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Featured researches published by Ye-Ri Kim.


PLOS ONE | 2014

Genetic analysis of genes related to tight junction function in the Korean population with non-syndromic hearing loss.

Min-A Kim; Ye-Ri Kim; Borum Sagong; Hyun-Ju Cho; Jae Woong Bae; Jeongho Kim; Jinwook Lee; Hong-Joon Park; Jae Young Choi; Kyu-Yup Lee; Un-Kyung Kim

Tight junctions (TJs) are essential components of eukaryotic cells, and serve as paracellular barriers and zippers between adjacent tissues. TJs are critical for normal functioning of the organ of Corti, a part of the inner ear that causes loss of sensorineural hearing when damaged. To investigate the relation between genes involved in TJ function and hereditary loss of sensorineural hearing in the Korean population, we selected the TJP2 and CLDN14 genes as candidates for gene screening of 135 Korean individuals. The TJP2 gene, mutation of which causes autosomal dominant non-syndromic hearing loss (ADNSHL), lies at the DFNA51 locus on chromosome 9. The CLDN14 gene, mutation of which causes autosomal recessive non-syndromic hearing loss (ARNSHL), lies at the DFNB29 locus on chromosome 21. In the present study, we conducted genetic analyses of the TJP2 and CLDN14 genes in 87 unrelated patients with ADNSHL and 48 unrelated patients with either ARNSHL or potentially sporadic hearing loss. We identified two pathogenic variations, c.334G>A (p.A112T) and c.3562A>G (p.T1188A), and ten single nucleotide polymorphisms (SNPs) in the TJP2 gene. We found eight non-pathogenic variations in the CLDN14 gene. These findings indicate that, whereas mutation of the TJP2 gene might cause ADNSHL, CLDN14 is not a major causative gene for ARNSHL in the Korean population studied. Our findings may improve the understanding of the genetic cause of non-syndromic hearing loss in the Korean population.


Toxicology Letters | 2016

Galangin prevents aminoglycoside-induced ototoxicity by decreasing mitochondrial production of reactive oxygen species in mouse cochlear cultures

Ye-Ri Kim; Min-A Kim; Hyun-Ju Cho; Se-Kyung Oh; In-Kyu Lee; Un-Kyung Kim; Kyu-Yup Lee

Amikacin is a semi-synthetic aminoglycoside widely used to treat infections caused by gentamicin-resistant gram-negative organisms and nontuberculous mycobacteria. However, the use of this agent often results in ototoxicity due to the overproduction of reactive oxygen species (ROS). Galangin, a natural flavonoid, has been shown to play a protective role against mitochondrial dysfunction by reducing mitochondrial ROS production. In this study, the effect of galangin on amikacin-induced ototoxicity was examined using cultures of cochlear explants. Immunofluorescent staining showed that treatment of inner hair cells (IHCs) and outer hair cells (OHCs) with galangin significantly decreased damage induced by amikacin. Moreover, pretreatment with galangin resulted in decreased amikacin-provoked increase in ROS production in both types of hair cells by MitoSOX-red staining. Attenuation of apoptotic cell death was assessed immunohistochemically using active caspase-3 antibody and with terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay, compared to explants exposed to amikacin alone (P<0.05). These results indicate that galangin protects hair cells in the organ of Corti from amikacin-induced toxicity by reducing the production of mitochondrial ROS. The results of this study suggest that galangin can potentially be used as an antioxidant and antiapoptotic agent to prevent hearing loss caused by aminoglycoside induced-oxidative stress.


PLOS ONE | 2015

Evaluation of the Contribution of the EYA4 and GRHL2 Genes in Korean Patients with Autosomal Dominant Non-Syndromic Hearing Loss

Ye-Ri Kim; Min-A Kim; Borum Sagong; Seung-Hyun Bae; Hyo-Jeong Lee; Hyung-Jong Kim; Jae Young Choi; Kyu-Yup Lee; Un-Kyung Kim

