus quinquelineatus Apogonidae). Lab trials consisted of mesocosm experiments in which the behaviour, mortality, and physiological condition (measured as lipid content) of surviving P. moluccensis settlers from each of three treatments: (1) predators absent, (2) predators present, and (3) predators and competitors present, were compared. The field study involved stocking newly settled P. moluccensis on natural bommies (patch reefs) which had either been subject to a partial removal of resident fish (predators and competitors) or left alone. Results indicated there was very strong condition-based selective mortality in both the lab and field trials. In both cases there was a strong positive relationship between mortality and the lipid content of surviving fish; implying low-condition fish were selectively removed. The mesocosm trials indicated that the strength of mortality as well as condition selectivity was higher when competitors were present than when they were absent. Behavioural observations in the mesocosm study suggest that attention by juvenile P. moluccensis to the movements and occasional chases of the competitors (especially D. aruanus) reduced their vigilance to the predators. These results suggest the important and interactive roles which condition of newly settled reef fish and interspecific competition can play in the outcomes of post-settlement predation.

Small-scale demographic variability of the biocolor damselfish, Stegastes partitus, in the Florida Keys USA

The demographic responses of reef fish to their environment can be complex and in many cases, quite strong. Growth, mortality, longevity, and even reproductive effort have been demonstrated to vary for the same species of reef fish over scales of 100s to 1,000s of kilometers due to physiological and ecological interactions. Though few studies have explicitly documented it, this sort of habitat-mediated demography can also exist at very local scales. Here we present the results of a 2-year study of the bicolor damselfish, Stegastes partitus, in the Florida Keys, USA. We measured density and distribution, calculated key demographic rates (growth, survival, and fecundity), and characterized the environment (resident fish assemblage, substrate type and complexity, and food availability) of populations living in two adjacent but different habitats, the continuous fore reef and patchy back reef. Fish on the fore reef had an elevated growth rate and asymptotic size, increased mortality, and higher fecundity than fish on the back reef. We identified four potential causative mechanisms for these differences: food availability; competition; intraspecific density-dependent effects; and predation risk. Our data did not support an effect of either food availability or intraspecific density-dependence, but rather suggested that demographic responses are affected by both competition and predation risk.