William P. Connor

Two alternative juvenile life history types for fall Chinook salmon in the Snake River basin

Abstract Fall Chinook salmon Oncorhynchus tshawytscha in the Snake River basin were listed under the Endangered Species Act in 1992. At the time of listing, it was assumed that fall Chinook salmon juveniles in the Snake River basin adhered strictly to an ocean-type life history characterized by saltwater entry at age 0 and first-year wintering in the ocean. Research showed, however, that some fall Chinook salmon juveniles in the Snake River basin spent their first winter in a reservoir and resumed seaward movement the following spring at age 1 (hereafter, reservoir-type juveniles). We collected wild and hatchery ocean-type fall Chinook salmon juveniles in 1997 and wild and hatchery reservoir-type juveniles in 1998 to assess the condition of the reservoir-type juveniles at the onset of seaward movement. The ocean-type juveniles averaged 112–139 mm fork length, and the reservoir-type juveniles averaged 222–224 mm fork length. The large size of the reservoir-type juveniles suggested a high potential for surv...

Influence of Flow and Temperature on Survival of Wild Subyearling Fall Chinook Salmon in the Snake River

Abstract Summer flow augmentation to increase the survival of wild subyearling fall chinook salmon Oncorhynchus tshawytscha is implemented annually to mitigate for the development of the hydropower system in the Snake River basin, but the efficacy of this practice has been disputed. We studied some of the factors affecting survival of wild subyearling fall chinook salmon from capture, tagging, and release in the free-flowing Snake River to the tailrace of the first dam encountered by smolts en route to the sea. We then assessed the effects of summer flow augmentation on survival to the tailrace of this dam. We tagged and released 5,030 wild juvenile fall chinook salmon in the free-flowing Snake River from 1998 to 2000. We separated these tagged fish into four sequential within-year release groups termed cohorts (N = 12). Survival probability estimates (mean ± SE) to the tailrace of the dam for the 12 cohorts when summer flow augmentation was implemented ranged from 36% ± 4% to 88% ± 5%. We fit an ordinary...

Juvenile Life History of Wild Fall Chinook Salmon in the Snake and Clearwater Rivers

Abstract Dam construction in the 1950s and 1960s blocked passage to the historical spawning area of Snake River fall chinook salmon Oncorhynchus tshawytscha. We obtained water temperature data and collected juvenile fall chinook salmon in three present-day spawning areas from 1992 to 2000 to investigate the relation between water temperature and juvenile life history events. We used historical water temperatures and the literature to depict juvenile life history in the historical spawning area. Water temperatures in the three present-day spawning areas differed significantly from winter to spring, when eggs were incubating (P ≤ 0.0001), as well as during spring, when juveniles were rearing and starting seaward migration (P ≤ 0.0001). When water temperatures were warmer, the timing of most life stages was generally earlier. The life stages included fry emergence (r 2 = 0.85, N = 14, P < 0.0001), growth to parr size (r 2 = 0.94, N = 15, P < 0.0001), and smolt emigration (r 2 = 0.93, N = 14, P < 0.0001). The...

Influence of River Conditions on Survival and Travel Time of Snake River Subyearling Fall Chinook Salmon

Abstract From 1995 to 2000, subyearling fall chinook salmon Oncorhynchus tshawytscha reared at Lyons Ferry Hatchery were PIT-tagged at the hatchery, trucked upstream, acclimated, and released into free-flowing sections of the Snake River weekly from early June to mid-July. We estimated survival probabilities and travel time through the lower Snake River and detection probabilities at dams for each weekly release group. The average median time between release and arrival at Lower Granite Dam was 43.5 d. For each group, we split this time into two nearly equal (on average) periods: one when most fish in the group were rearing and one when most fish had apparently begun active seaward migration. The estimated survival for hatchery fish from release to the tailrace of Lower Granite Dam decreased with release date each year. The estimated survival through this reach was significantly correlated with three environmental variables: survival decreased as discharge (“flow”) decreased, as water transparency increas...

Migrational Behavior and Seaward Movement of Wild Subyearling Fall Chinook Salmon in the Snake River

Abstract Flow augmentation increases flow and decreases temperature in reservoirs in the lower Snake River during the seaward migration of wild subyearling fall chinook salmon Oncorhynchus tshawytscha. A study of the migrational behavior and seaward movement of wild subyearling fall chinook salmon in the Snake River was necessary to help understand the efficacy of flow augmentation. We studied fall chinook salmon in the Snake River during 1992–2001. After analyzing mark–recapture data, we deduced that fall chinook salmon passed through at least four migrational phases, including (1) discontinuous downstream dispersal along the shorelines of the free-flowing river, (2) abrupt and mostly continuous downstream dispersal offshore in the free-flowing river, (3) passive, discontinuous downstream dispersal offshore in the first reservoir encountered en route to the sea, and (4) active and mostly continuous seaward migration. We used ordinary-least-squares multiple regression to test the effects of flow (m3/s), t...

