Yanfeng Ding

Occurrence of perfect and imperfect grains of six japonica rice cultivars as affected by nitrogen fertilization

This study aims to quantify nitrogen (N) effect on occurrence of perfect rice kernel (PRK) and imperfect grains which includes white-belly rice kernel (WBRK), white-core rice kernel (WCRK), green rice kernel (GRK), opaque rice kernel (ORK), and other imperfect grains (OTHERS). Two-year field experiments involving six japonica rice cultivars and seven N treatments were performed. The structural differences between white-belly and white-core tissues were compared using scanning electron microscope. Averaged over cultivars, grain yield increased progressively with N rate. PRK increased with N rate in 2008, but decreased with increased N rate in 2009. WBRK and WCRK decreased as N rate increased for both years. High N input resulted in higher occurrence of GRK and OTHERS for both years. Most starch granules in white-belly tissues are intact and surrounded by globular protein bodies, with many air spaces between them; while in white-core tissues, starch granules are easily broken into many single granules and no protein bodies are visible. Our results suggest that N has suppressing influence on chalky grains but favorable effect on other imperfect grains, and indicate different mechanism between WBRK and WCRK.

The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.).

Key messageNitrogen availability and cytokinin could promote shoot branching in rice, whereas auxin and strigolactone inhibited it. The interaction between nitrogen availability and the three hormones is discussed.AbstractRice shoot branching is strongly affected by nitrogen availability and the plant hormones auxin, cytokinin, and strigolactone; however, the interaction of them in the regulation of rice shoot branching remains a subject of debate. In the present study, nitrogen and the three hormones were used to regulate rice tiller bud growth in the indica rice variety Yangdao 6. Both nitrogen and CK promoted shoot branching in rice, whereas auxin and SL inhibited it. We used HPLC to determine the amounts of endogenous IAA and CK, and we used quantitative real-time PCR analysis to quantify the expression levels of several genes. Nitrogen enhanced the amount of CK by promoting the expression levels of OsIPTs in nodes. In addition, both nitrogen and CK downregulated the expression of genes related to SL synthesis in root and nodes, implying that the inhibition of SL synthesis by nitrogen may occur at least partially through the CK pathway. SL did not significantly reduce the amount of CK or the expression levels of OsIPT genes, but it did significantly reduce the amount of auxin and the auxin transport capacity in nodes. Auxin itself inhibited CK synthesis and promoted SL synthesis in nodes rather than in roots. Furthermore, we found that CK and SL quickly reduced and increased the expression of FC1 in buds, respectively, implying that FC1 might be a common target for the CK and SL pathways. Nitrogen and auxin delayed expression change patterns of FC1, potentially by changing the downstream signals for CK and SL.

Proteomic analysis of proteins related to rice grain chalkiness using iTRAQ and a novel comparison system based on a notched-belly mutant with white-belly

BackgroundGrain chalkiness is a complex trait adversely affecting appearance and milling quality, and therefore has been one of principal targets for rice improvement. Eliminating chalkiness from rice has been a daunting task due to the complex interaction between genotype and environment and the lack of molecular markers. In addition, the molecular mechanisms underlying grain chalkiness formation are still imperfectly understood.ResultsWe identified a notched-belly mutant (DY1102) with high percentage of white-belly, which only occurs in the bottom part proximal to the embryo. Using this mutant, a novel comparison system that can minimize the effect of genetic background and growing environment was developed. An iTRAQ-based comparative display of the proteins between the bottom chalky part and the upper translucent part of grains of DY1102 was performed. A total of 113 proteins responsible for chalkiness formation was identified. Among them, 70 proteins are up-regulated and 43 down-regulated. Approximately half of these differentially expressed proteins involved in central metabolic or regulatory pathways including carbohydrate metabolism (especially cell wall synthesis) and protein synthesis, folding and degradation, providing proteomic confirmation of the notion that chalkiness formation involves diverse but delicately regulated pathways. Protein metabolism was the most abundant category, accounting for 27.4% of the total differentially expressed proteins. In addition, down regulation of PDIL 2–3 and BiP was detected in the chalky tissue, indicating the important role of protein metabolism in grain chalkiness formation.ConclusionsUsing this novel comparison system, our comprehensive survey of endosperm proteomics in the notched-belly mutant provides a valuable proteomic resource for the characterization of pathways contributing to chalkiness formation at molecular and biochemical levels.

