Xavier Mériaux

Hyperspectral and multispectral ocean color inversions to detect Phaeocystis globosa blooms in coastal waters

Identification of phytoplankton groups from space is essential to map and monitor algal blooms in coastal waters, but remains a challenge due to the presence of suspended sediments and dissolved organic matter which interfere with phytoplankton signal. On the basis of field measurements of remote sensing reflectance (Rrs(λ)), bio-optical parameters, and phytoplankton cells enumerations, we assess the feasibility of using multispectral and hyperspectral approaches for detecting spring blooms of Phaeocystis globosa (P. globosa). The two reflectance ratios (Rrs(490) /Rrs(510) and Rrs(442.5) /Rrs(490)), used in the multispectral inversion, suggest that detection of P. globosa blooms are possible from current ocean color sensors. The effects of chlorophyll concentration, colored dissolved organic matter (CDOM), and particulate matter composition on the performance of this multispectral approach are investigated via sensitivity analysis. This analysis indicates that the development of a remote sensing algorithm, based on the values of these two ratios, should include information about CDOM concentration. The hyperspectral inversion is based on the analysis of the second derivative of Rrs(λ) (dλ2 Rrs). Two criteria, based on the position of the maxima and minima of dλ2Rrs, are established to discriminate the P. globosa blooms from diatoms blooms. We show that the position of these extremes is related to the specific absorption spectrum of P. globosa and is significantly correlated with the relative biomass of P. globosa. This result confirms the advantage of a hyperspectral over multispectral inversion for species identification and enumeration from satellite observations of ocean color. Copyright 2008 by the American Geophysical Union.

Development of a Semi-Analytical Algorithm for the Retrieval of Suspended Particulate Matter from Remote Sensing over Clear to Very Turbid Waters

Remote sensing of suspended particulate matter, SPM, from space has long been used to assess its spatio-temporal variability in various coastal areas. The associated algorithms were generally site specific or developed over a relatively narrow range of concentration, which make them inappropriate for global applications (or at least over broad SPM range). In the frame of the GlobCoast project, a large in situ data set of SPM and remote sensing reflectance, Rrs(λ), has been built gathering together measurements from various coastal areas around Europe, French Guiana, North Canada, Vietnam, and China. This data set covers various contrasting coastal environments diversely affected by different biogeochemical and physical processes such as sediment resuspension, phytoplankton bloom events, and rivers discharges (Amazon, Mekong, Yellow river, MacKenzie, etc.). The SPM concentration spans about four orders of magnitude, from 0.15 to 2626 g·m−3. Different empirical and semi-analytical approaches developed to assess SPM from Rrs(λ) were tested over this in situ data set. As none of them provides satisfactory results over the whole SPM range, a generic semi-analytical approach has been developed. This algorithm is based on two standard semi-analytical equations calibrated for low-to-medium and highly turbid waters, respectively. A mixing law has also been developed for intermediate environments. Sources of uncertainties in SPM retrieval such as the bio-optical variability, atmospheric correction errors, and spectral bandwidth have been evaluated. The coefficients involved in these different algorithms have been calculated for ocean color (SeaWiFS, MODIS-A/T, MERIS/OLCI, VIIRS) and high spatial resolution (LandSat8-OLI, and Sentinel2-MSI) sensors. The performance of the proposed algorithm varies only slightly from one sensor to another demonstrating the great potential applicability of the proposed approach over global and contrasting coastal waters.

CDOM-DOC relationship in contrasted coastal waters: implication for DOC retrieval from ocean color remote sensing observation.

Increasing our knowledge on dissolved organic carbon (DOC) spatio-temporal distribution in the coastal ocean represents a crucial challenge for better understanding the role of these ecosystems in the global oceanic carbon cycle. The assessment of DOC concentration from the absorption properties of the colored part of the dissolved organic matter (a(cdom)) was investigated from an extensive data set covering a variety of coastal environments. Our results confirmed that variation in the a(cdom)(412) to DOC ratio (a*(cdom)(412)) can be depicted from the CDOM spectral slope in the UV domain (S(275-295)). They also evidenced that regional first order variation in both a*(cdom)(412) and S(275-295) are highly correlated to variation in a(cdom)(412). From these observations, generalized relationships for estimating a*(cdom)(412) from S(275-295) or a(cdom)(412) were parameterized from our development sites (N = 158; English Channel, French Guiana, Hai Phong Bay) and tested against an independent data set covering others coastal regions (N = 223; French Polynesia, Rhone River estuary, Gulf of Maine, Chesapeake Bay, Southern Middle Atlantic Bight) demonstrating the possibility to derive DOC estimates from in situ CDOM optical properties with an average accuracy of ~16% over very contrasted coastal environments (with DOC ranging from 50 to 250 µmol.L(-1)). The applicability of these generalized approaches was evaluated in the context of ocean color remote sensing observation emphasizing the limits of S(275-295)-based formulations and the potential for a(cdom)-based approaches to represent a compelling alternative for assessing synoptic DOC distribution.