Potential for anthropogenic disturbances to influence evolutionary change in the life history of a threatened salmonid

Although evolutionary change within most species is thought to occur slowly, recent studies have identified cases where evolutionary change has apparently occurred over a few generations. Anthropogenically altered environments appear particularly open to rapid evolutionary change over comparatively short time scales. Here, we consider a Pacific salmon population that may have experienced life‐history evolution, in response to habitat alteration, within a few generations. Historically, juvenile fall Chinook salmon (Oncorhynchus tshawytscha) from the Snake River migrated as subyearlings to the ocean. With changed riverine conditions that resulted from hydropower dam construction, some juveniles now migrate as yearlings, but more interestingly, the yearling migration tactic has made a large contribution to adult returns over the last decade. Optimal life‐history models suggest that yearling juvenile migrants currently have a higher fitness than subyearling migrants. Although phenotypic plasticity likely accounts for some of the change in migration tactics, we suggest that evolution also plays a significant role. Evolutionary change prompted by anthropogenic alterations to the environment has general implications for the recovery of endangered species. The case study we present herein illustrates the importance of integrating evolutionary considerations into conservation planning for species at risk.

Detection of PIT-tagged subyearling Chinook salmon at a Snake River dam: Implications for summer flow augmentation

Abstract Rearing subyearling chinook salmon Oncorhynchus tshawytscha (≥60 mm in fork length) were captured in the Snake River and tagged with passive integrated transponders to provide an index of their survival to Lower Granite Dam, the first of eight dams encountered by seaward migrants. Water was released from reservoirs upstream of Lower Granite Dam to augment summer flows and thereby increase subyearling chinook salmon survival. Mean summer flow and maximum summer water temperature in Lower Granite Reservoir were highly correlated (N = 4; r = −0.999). Acknowledging this correlation, we conducted two separate least-squares regressions using detection rate as the dependent variable. Detection rate at Lower Granite Dam was positively related to mean summer flow (N = 4; r 2 = 0.993; P = 0.003) and negatively related to maximum summer water temperature (N = 4; r 2 = 0.984; P = 0.008). Summer flow augmentation increased flow and decreased water temperature in Lower Granite Reservoir especially in low-flow ...

Genetic Characterization of Naturally Spawned Snake River Fall-Run Chinook Salmon

Abstract We sampled juvenile Snake River chinook salmon Oncorhynchus tshawytscha to genetically characterize the endangered Snake River fall-run population. Juveniles from fall and spring–summer lineages coexisted in our sampling areas but were differentiated by large allozyme allele frequency differences. We sorted juveniles by multilocus genotypes into putative fall and spring lineage subsamples and determined lineage composition using maximum likelihood estimation methods. Paired sMEP-1* and PGK-2* genotypes—encoding malic enzyme (NADP+) and phosphoglycerate kinase, respectively—were very effective for sorting juveniles by lineage, and subsamples estimated to be 100% fall lineage were obtained in four annual samples. We examined genetic relationships of these fall lineage juveniles with adjacent populations from the Columbia River and from Lyons Ferry Hatchery, which was established to perpetuate the Snake River fall-run population. Our samples of naturally produced Snake River fall lineage juveniles w...

Postrelease Performance of Hatchery Yearling and Subyearling Fall Chinook Salmon Released into the Snake River

Abstract Two rearing treatments are used at Lyons Ferry Hatchery to produce yearling (age-1) and subyearling (age-0) fall Chinook salmon Oncorhynchus tshawytscha for supplementing production of wild fish in the Snake River. We compared four indicators of yearling and subyearling postrelease performance, namely, seaward movement, condition factor, growth rate, and survival. A standard rearing treatment was used to grow yearlings slowly for 14 months to sizes of 152–162 mm (mean fork length). A second standard rearing treatment was used to grow medium subyearlings at a moderate rate for 5 months to 84–89 mm. Two modified rearing treatments were used to produce large subyearlings that were grown rapidly to 90–103 mm and small subyearlings that were grown slowly to 70–76 mm. We released yearlings in April and subyearlings in June on the typical supplementation schedule. Seaward movement, condition factor, growth, and survival varied among rearing treatments. Yearlings moved seaward fastest for reasons related...

Water Velocity, Turbulence, and Migration Rate of Subyearling Fall Chinook Salmon in the Free-Flowing and Impounded Snake River

Abstract We studied the migratory behavior of subyearling fall Chinook salmon Oncorhynchus tshawytscha in free-flowing and impounded reaches of the Snake River to evaluate the hypothesis that velocity and turbulence are the primary causal mechanisms of downstream migration. The hypothesis states that impoundment reduces velocity and turbulence and alters the migratory behavior of juvenile Chinook salmon as a result of their reduced perception of these cues. At a constant flow (m3/s), both velocity (km/d) and turbulence (the SD of velocity) decreased from riverine to impounded habitat as cross-sectional areas increased. We found evidence for the hypothesis that subyearling Chinook salmon perceive velocity and turbulence cues and respond to these cues by varying their behavior. The percentage of the subyearlings that moved faster than the average current speed decreased as fish made the transition from riverine reaches with high velocities and turbulence to upper reservoir reaches with low velocities and tu...