Won Je Lee

Free-living heterotrophic euglenids from marine sediments of the Gippsland Basin, southeastern Australia

Abstract Twenty-three species and forms from six genera of heterotrophic euglenids (Euglenozoa, Protista) encountered in marine sediments from various stations in the Gippsland Basin, southeastern Australia are described with uninterpreted records based on light microscopy. The records include accounts of one new taxon (Notosolenus caudatus sp. nov.) and of five unidentified taxa. The majority of species described here have also been found at other locations worldwide. I am unable to assess if the new and unidentified species are endemic and if the euglenid flagellate community from the Gippsland Basin is distinctive because of the lack of intensive studies elsewhere.

Ultrastructure and Molecular Phylogenetic Position of Neometanema parovale sp. nov. (Neometanema gen. nov.), a Marine Phagotrophic Euglenid with Skidding Motility

Heteronema is a commonly encountered genus of phagotrophic euglenids that contains very different morphotypes, including elongate gliding species and ovoid skidding forms. We report the first ultrastructural and sequence data from a culture of an ovoid skidding heteronemid, KM051. Cells were 8-23.5 μm long with 22 pellicular strips and a fibrous extracellular layer. The tubular extrusomes had dense centre sections. The feeding apparatus was barely visible by light microscopy, but included two microtubule-supported rods. The flagella had hollow, inflated transition zones, heteromorphic paraxonemal rods, and sheaths of flagellar hairs. The posterior flagellum bore a knob that, unusually, sat >2 μm distal to the flagellar base. No ultrastructural features were uniquely shared by KM051 and the elongate, gliding species Heteronema scaphurum. Conversely, the pellicular microtubule array resembles that in deep-branching primary osmotrophs (Aphagea). 18S ribosomal DNA (18S rDNA) phylogenies showed that KM051 is related to a recently obtained Heteronema c.f. exaratum sequence. These skidding heteronemids are not closely related to H. scaphurum, and instead are closely related to Dinema, Anisonema and specifically, Aphagea. The skidding species in Heteronema are transferred to Neometanema gen. nov. (along with most species of Metanema Klebs, 1893), with KM051 described as Neometanema parovale sp. nov.

Some Free-Living Heterotrophic Flagellates from Marine Sediments of Tropical Australia

The diversity of heterotrophic flagellates was examined at marine sediments around Cape Tribulation, Australia. The species described belong to the Alveolates, Apusomonadidae, Cercomonadida, Choanoflagellida, Cry ptomonadida, Diplomonadida, Euglenozoaincertae sedis, Kathablepharidae, Kinetoplastida, Pedinellids, Stephanopogonidae, Stramenopiles, Stramenopilesincertae sedis, Thaumatomonadidae and Protistaincertae sedis. Among the 51 species from 38 genera encountered in this study is one new taxon:Glissandra similis n. sp., and two new names are introduced:Goniomonas abrupta (Skvortzov 1924) nomen nodum andCercomonas skvortzovi (Skvortzov 1977) nomen nodum. There was little evidence for endemism because most flagellates including one new taxon described here have been reported.

Summer pattern of phytoplankton distribution at a station in jangmok bay

Daily changes in phytoplankton abundance and species composition were monitored from July to September 2003 (n=47) to understand which factors control the abundance at a station in Jangmok Bay. During the study, the phytoplankton community was mainly composed of small cell diatoms and dinoflagellates, and the dominant genera wereChaetoceros,Nitzschia, Skeletonema andThalassionema. Phytoplankton abundance varied significantly from 6.40x104 to 1.22x107 cells/l. The initially high level of phytoplankton abundance was dominated by diatoms, but replacement by dinoflagellates started when the N/P ratio decreased to < 5.0. On the basis of the N/P and Si/N ratios, the sampling period could be divided into two: an inorganic silicate limitation period (ISLP, 14th July-12th of August) and an inorganic nitrogen limitation period (INLP, 13th of August - the end of the study). Phosphate might not limit the growth of phytoplankton assemblages in the bay during the study period. This study suggests that phytoplankton abundance and species composition might be affected by the concentrations of inorganic nutrients (N and Si), and provides baseline information for further studies on plankton dynamics in Jangmok Bay.

Morphological and Molecular Characterization of a New Species of Stephanopogon, Stephanopogon pattersoni n. sp.

Stephanopogon is a taxon of multiciliated protists that is now known to belong to Heterolobosea. Small subunit ribosomal DNA (SSU rDNA) phylogenies indicate that Stephanopogon is closely related to or descended from Percolomonas, a small tetraflagellate with a different feeding structure, thus these morphologically dissimilar taxa are of ongoing evolutionary interest. A new strain of Stephanopogon, KM041, was cultured, then characterized by light microscopy, electron microscopy, and SSU rDNA sequencing. KM041 is 18–35 μm (mean 26.8 μm) long, with six main ventral ciliary rows, one ventro‐lateral ciliary row, and three anterior barbs. It closely resembles Stephanopogon minuta Lei et al. in morphology, and is very closely related to an extinct culture “S. aff. minuta”, yet is markedly dissimilar in SSU rDNA sequence from a different isolate identified as S. minuta. This confirms that there are at least two distinct lineages of S. minuta‐like cells, and we describe KM041 as a new species, Stephanopogon pattersoni n. sp. The ultrastructure of KM041 resembles that of previously studied Stephanopogon species, though it has a novel paraxonemal structure in a few cilia. We note that a sub‐basal‐body pad and bulbous axosome are unlikely to be apomorphies for the Stephanopogon–Percolomonas clade.

