Yamuna Kunhi Mouvenchery

Cation-mediated cross-linking in natural organic matter: a review

Interactions between cations and natural organic matter (NOM) are central for the stability of organic matter, formation of supramolecular NOM structure, formation of organo-mineral associations, soil aggregation and binding of organic contaminants. The effect of multivalent cations on environmental functionalities of NOM strongly depends on the relative importance between intramolecular complexation and intermolecular cross-linking, the degree of which will be determined by the spatial arrangement of the hydrophilic functional groups in NOM. This literature review seeks to evaluate the current state of the art regarding the relevance of intermolecular cross-links via bridges of multivalent cations. Cross-linking has been suggested to explain among others aggregate stability, retarded dissolved organic matter release, reduced organic matter (OM) solubility as well as increase in degree and nonlinearity of sorption or organic chemicals to NOM. Although the cross-linking mechanism has been suggested in numerous studies, it has not yet been verified directly. The dynamics of the intermolecular cross-links, their persistence as well as their interplay with OM and their influence on stability and bioavailability of organic chemicals is up to now unknown. The major challenge in this context is the development of a suitable combination of experimental and instrumental techniques and relating the results to molecular and physicochemical models on the basis of targeted combination of spectroscopic, molecular modelling and thermoanalytical methods.

Restructuring of a Peat in Interaction with Multivalent Cations: Effect of Cation Type and Aging Time

It is assumed to be common knowledge that multivalent cations cross-link soil organic matter (SOM) molecules via cation bridges (CaB). The concept has not been explicitly demonstrated in solid SOM by targeted experiments, yet. Therefore, the requirements for and characteristics of CaB remain unidentified. In this study, a combined experimental and molecular modeling approach was adopted to investigate the interaction of cations on a peat OM from physicochemical perspective. Before treatment with salt solutions of Al3+, Ca2+ or Na+, respectively, the original exchangeable cations were removed using cation exchange resin. Cation treatment was conducted at two different values of pH prior to adjusting pH to 4.1. Cation sorption is slower (>>2 h) than deprotonation of functional groups (<2 h) and was described by a Langmuir model. The maximum uptake increased with pH of cation addition and decreased with increasing cation valency. Sorption coefficients were similar for all cations and at both pH. This contradicts the general expectations for electrostatic interactions, suggesting that not only the interaction chemistry but also spatial distribution of functional groups in OM determines binding of cations in this peat. The reaction of contact angle, matrix rigidity due to water molecule bridges (WaMB) and molecular mobility of water (NMR analysis) suggested that cross-linking via CaB has low relevance in this peat. This unexpected finding is probably due to the low cation exchange capacity, resulting in low abundance of charged functionalities. Molecular modeling demonstrates that large average distances between functionalities (∼3 nm in this peat) cannot be bridged by CaB-WaMB associations. However, aging strongly increased matrix rigidity, suggesting successive increase of WaMB size to connect functionalities and thus increasing degree of cross-linking by CaB-WaMB associations. Results thus demonstrated that the physicochemical structure of OM is decisive for CaB and aging-induced structural reorganisation can enhance cross-link formation.

Potential of AFM-nanothermal analysis to study the microscale thermal characteristics in soils and natural organic matter (NOM)

PurposeThis exploratory study evaluates the potential of nanothermal analysis (nTA) coupled with atomic force microscopy (AFM) of soil samples for understanding physicochemical processes in soil and for linking the nanospatial and microspatial distribution of thermal characteristics with the macroscopic properties of soil samples.Materials and methodsSoil and reference samples were investigated by differential scanning calorimetry and AFM-nTA. nTA was conducted on 16 points of each AFM image in two subsequent heating cycles (55–120°C and 55–300°C, respectively). Thermograms were subdivided into characteristic types and their spatial distribution was compared between sample replicates and materials.Results and discussionThermogram types consisted of partly structured expansion and compression phases, suggesting material-specific thermal profiles. The distribution of thermogram types reflected sample-dependent nanoscale and microscale heterogeneity. Indications for water molecule bridge transitions were found by nTA in peat and soil. Organic materials generally revealed strong expansion and irreversible compression phases, latter probably due to the collapse of pore and aggregate structures. In contrast to charcoal and manure, peat shows strong expansion below 120°C and compression only above 120°C.ConclusionsAll investigated samples are heterogeneous on the nanoscale and microscale with respect to thermal behaviour. AFM-nTA allows distinguishing numerous different materials on nanometre and micrometre scales in soil samples. The material-dependent characteristics will help in understanding and learning more about the nanoscale distribution of different materials and properties. Related to the macroscopic thermal behaviour, this will allow studying links between the properties of biogeochemical interfaces and the processes governed by them.