EYA4 and GRHL2 encode transcription factors that play an important role in regulating many developmental stages. Since EYA4 and GRHL2 were identified as the transcription factors for the DFNA10 and DFNA28, 8 EYA4 mutations and 2 GRHL2 mutations have been reported worldwide. However, these genes have been reported in few studies of the Korean population. In this study, we performed a genetic analysis of EYA4 and GRHL2 in 87 unrelated Korean patients with autosomal dominant non-syndromic hearing loss (NSHL). A total of 4 genetic variants in the EYA4 gene were identified, including the 2 nonsense mutations p.S288X and p.Q393X. The novel mutation p.Q393X (c.1177C>T) resulted in a change in the codon at amino acid position 393 from a glutamine to a stop codon. The p.Q393X allele was predicted to encode a truncated protein lacking the entire C-terminal Eya homolog region (Eya HR), which is essential for the interaction with the transcription factor SIX3. The p.S288X (c.863C>A) mutation was found in a Korean family from a previous study. We analyzed p.S288X-linked microsatellite markers and determined that p.S288X might be a founder mutation and a hotspot mutation in Koreans. In GRHL2, a total of 4 genetic variants were identified, but none were associated with hearing loss in Korean patients. This suggests that GRHL2 may not be a main causal gene for autosomal dominant NSHL in Korean patients. In conclusion, our data provide fundamental information to predict the genotypes of Korean patients diagnosed with autosomal dominant NSHL.


Cells Tissues Organs | 2014

Methionine Sulfoxide Reductase A, B1 and B2 Are Likely to Be Involved in the Protection against Oxidative Stress in the Inner Ear

Tae-Jun Kwon; Se-Kyung Oh; Ye-Ri Kim; Min-A Kim; Byeonghyeon Lee; Kwang Shik Choi; Jaetae Lee; Un-Kyung Kim; Kyu-Yup Lee

The methionine sulfoxide reductase (Msr) family of proteins is a class of repair enzymes that reduce methionine-S (MsrA) or methionine-R (MsrB) sulfoxide to methionine. Recent studies have reported that mutations in the MSRB3 gene cause autosomal recessive hearing loss in humans, and in mice MsrB3 deficiency leads to profound hearing loss due to hair cell apoptosis and stereocilia degeneration. However, apart from MsrB3, studies on Msr proteins in the inner ear have not yet been reported. In this study, we identified and characterized Msr expression in the cochlea and vestibule. First, we confirmed RNA expression levels of Msr family members in the cochlea and vestibule using reverse transcription PCR and detected Msr family members in both tissues. We also conducted immunohistochemical staining to localize Msr family members within the cochlea and vestibule. In the cochlea, MsrA was detected in supporting cells, spiral ligament, spiral limbus, Reissners membrane and the spiral ganglion. MsrB1 was specifically expressed in hair cells and the spiral ganglion. MsrB2 was noted in the spiral ganglion, tectorial membrane and stria vascularis. In the vestibule, MsrA and MsrB1 were detected in hair cells and the vestibular ganglion, while MsrB2 was restricted to the vestibular ganglion. In this study, we identified distinct distributions of Msr family members in the organ of Corti and hypothesized that MsrA, MsrB1 and MsrB2 protect proteins in the organ of Corti from oxidative stress.


Molecular Neurobiology | 2018

Exocyst Complex Member EXOC5 Is Required for Survival of Hair Cells and Spiral Ganglion Neurons and Maintenance of Hearing

Byeonghyeon Lee; Jeong-In Baek; Hyehyun Min; Seung-Hyun Bae; Kyeonghye Moon; Min-A Kim; Ye-Ri Kim; Ben Fogelgren; Joshua H. Lipschutz; Kyu-Yup Lee; Jinwoong Bok; Un-Kyung Kim

The exocyst, an octameric protein complex consisting of Exoc1 through Exoc8, was first determined to regulate exocytosis by targeting vesicles to the plasma membrane in yeast to mice. In addition to this fundamental role, the exocyst complex has been implicated in other cellular processes. In this study, we investigated the role of the exocyst in cochlear development and hearing by targeting EXOC5, a central exocyst component. Deleting Exoc5 in the otic epithelium with widely used Cre lines resulted in early lethality. Thus, we generated two different inner ear-specific Exoc5 knockout models by crossing Gfi1Cre mice with Exoc5f/f mice for hair cell-specific deletion (Gfi1Cre/+;Exoc5f/f) and by in utero delivery of rAAV-iCre into the otocyst of embryonic day 12.5 for deletion throughout the otic epithelium (rAAV2/1-iCre;Exoc5f/f). Gfi1Cre/+;Exoc5f/f mice showed relatively normal hair cell morphology until postnatal day 20, after which hair cells underwent apoptosis accompanied by disorganization of stereociliary bundles, resulting in progressive hearing loss. rAAV2/1-iCre;Exoc5f/f mice exhibited abnormal neurite morphology, followed by apoptotic degeneration of spiral ganglion neurons (SGNs) and hair cells, which led to profound and early-onset hearing loss. These results demonstrate that Exoc5 is essential for the normal development and survival of cochlear hair cells and SGNs, as well as the functional maintenance of hearing.