Morphological and Molecular Characterisation of Notosolenus urceolatus Larsen and Patterson 1990, a Member of an Understudied Deep-branching Euglenid Group (Petalomonads)

Petalomonads are particularly important for understanding the early evolution of euglenids, but are arguably the least studied major group within this taxon. We have established a culture of the biflagellate petalomonad Notosolenus urceolatus, and conducted electron microscopy observations and molecular phylogenetic analysis. Notosolenus urceolatus has eight pellicular strips bordered by grooves and underlain by close‐set microtubules. There are ventral and dorsal Golgi bodies. Mitochondria apparently contain fibrous inclusions, as in Petalomonas cantuscygni. A previously undocumented type of large, globular extrusome is present instead of the tubular extrusomes characteristic of Euglenozoa. The feeding apparatus lacks rods and vanes, and is partly supported by an “MTR”. The flagella have complex transition zones that are extremely elongated but unswollen. Only the emergent portion of the anterior flagellum has an organised paraxonemal rod, and also has very fine mastigonemes. The basal bodies are offset and lack connecting fibres. 18S rRNA gene phylogenies show that N. urceolatus is closely related to Petalomonas sphagnophila and P. cantuscygni, not Notosolenus ostium, confirming that current generic assignments based on the number of emergent flagella are phylogenetically unreliable, and making it difficult to infer whether features shared by N. urceolatus and P. cantuscygni (for example) are general for petalomonads.

Heterotrophic euglenids from marine sediments of cape tribulation, tropical australia

This paper presents new data on free-living heterotrophic euglenids (Euglenozoa, Protista) that occurred in the marine sediments at Cape Tribulation, Queensland, Australia. Twenty-nine species from 9 genera are described with uninterpreted records based on light microscopy, including one new taxon:Notosolenus capetribulationi n. sp. There was little evidence for endemism because the majority of heterotrophic euglenid species encountered here have been reported or were found from other habitats.

Free-living benthic heterotrophic euglenids from Botany Bay, Australia

Abstract Sixty-two species from 12 genera of heterotrophic euglenids (Euglenozoa, Protista) were found during a long-term, intensive study of marine sediments in Botany Bay (Australia). Of the 62 species, 44 are described with uninterpreted records based on light microscopy. The records include accounts of seven unidentified taxa and one new taxon (Petalomonas gini sp. nov.). Most euglenid flagellates described here have been found at other locations worldwide, but many (rare) species are not reported from any other locations. It is not possible to assess if these species are endemic because of the lack of intensive studies elsewhere. However, these results suggest that the euglenid communities from Botany Bay are distinctive. This article discusses the validity of the Sphenomonadina and Heteronemadina, and morphospecies of heterotrophic euglenids.Abstract Sixty-two species from 12 genera of heterotrophic euglenids (Euglenozoa, Protista) were found during a long-term, intensive study of marine sediments in Botany Bay (Australia). Of the 62 species, 44 are described with uninterpreted records based on light microscopy. The records include accounts of seven unidentified taxa and one new taxon (Petalomonas gini sp. nov.). Most euglenid flagellates described here have been found at other locations worldwide, but many (rare) species are not reported from any other locations. It is not possible to assess if these species are endemic because of the lack of intensive studies elsewhere. However, these results suggest that the euglenid communities from Botany Bay are distinctive. This article discusses the validity of the Sphenomonadina and Heteronemadina, and morphospecies of heterotrophic euglenids.

Temporal Distribution of Pico- and Nanoplankton at a Station in Okkye Bay

In order to understand the temporal distribution of pico- and nanoplankton and factors controlling its distribution at a station in Okkye Bay of Masan Bay located in the southern part of Korea, this study was conducted on two weeks interval from April 2005 to April 2006, and several abiotic and biotic factors were measured. During the study, picoplankton consisted of picoflagellates, cyanobacteria and heterotrophic bacteria, and nanoplankton consisted of nanoflagellates excluding dinoflagellates. The concentration of chlorophyll-a (chl-a) was a mean of , and the nanoplanktonic (

Placement of the unclassified Cyranomonas australis Lee 2002 within a novel clade of Cercozoa

, respectively. The contribution of picoflagellates to the PF abundance varied among the sampling occasions and was a mean of 29 %, but to the PF carbon biomass was 2.6 % only. The PF abundance had significant relationships with water temperature, and silicate and TIN concentrations, suggesting that the PF abundance seemed to be primarily bottom-up regulated. The abundance of heterotrophic bacteria was a mean of and unlike other ecosystems it did not have relationships with chl-a and heterotrophic flagellates (HF), suggesting that bacterial abundance did not seem to be bottom-up or top-down regulated. HF mostly consisted of cells less than and its abundance was a mean of . Of the HF abundance, picoflagellates occupied about 31 %, and occupied about 9 % of the HF carbon biomass. HF grazing activity on heterotrophic bacteria was relatively low and removed about 10 % of bacterial abundance, suggesting that HF might not be major consumers of bacteria and there seems to be other consumers in Okkye Bay. These results suggest that Okkye Bay may have a unique microbial ecosystem.