Nitrogen fertilizer increases spikelet number per panicle by enhancing cytokinin synthesis in rice

Key messageNitrogen fertilizer enhances local cytokinin synthesis to increase flower numbers in the panicles of rice. Localized cytokinin biosynthesis is an important response to nitrogen.AbstractFlower number per panicle is one of the most important traits in rice productivity determination. The number of flowers is established in the early stages of panicle development. Nitrogen fertilizer application before panicle initiation is well known to increase flower number. Nitrogen increases cytokinin (CKs) biosynthesis in plants, and CKs have very similar effects as nitrogen fertilizer on panicle branching. The effects of nitrogen fertilizer on panicle branching may be mediated by CKs, in which accumulation in the inflorescence meristem can regulate panicle development, resulting in increased numbers of flowers and branches. Adenosine phosphate-isopentenyltransferase (IPT) catalyzes the rate-limiting step of CKs biosynthesis. We analyzed the effect of nitrogen fertilizer (urea) on the expression of OsIPT genes (OsIPTs). The results showed that OsIPTs were markedly increased, and CKs accumulated in panicle when nitrogen fertilizer was applied. CKs biosynthesis in the roots and leaves was not up-regulated by nitrogen. These results suggest that nitrogen fertilizer enhances local CKs synthesis to increase flower numbers in the panicles of rice. Localized CKs biosynthesis is an important response to nitrogen.

The impact of relative humidity, genotypes and fertilizer application rates on panicle, leaf temperature, fertility and seed setting of rice

A series of field and plant growth chamber experiments were conducted in 2006 and 2007 to study how relative humidity (RH), genotypes and nitrogen application rates affect organ temperatures and spikelet fertility rates in rice. It was observed that organ temperatures varied with air temperature, RH, genotype and nitrogen application rate. Increases in RH at constant air temperature and increasing air temperature with a constant RH both increased organ temperatures significantly. Cultivars also exhibited differences in organ temperatures; those cultivars with erect panicles recorded lower organ temperatures than those with droopy panicles under similar climatic conditions. Similarly, cultivars with panicles above the flag leaf had lower temperatures at the panicle when compared to those plants with the panicle below the flag leaf. It was also found that panicle temperature showed a significant negative correlation with both grain filling rate and seed setting rate. Spikelet fertility could be maintained by reducing spikelet temperature under decreasing RH in a high-temperature environment. Panicle fertilizer application rates had a significant effect on the organ and canopy temperatures. The canopy temperature of rice grown with an ample supply of nitrogen was generally cooler than the canopy temperature of a nitrogen-deficient treatment.

Effects of Nitrogen Application Rate and Ratio on Lodging Resistance of Super Rice with Different Genotypes

The objective of this study was to determine the morphology mechanism of nitrogen (N) fertilizer rates and ratio on lodging resistance through analying its effects among lodging index (LI), lodging-related morphological traits and physical strength in basal internodes by comparing japonica and indica super rice cultivars. Field experiments, with three nitrogen levels (0, 150 and 300 kg ha−1) and two ratios of basal to topdressing (8:2 and 5:5) with two super rice cultivars (Yliangyou 2 and Wuyunjing 23), were conducted in the Baolin Farm, Danyang Country, Jiangsu Province, China, in 2011 and 2012. Effects of N fertilizer rates and ratios on morphology of whole plant, morphology traits in basal internodes and culms physical strength parameters were investigated at 20 d after full heading stage. LI of Yliangyou 2 was significant greater than that of Wuyunjing 23 due to larger bending moment by whole plant (WP) with higher plant height and gravity center height. With higher volume of N fertilizer, LI of two super rice cultivars was increased conspicuously. However, no significant effect was detected with increase of panicle fertilizer ratio. The size of breaking strength (M) in basal internodes was the key factor determining LI among N fertilizer treatments. Correlation analysis revealed that M value was positively related bending stress (BS) of Wuyunjing 23 and section modulus (Z) of Yliangyou 2, respectively. The higher N fertilizer levels induced reduction of BS of Wuyunjing 23 due to weak culm and leaf sheath plumpness status and reduced Z of Yliangyou 2 owning to small diameter and culm wall thickness, consequently, influencing their M indirectly. These results suggested that breaking strength was the key factor influencing LI with increase of N fertilizer levels. However, the lodging-related morphology mechanism was different with genotypes. Culm wall thickness and diameter in basal internodes of indica super rice and culm and leaf sheath plumpness status of japonica super rice influenced breaking strength, as well as lodging index, respectively.