Interaction of minerals, organic matter, and microorganisms during biogeochemical interface formation as shown by a series of artificial soil experiments

Our understanding of the interactions between minerals, organic matter, and microorganisms at so-called biogeochemical interfaces in soil is still hampered by the inherent complexity of these systems. Artificial soil maturation experiments can help to bridge a gap in complexity between simple abiotic sorption experiments and larger-scale field experiments. By controlling other soil-forming factors, the effect of a particular variable can be identified in a simplified system. Here, we review the findings of a series of artificial soil incubation experiments with the aim of revealing general trends and conclusions. The artificial soils were designed to determine the effect of mineral composition and charcoal presence on the development of abiotic and biotic soil properties during maturation. In particular, the development of soil aggregates, organic matter (OM) composition and turnover, sorption properties, and the establishment of microbial community composition and function were considered. The main objectives of the research were to determine (1) how surface properties and sorption of chemicals modify biogeochemical interfaces; (2) how much time is required to form aggregates from mixtures of pure minerals, OM, and a microbial inoculum; and (3) how the presence of different mineral and charcoal surfaces affects aggregation, OM turnover, and the development of microbial community composition.

Development of antibody-labelled superparamagnetic nanoparticles for the visualisation of benzo[a]pyrene in porous media with magnetic resonance imaging

Biogeochemical interfaces in soil are dynamic in the spatial and temporal domain and require advanced visualisation and quantification tools to link in vitro experiments with natural systems. This study presents the development, characterization and application of functional nanoparticles coated with monoclonal antibodies to visualise the distribution of benzo[a]pyrene in porous media using magnetic resonance imaging. The labelled particles are 450 nm in diameter and interact with benzo[a]pyrene covalently bound to silanized silica gel. They did not bind to benzo[a]pyrene adsorbed to plain silica gel. Although unspecific filtration was low, washing steps are required for visualisation. The ability to visualise benzo[a]pyrene is inversely correlated to the heterogeneity of the soil materials. There are access restrictions to narrow pore spaces which allow the visualisation of only those pathways which are also accessible to bacteria and hydrocolloids. The production of the particles is applicable to other antibodies which extends the range of potential target contaminants.

Physical long-term regeneration dynamics of soil organic matter as followed by 1H solid-state NMR methods

Environmental context The mobility of soil organic matter and water molecules has a strong influence on the availability of fertilisers as well as on the fate of pollutants in soil. Magnetic resonance techniques identified two regimes of mobility change on the molecular level occurring on a timescale of 1 year after initially heating the sample. The results can help to understand the effect of soil type and water content for agricultural use and soil protection. Abstract 1H wide-line solid-state NMR methods have been applied to monitor long-term mobility changes in the supramolecular network of soil organic matter and water induced by short thermal treatment. NMR line widths are a direct measure of the mobility of water molecules and organic matter components. For the first time, we obtained an insight into the long-term physical mechanisms in terms of molecular mobility governing soil organic matter–water interactions. All time series reveal a systematic, attenuated proton demobilisation on time scales with a maximum of 1 year that depends on water content and type of soil. Results are discussed in the context of water molecule bridges and are compared with the results of structural transition temperatures obtained from differential scanning calorimetry measurements. The analysis is based on a porous system with random field characteristics. Two major features, a logarithmic time dependence in the first hours and a linear time dependence at longer times after the heating event, are observed in all investigated samples. In peat samples, a temporary increase of mobility was observed, the point in time depending on water content. The soil organic matter physicochemical matrix aging mechanism could also be relevant for the aging of organic chemicals in soil samples, suggesting a long-term reduction in molecular mobility.

