Wook Han Kim

Biomass accumulation and allocation in soybean associated with genotypic differences in tolerance of nitrogen fixation to water deficits

Nitrogen fixation in soybean (Glycine max [L.] Merr.) is more sensitive to water deficits than many physiological processes and may therefore limit yield under nonirrigated conditions. Tolerance of nitrogen fixation to water deficits has been observed in the cultivar Jackson, however, the physiological basis for this is unclear. It was hypothesized that genotypes that could continue biomass production on limited soil water would prolong nitrogen fixation by continued photosynthate allocation to nodules. An initial greenhouse experiment compared biomass and N accumulation in six genotypes over an 8 d water deficit. Low stress intensity minimized genotypic expression of water-deficit tolerance; nevertheless, Jackson was clearly one of the most tolerant genotypes. In a second experiment, Jackson was compared to SCE82-303 at more severe stress levels. Biomass and N accumulation continued during water deficits for Jackson but ceased in SCE82-303. Individual nodule mass tended to increase during water deficits in Jackson and tended to decrease in SCE82-303, indicating greater allocation of photosynthate to Jacksons nodules in response to water deficits. Biomass accumulation of Jackson was contrasted with the USDA plant introduction (PI) 416937, which also has demonstrated tolerance to water deficits. For water-deficit treatments, total biomass accumulation was negligible for PI416937, but biomass accumulation continued at approximately 64% of the control treatment for Jackson. Transpirational losses for Jackson and PI416937 were approximately the same for the water-deficit treatment, indicating that Jackson had higher water use efficiency (WUE). Isotopic discrimination of 13C relative to12 C also indicated that Jackson had superior WUE during water deficits. Carbon-14 allocation in Jackson was compared to KS4895, a cultivar that was identified as sensitive to water deficits in an initial experiment. The comparison of water-deficit treatments of Jackson with KS4895 indicated that Jackson exported significantly greater amounts of14 C from labeled leaves and allocated approximately four times greater amounts of 14C per g of nodule. Results indicated that Jacksons sustained biomass production during water deficits resulted in the continued allocation of photosynthate to nodules and prolonged nitrogenase activity.

Variation block-based genomics method for crop plants

BackgroundIn contrast with wild species, cultivated crop genomes consist of reshuffled recombination blocks, which occurred by crossing and selection processes. Accordingly, recombination block-based genomics analysis can be an effective approach for the screening of target loci for agricultural traits.ResultsWe propose the variation block method, which is a three-step process for recombination block detection and comparison. The first step is to detect variations by comparing the short-read DNA sequences of the cultivar to the reference genome of the target crop. Next, sequence blocks with variation patterns are examined and defined. The boundaries between the variation-containing sequence blocks are regarded as recombination sites. All the assumed recombination sites in the cultivar set are used to split the genomes, and the resulting sequence regions are termed variation blocks. Finally, the genomes are compared using the variation blocks. The variation block method identified recurring recombination blocks accurately and successfully represented block-level diversities in the publicly available genomes of 31 soybean and 23 rice accessions. The practicality of this approach was demonstrated by the identification of a putative locus determining soybean hilum color.ConclusionsWe suggest that the variation block method is an efficient genomics method for the recombination block-level comparison of crop genomes. We expect that this method will facilitate the development of crop genomics by bringing genomics technologies to the field of crop breeding.

Critical role of peroxisome proliferator activated receptor-δ on body fat reduction in C57BL/6J and human apolipoprotein E2 transgenic mice fed delipidated soybean.

The consumption of soy protein and fiber reduces body fat accumulation; however, the mechanism of this effect has not been clearly understood. We investigated the antiobesogenic effect of soy protein and fiber in two different mouse models. Normolipidemic nonobese C57BL/6J and hyperlipidemic obese human apolipoprotein E2 transgenic mice were fed either delipidated soybean (DLSB) containing soy protein and fiber or a control diet. The DLSB-fed mice showed a significant reduction in body weight gain and adiposity compared with controls, in both C57BL/6J and apoE2 mice. All metabolic parameters were significantly improved in the DLSB group compared with controls: total cholesterol, low-density lipoprotein cholesterol, insulin, and leptin levels were significantly reduced. Adiponectin concentrations were significantly elevated, and glucose tolerance was improved. In both types of DLSB-fed mice, the specific induction of PPAR-δ protein expression was evident in muscle and adipose tissues. The expression of PPAR-δ target genes in the DLSB-fed mice was also significantly altered. Acetyl-CoA carboxylase-1 and fatty acid synthase levels in adipose tissue were downregulated, and uncoupling protein-2 in muscle was upregulated. Intestinal expression of fatty acid transport protein-4, cluster of differentiation-36, and acyl-CoA synthetase were significantly downregulated. We propose that marked activation of PPAR-δ is the primary mechanism mediating the antiobesogenic effect of soybean and that PPAR-δ has multiple actions: induction of thermogenesis in muscle, reduction of fatty acid synthesis in adipose tissue, and reduction of fatty acid uptake in intestinal tissue.