Assessment of the colored dissolved organic matter in coastal waters from ocean color remote sensing.

Knowledge on absorption by colored dissolved organic matter, a(cdom), spatio-temporal variability in coastal areas is of fundamental importance in many field of researches related to biogeochemical cycles studies, coastal areas management, as well as land and water interactions in the coastal domain. A new method, based on the theoretical link between the vertical attenuation coefficient, K(d), and the absorption coefficient, has been developed to assess a(cdom). This method, confirmed from radiative transfer simulations and in situ measurements, and tested on an independent in situ data set (N = 126), allows a(cdom) to be assessed with a Mean Relative Absolute Difference, MRAD, of 33% over two order of magnitude (from 0.01 to 1.16 m(-1)). In the frame of ocean color observation, K(d) is not directly measured but estimated from the remote sensing reflectance, R(rs). Based on 109 satellite (SeaWiFS) and in situ coincident (i.e. match-up) data points a(cdom) is retrieved with a MRAD value of 37%. This simple model generally presents slightly better performances than recently developed empirical or semi-analytical algorithms.

Determination of backscattering cross section of individual particles from cytometric measurements: a new methodology

A methodology is developed to derive the backscattering cross section of individual particles as measured with the CytoSense (CytoBuoy b.v., NL). This in situ flow cytometer detects light scatter in forward and sideward directions and fluorescence in various spectral bands for a wide range of particles. First, the weighting functions are determined for the forward and sideward detectors to take into account their instrumental response as a function of the scattering angle. The CytoSense values are converted into forward and sideward scattering cross sections. The CytoSense estimates of uniform polystyrene microspheres from 1 to 90 μm are compared with Mie computations. The mean absolute relative differences ΔE are around 33.7% and 23.9% for forward and sideward scattering, respectively. Then, a theoretical relationship is developed to convert sideward scattering into backscattering cross section, from a synthetic database of 495,900 simulations including homogeneous and multi-layered spheres. The relationship follows a power law with a coefficient of determination of 0.95. To test the methodology, a laboratory experiment is carried out on a suspension of silica beads to compare backscattering cross section as measured by the WET Labs ECO-BB9 and derived from CytoSense. Relative differences are between 35% and 60%. They are of the same order of magnitude as the instrumental variability. Differences can be partly explained by the fact that the two instruments do not measure exactly the same parameter: the cross section of individual particles for the CytoSense and the bulk cross section for the ECO-BB9.

Scattering of individual particles from cytometry: tests on phytoplankton cultures

This study presents an application of the Cytosense flow cytometer (CytoBuoy b.v., NL) for the analysis of the optical properties of phytoplankton cells. For the first time, the forward, sideward and backward cross sections (σFSC, σSSC and σbb ) were derived for two species morphologically different (Chlamydomonas concordia and Thalassiosira pseudonana). The objective of this work is to check the validity of the estimates before any applications in the frame of marine optics studies. Thus, estimates of σFSC and σSSC are tested with radiative transfer computations as no in situ measurements are available. A synthetic database is built considering homogeneous, multi-layered spheres, aggregates and cylinders. Scanning electron micrographs were performed to investigate the cell morphology to simulate particles as close as possible to the real cells. This set of numerical results represents a valuable database for many kinds of applications dealing with marine optics. Comparisons showed that the Cytosense estimates for the cultures are consistent with values predicted by the theory. In average, more than 92% of the Cytosense estimates were encompassed by predicted values. The backscattering cross section and the backscattering efficiency were compared with in situ measurements found in the literature wherever possible. Results showed that σbb and Qbb estimations fall within the range of the referenced values.

Evolution of the scattering properties of phytoplankton cells from flow cytometry measurements.

