Xiulin An

Cooperativity between two types of hydrogen bond in H3C–HCN–HCN and H3C–HNC–HNC complexes

Hydrogen-bonded clusters, H(3)C-HCN, HCN-HCN, H(3)C-HCN-HCN, H(3)C-HNC, HNC-HNC, and H(3)C-HNC-HNC, have been studied by using ab initio calculations. The optimized structures, harmonic vibrational frequencies, and interaction energies are calculated at the MP2 level with aug-cc-pVTZ basis set. The cooperative effects in the properties of these complexes are investigated quantitatively. A cooperativity contribution of around 10% relative to the total interaction energy was found in the H(3)C-HCN-HCN complex. In the case of H(3)C-HNC-HNC complex, the cooperativity contribution is about 15%. The cooperativity contribution in the single-electron hydrogen bond is larger than that in the hydrogen bond of HCN-HCN and HNC-HNC complexes. NMR chemical shifts, charge transfers, and topological parameters also support such conclusions.

Cooperativity between the Dihydrogen Bond and the N···HC Hydrogen Bond in LiH-(HCN)n Complexes

The cooperativity between the dihydrogen bond and the NHC hydrogen bond in LiH-(HCN)(n) (n=2 and 3) complexes is investigated at the MP2 level of theory. The bond lengths, dipole moments, and energies are analyzed. It is demonstrated that synergetic effects are present in the complexes. The cooperativity contribution of the dihydrogen bond is smaller than that of the NHC hydrogen bond. The three-body energy in systems involving different types of hydrogen bonds is larger than that in the same hydrogen-bonded systems. NBO analyses indicate that orbital interaction, charge transfer, and bond polarization are mainly responsible for the cooperativity between the two types of hydrogen bonds.

Influence of Substitution, Hybridization, and Solvent on the Properties of C−HO Single-Electron Hydrogen Bond in CH3−H2O Complex

The effect of substitution, hybridization, and solvent on the properties of the C...HO single-electron hydrogen bond has been investigated with quantum chemical calculations. Methyl radical, ethyl radical, and vinyl radical are used as the proton acceptors and are paired with water, methanol, HOCl, and vinyl alcohol. Halogenation (Cl) of the proton donor strengthens this type of hydrogen bond. The methyl group in the proton donor and proton acceptor plays a different role in the formation of the C...HO single-electron hydrogen bond. The former is electron-withdrawing, and the latter is electron-donating, both making a constructive contribution to the enhancement of the interaction. The contribution of the methyl group in the proton acceptor is larger than that in the proton donor. The increase of acidity of the proton is helpful to form a single-electron hydrogen bond. As the proton acceptor varies from the methyl radical to the vinyl radical, the interaction strength also increases. The solvent has an enhancing influence on the strength of the C...HO single-electron hydrogen bond. These factors affect the C...HO single-electron hydrogen bond in a similar way that they do other types of hydrogen bonds.

Regulating function of methyl group in strength of CH...O hydrogen bond: a high-level ab initio study.

An ab initio computational study of the regulating function of the methyl group in the strength of the CH...O hydrogen bond (HB) with XCC-H (X = H, CH3, F) as a HB donor and HOY (Y = H, CH3, Cl) as a HB acceptor has been carried out at the MP2/aug-cc-pVDZ and MP2/aug-cc-pVTZ levels. The bond lengths, interaction energies, and stretching frequencies are compared in the gas phase. The results indicate that the methyl substitution of the proton acceptor strengthens the CH...O HB, whereas that of the proton donor weakens the CH...O HB. NBO analysis demonstrates that the methyl group of the proton acceptor is electron-withdrawing and that of the proton donor is electron-donating in the formation of the CH...O HB. The electron-donation of the methyl group in the proton acceptor plays a positive contribution to the formation of the CH...O HB, whereas the electron-withdrawing action of the methyl group in the proton donor plays a negative contribution to the formation of the CH...O HB. The positive contribution of methyl group in the proton acceptor is larger than the negative contribution of methyl group in the proton donor.

Theoretical Study of the Interplay between Lithium Bond and Hydrogen Bond in Complexes Involved with HLi and HCN

The lithium- and hydrogen-bonded complex of HLi-NCH-NCH is studied with ab initio calculations. The optimized structure, vibrational frequencies, and binding energy are calculated at the MP2 level with 6-311++G(2d,2p) basis set. The interplay between lithium bonding and hydrogen bonding in the complex is investigated with these properties. The effect of lithium bonding on the properties of hydrogen bonding is larger than that of hydrogen bonding on the properties of lithium bonding. In the trimer, the binding energies are increased by about 19% and 61% for the lithium and hydrogen bonds, respectively. A big cooperative energy (-5.50 kcal mol(-1)) is observed in the complex. Both the charge transfer and induction effect due to the electrostatic interaction are responsible for the cooperativity in the trimer. The effect of HCN chain length on the lithium bonding has been considered. The natural bond orbital and atoms in molecules analyses indicate that the electrostatic force plays a main role in the lithium bonding. A many-body interaction analysis has also been performed for HLi-(NCH)(N) (N=2-5) systems.