Effects of external ABA, GA3 and NAA on the tiller bud outgrowth of rice is related to changes in endogenous hormones

Hormones play an important role in regulating the growth of rice tiller buds. However, little is known about the hormonal changes that occur during tiller bud growth and the mechanism of hormonal regulation of tiller bud growth. Here, two rice cultivars, Yangdao 6 (Indica) and Nanjing 44 (Japonica), were used to investigate the changes in plant hormones during tiller bud growth and the mechanism that underlies the hormonal regulation of tiller bud growth. In the present study, panicles were removed after heading to stimulate the growth of dormant tiller buds located at the elongated upper internodes. At the same time, external abscisic acid (ABA), gibberellic acid (GA3) and α-naphthalene acetic acid (NAA) were applied. The results demonstrated that auxin and cytokinin (CTK) play important and different roles in the regulation of tiller bud growth. Auxin in the nodes inhibits tiller bud growth, while CTK is transferred to the tiller buds to promote growth. The inhibitory effects of GA3 and NAA on tiller bud growth are mainly due to the control of the indole-3-acetic acid (IAA) or CTK contents in plants. As opposed to auxin and CTK, the ABA contents in nodes and tiller buds remained unchanged before tiller bud growth after panicle removal. Meanwhile, external ABA application only slightly slowed the growth of the tiller buds, suggesting that ABA may not be a key regulator of tiller bud growth. These results indicate that auxin, CTK and ABA together likely play roles in the regulation of tiller bud growth.

A proteomic approach to analyze nitrogen- and cytokinin-responsive proteins in rice roots.

Nitrogen plays a central role in rice growth and development because it modulates a wide variety of processes, including cytokinin (CK) metabolism. CK-mediated signaling is also related to nitrogen metabolism. The functional relation between nitrogen and CK are extremely complex and unclear. In this study, a comparative proteomic analysis was carried out to analyze proteins regulated by nitrogen and CK in rice roots. Proteins extracted from rice roots are separated by two-dimensional polyacrylamide gel electrophoresis. Thirty-two protein spots that expressed similarly by nitrogen and CK treatments are selected for identification by mass spectrometry. Of these spots, 28 are successfully identified. These proteins were categorized into classes related to energy, metabolism, disease/defense, protein degradation, signal transduction, transposons, and unclear classification. Energy gives the largest functional category, suggesting that the glycolysis (two enzymes detected) and tricarboxylic acid cycle (six enzymes detected) are accurately regulated by nitrogen and CK, thus promoting the synthesis of amino acid. The identification of novel proteins provides new insights into the coordination of nitrogen and CK in rice. The possible role of these proteins is discussed.

Simulation of future global warming scenarios in rice paddies with an open-field warming facility.

To simulate expected future global warming, hexagonal arrays of infrared heaters have previously been used to warm open-field canopies of upland crops such as wheat. Through the use of concrete-anchored posts, improved software, overhead wires, extensive grounding, and monitoring with a thermal camera, the technology was safely and reliably extended to paddy rice fields. The system maintained canopy temperature increases within 0.5°C of daytime and nighttime set-point differences of 1.3 and 2.7°C 67% of the time.

Top-dressing nitrogen fertilizer rate contributes to decrease culm physical strength by reducing structural carbohydrate content in japonica rice

Abstract Lodging is an important factor limiting rice yield and quality by bending or breaking stem in japonica rice ( Oryza sativa L.) production. The objectives of this study were to determine the mechanism of lodging resistance in japonica rice as affected by carbohydrate components, especially its related arrangement in culm tissue and response to top-dressing nitrogen (N) fertilizer. Field experiments were conducted in Danyang County, Jiangsu Province, China, by using two japonica rice varieties Wuyunjing 23 (lodging-resistance variety) and W3668 (lodging-susceptible variety) with three top-dressing N fertilizer rates (0, 135 and 270 kg N ha −1 ) in 2013 and 2014. Lodging related physical parameters, morphological characteristics and stem carbohydrate components were investigated at 30 d after full heading stage. Results showed that with increasing N fertilizer rates, the lodging rate and lodging index increased rapidly primarily due to significant reduction of breaking strength in two japonica rice varieties. Correlation analysis revealed that breaking strength was significantly and positively correlated with bending stress, but negatively correlated with section modulus, except for significant correlation at W3668 in 2014. Higher stem plumpness status and structural carbohydrate contents significantly enhanced stem stiffness, despite of lower non-structural carbohydrate. With higher N fertilizer rate, the culm wall thickness was almost identical, and culm diameter increased slightly. The structural carbohydrates, especially for lignin content in culm, reduced significantly under high N rate. Further histochemical staining analysis revealed that high N treatments decreased the lignin deposition rapidly in the sclerenchyma cells of mechanical tissue, large vascular bundle and small vascular bundle region, which were consistent with reduction of bending stress, especially for W3668 and thus, resulted in poor stem strength and higher lodging index. These results suggested that structural carbohydrate plays a vital role for improving stem strength in japonica rice. N rate decreased lodging resistance primarily due to poor stem stiffness, by reducing structural carbohydrate content and lignin deposition in the secondary cell wall of lower internode culm tissue.