After the exponential growth phase, variability in the scattering efficiency of phytoplankton cells over their complete life cycle is not well characterised. Bulk measurements are impacted by senescent cells and detritrus. Thus the analysis of the evolution of the optical properties thanks to their morphological and/or intra-cellular variations remains poorly studied. Using the Cytosense flow cytometer (CytoBuoy b.v., NL), the temporal course of the forward and sideward efficiencies of two phytoplankton species (Thalassiosira pseudonana and Chlamydomonas concordia) were analyzed during a complete life-cycle. These two species differ considerably from a morphological point of view. Over the whole experiment, the forward and sideward efficiencies of Thalassiosira pseudonana were, on average, respectively 2.2 and 1.6 times higher than the efficiencies of Chlamydomonas concordia. Large intra-species variability of the efficiencies were observed over the life cycle of the considered species. It highlights the importance of considering the optical properties of phytoplankton cells as a function of the population growth stage of the considered species. Furthermore, flow cytometry measurements were combined with radiative transfer simulations and biogeochemical and optical measurements. Results showed that the real refractive index of the chloroplast is a key parameter driving the sideward signal and that a simplistic two-layered model (cytoplasm-chloroplast) seems particularly appropriate to represent the phytoplankton cells.

Evaluation of Junge power law as a tool for atmospheric correction validation

Spatial remote sensing atmospheric correction algorithms validation remains a challenge particulary over land and coastal environment. To assess this type of algorithm in the case of MERIS scheme, we propose a methodology based on the use of in-situ extinction and sky measurements from the world-wide Sun radiometer network AERONET. The spectral dependency in the blue and red derived from the extinction measurements is used to parameterize an aerosol model defined by the Jung power law size distribution in a first step and a chemical composition represented by a refractive index. This model is used to compute the phase function, a main input to a radiative transfer code (successive order of diffusion based) that allows to simulate the atmospheric parameters (radiances, transmittances). A comparison between the diffuse transmittance from sky measurements and that simulated allow to check the validity of the proposed method. The context of the study is calibration and validation in remote sensing using only the radiative properties of the atmosphere. A sensitivity study of the method to various parameters and an error budget will be reported.

Bio-optics and primary production model in case-2 waters: example of the eastern English Channel

Remote sensing represent a powerful tool to estimate chla concentrations and to predict primary production in coastal waters. However, in order to use this tool efficiently in such variable ecosystems we need to increase our knowledge concerning bio-optical properties, phytoplankton community and photosynthetic parameters variability in order to develop adapted regional algorithms. Spatial and temporal variations of these key parameters were investigated during spring 2000 in the English Channel across five mesoscale cruises (BIOPTEL) realised between February and October 2000. From this in situ data set (phytoplankton pigments obtained by HPLC, nutrients concentration, phytoplankton productivity estimated by variable fluorescence technique (Phyto-Pam), yellow substance absorption, particulate matter absorption), we assessed the scales of variation of primary production model inputs in the several identified biological provinces and throughout spring. These in situ observations were used to proceed to sensitivity analyses of a local primary production model. Further, from this local modelisation we discussed on (i) the biases induced by the using of existing algorithms developed to obtain primary production directly from satellite data in such ecosystems and (ii) of the improvements which should be done concerning such general models.

Mesoscale and seasonal bio-optical properties variability in coastal waters using the example of the eastern English Channel during Spring, 2000

Remote sensed chlorophyll α (chlα) maps are useful to proceed to phytoplankton dynamics study and primary production modelization in coastal waters. However, chlα remote sensing depend on the bio-optical characteristics of waters masses which are site-specific and highly variable according to space and time in coastal waters. In order to study the seasonal variability of phytoplankton and bio-optic parameters as well as the factors controlling their spatio-temporal distributions, five mesoscale cruises (BIOPTEL) were carried out in the eastern English Channel during the spring 2000 (between February and October). Phytoplankton absorption spectrum showed a high variability according to space and time due to the algal community composition and the physiological state. Considering these scales of variation, a local model was defined. The variability of the two other components of marine absorption: yellow substances and non algal particles are also presented and related to exogenous parameters such as river flow, temperature and hydrodynamism. Furthermore, in order to appreciate how important are the local IOPs (Inherent Optical Properties) variability on AOPs (Apparent Optical Properties) restitution a sensitivity analysis was realized. In the frame of biomass estimation, marine reflectance were simulated considering the local absorption coefficients rather than the standard ones.