Competition between hydrogen bonds and halogen bonds in complexes of formamidine and hypohalous acids

Quantum chemical calculations have been per-formed for the complexes of formamidine (FA) and hypohalous acid (HOX, X = F, Cl, Br, I) to study their structures, properties, and competition of hydrogen bonds with halogen bonds. Two types of complexes are formed mainly through a hydrogen bond and a halogen bond, respectively, and the cyclic structure is more stable. For the F, Cl, and Br complexes, the hydrogen-bonded one is more stable than the halogen-bonded one, while the halogen-bonded structure is favorable for the I complexes. The associated H-O and X-O bonds are elongated and exhibit a red shift, whereas the distant ones are contracted and display a blue shift. The strength of hydrogen and halogen bonds is affected by F and Li substitutents and it was found that the latter tends to smooth differences in the strength of both types of interactions. The structures, properties, and interaction nature in these complexes have been understood with natural bond orbital (NBO) and atoms in molecules (AIM) theories.

Regulating function of methyl group on the strength of dihydrogen bond in HBeH-HCCH and HMgH-HCCH complexes

The regulating function of methyl group on the strength of dihydrogen bond was investigated in HBeH-HCCH and HMgH-HCCH complexes at the MP2/6-311++G(3df,2p) level. The bond lengths, infrared spectra, interaction energies, and charge transfers were analyzed. The presence of methyl group in the proton acceptor enhances the strength of dihydrogen bond, whereas its presence in the proton donor weakens the strength of dihydrogen bond. The charge analyses indicate that the methyl group in the proton donor and acceptor is electron-donating, thus the methyl group in the proton donor plays a negative role, whereas in the proton acceptor it plays a positive role in the formation of dihydrogen bond.

Comparison of hydrogen and halogen bonds between dimethyl sulfoxide and hypohalous acid: competition and cooperativity

ABSTRACT A theoretical study of the complexes formed between dimethyl sulfoxide (DMSO) and hypohalous acid (HOX, X = Cl, Br, and I) has been carried out at the MP2/aug-cc-pVTZ level. For each HOX, four minima binary complexes were found, two mainly with an OH•••O hydrogen bond and the other two with an OX•••O halogen bond. The hydrogen-bonded complexes are more stable than the halogen-bonded analogues for HOCl and HOBr, while both types of complexes have similar stability in the iodine case. A red shift was found for the associated H–O and X–O bond stretch vibrations and a small blue shift for the distant bonds. As the oxygen of DMSO simultaneously binds with two HOCl molecules, the corresponding interactions are weakened with diminutive effect. This diminutive effect is the largest in the complexes with two OH•••O hydrogen bonds but the smallest in those with two OCl•••O halogen bonds.

Prediction and characterization of halogen bonds involving formamidine and its derivatives.

Ab initio calculations have been carried out for the complexes of formamidine (FA) and some representative halogenated molecules XY (X=Cl, Br, and I; Y=F, CCH, CF3, CN, and NC). The FA-(Z) complex combines with the halogenated molecule through a halogen bond, while the FA-(E) complex is stabilized jointly by both a halogen bond and a X⋯H interaction. The FA-(E) complex is more stable than the FA-(Z) counterpart, with the interaction energy of -3.4 to -23.4kcal/mol, indicating that FA is a good electron donor in halogen bonding. The methyl substituent particularly one at the imino nitrogen atom of FA has an enhancing effect on the strength of halogen bond. The similar effect is found for the phenyl and pyridyl substituents, depending on the FA conformation and substitution position of pyridyl. The stability of stronger halogen bonding is mainly attributed to electrostatic and polarization energies, which is different from the weak one with an electrostatic nature.

Novel non-covalent interactions involved with the Al13M cluster (M = Li, Na, K, Cu, Ag, Au)

The complexes of Al13M cluster (M = Li, Na, K, Cu, Ag, Au) and Lewis bases NH3, H2O, C6H6, and HLi have been predicted and characterised. The results showed that the cluster Al13M forms the alkali-bonding or coinage metal-bonding interaction through M with these Lewis bases. These complexes exhibit some similarities and differences in the structures, properties, and nature with conventional molecules. The formation of these interactions has a negligible or small effect on the structures of Al13M. This study combines the cluster Al13M with non-covalent interactions, which is of great importance in supramolecular chemistry.