Formation of Water Molecule Bridges Governs Water Sorption Mechanisms in Soil Organic Matter

Adsorption is the main mechanism of capturing water in soil organic matter (SOM) under arid conditions. This process is governed by hydrophilic sites, which are gradually bridged via water molecule bridges (WaMB). Until now, the link between WaMB and other types of water molecules occurring in SOM during sorption has not been systematically investigated. In this work, we compared the formation and stability of WaMB simultaneously with the total water content, strength of water binding, and kinetics of water sorption in a vacuum-dried model SOM (sapric histosol) exposed to different relative water pressures. The same parameters were then determined in SOM exposed to reduced relative pressures. The adsorption resulted in an adsorption isotherm with a Langmuir-like part below a relative pressure of 0.5 and a Brunauer-Emmett-Teller-like isotherm at higher relative pressures. The WaMB formation was observed at a relative pressure of 0.32, which represented the pressure at which Langmuir-like part reached a plateau. The binding energy showed a linear decrease with an increasing pressure; the slope increased at a relative pressure of 0.46. Reduction of relative pressures above 0.46 showed that the water content remained constant, but the binding energy was lowered. In contrast, below a relative pressure of 0.46, the water content decreased, but the binding energy was not changed. The results indicate that in SOM exposed to different relative pressures, water exists in three types: first, it is strongly bound to primary sorption sites (Langmuir-like), second, it occurs in the form of WaMB water, which bridges functional groups and where predominates water-water interactions, and third, it occurs in the form of phase water, which is located in larger pores similar to the pure water phase. The latter either surrounds the WaMB and destabilizes it or, for higher water content, links individual WaMB and successively reduces their stabilizing effect. Formation of phase water leads to swelling processes including plasticizing effects and potential volume changes of SOM. Accordingly, the results suggest that at lower water relative pressures WaMB stabilizes the SOM structure, whereas at higher water relative pressures, it influences the formation of phase water and thereby the total water content in SOM.

Ion-induced modification of the sucrose network and its impact on melting of freeze-dried liposomes. DSC and molecular dynamics study

Disaccharides play an important role in survival of anhydrobiotic organisms during extreme environmental conditions. A key protection feature is their capability to form the hydrogen bond (HB) network in a similar fashion as the one made by water. Since various ions also affect the HB network in completely hydrated systems, it is of a great interest to understand how they impact preservation when incorporated in a disaccharide network. To address this, we employ a combination of experimental and modeling techniques to study behavior of multilamellar 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) liposomes freeze-dried with sucrose in presence of NaCl or NaH2PO4·H2O at various concentrations (0.01-1M). Differential scanning calorimetry (DSC) was employed in order to determine the cooperative unit size (CUS), the number of lipid molecules that constitute a domain of cooperative motion in the liposome, and the melting temperature (Tm). In the absence of salt CUS was estimated to be 122±12, whereas in the presence of NaCl CUS increases more (347±34 for c=1M) than for NaH2PO4·H2O (193±26 for 1M). When it comes to Tm, the situation is reversed; NaCl induces increase by about 1K, while NaH2PO4·H2O by about 10K. These findings clearly demonstrate how different interaction forces-hydrogen bonding, charge pairing, and van der Waals interactions between acyl chains-affect CUS and Tm. Their interplay and contribution of particular interaction was further analyzed with molecular dynamics (MD) simulations. This analysis demonstrated that the HB network of DMPC and sucrose is partially disrupted in the presence of NaCl ions, and even to a greater extent in the case of NaH2PO4·H2O ions. Notably, H2PO4- ions outcompete and replace the sucrose molecules at the DMPC surface, which in turn alters the nature of the DMPC-surrounding interactions, from a weaker HB-dominated to a stronger CP-dominated interaction network.