Nanomedicine: Nanotechnology, Biology and Medicine | 2018

Effective PEI-mediated delivery of CRISPR-Cas9 complex for targeted gene therapy

Nari Ryu; Min-A Kim; Dongsik Park; Byeonghyeon Lee; Ye-Ri Kim; K. H. Kim; Jeong-In Baek; Won Jong Kim; Kyu-Yup Lee; Un-Kyung Kim

The-state-of-art CRISPR/Cas9 is one of the most powerful among the approaches being developed to rescue fundamental causes of gene-based inheritable diseases. Several strategies for delivering such genome editing materials have been developed, but the safety, efficacy over time, cost of production, and gene size limitations are still under debate and must be addressed to further improve applications. In this study, we evaluated branched forms of the polyethylenimine (PEI) - branched PEI 25 kDa (BPEI-25K) - and found that it could efficiently deliver CRISPR/Cas9 plasmids. Plasmid DNA expressing both guide RNA and Cas9 to target the Slc26a4 locus was successfully delivered into Neuro2a cells and meditated genome editing within the targeted locus. Our results demonstrated that BPEI-25K is a promising non-viral vector to deliver the CRISPR/Cas9 system in vitro to mediate targeted gene therapy, and these findings contribute to an understanding of CRISPR/Cas9 delivery that may enable development of successful in vivo techniques.


Cell Death and Disease | 2018

Evaluating protective and therapeutic effects of alpha-lipoic acid on cisplatin-induced ototoxicity

K. H. Kim; Byeonghyeon Lee; Ye-Ri Kim; Min-A Kim; Nari Ryu; Da Jung Jung; Un-Kyung Kim; Jeong-In Baek; Kyu-Yup Lee

Cisplatin, a small platinum-containing molecule, is a widely used, highly effective anticancer drug. However, severe side effects have been found in cancer patients treated with cisplatin, including nephrotoxicity, neurotoxicity, and ototoxicity. These cisplatin-induced side effects can have a major impact on patient quality of life, including social development problems in pediatric patients that develop hearing loss. Previous studies have suggested that the major cause of cisplatin-induced ototoxicity is abnormal accumulation of reactive oxygen species (ROS) and oxidative stress. Alpha-lipoic acid (ALA), one of the most effective antioxidants, is known to be involved in the cellular antioxidant system and may have a protective effect on cisplatin-induced ototoxicity. However, the therapeutic effect of ALA on damaged hearing function and its detailed mechanism of action are not fully understood. This study focused on determining whether ALA has a potential as a protective and/or therapeutic agent for cisplatin-induced ototoxicity. Histological and physiological analyses were performed using cisplatin-treated mouse cochlea and HEI-OC1 culture cells in pre- and post-treatment with ALA in vitro and in vivo. We found that ALA contributes to protecting mitochondrial function by preventing ROS accumulation and inhibiting apoptotic cell death. Importantly, post-treatment with ALA consistently showed an almost equal restorative effect to pretreatment, in vitro and in vivo, supporting the possible use of ALA as a therapeutic agent for cisplatin-induced ototoxicity. This study is the first report on a strong therapeutic potential of ALA to rescue ototoxic hearing loss caused by cisplatin, and our data provide key evidence that ALA may act as a reducing agent for glutathione disulfide to increase glutathione levels on behalf of glutathione reductase. This result was consistent in both cultured cells and the mouse model, which improves the clinical value of ALA for therapy of cisplatin-induced ototoxicity.


Molecular Therapy | 2015

349. AAV-Mediated In Utero Gene Therapy To Treat Genetic Hearing Loss

Min-A Kim; Seung-Hyun Bae; Ye-Ri Kim; Byeonghyeon Lee; Se-Kyung Oh; Un-Kyung Kim; Kyu-Yup Lee

Gene therapy for treating genetic hearing loss has made astonishing progress with biotechnical advance, but it still remains the difficulty to treat the disorder ultimately. A diversity of viral vectors are used in gene therapy as vehicle for delivery of therapeutic gene. Moreover, the successful outcome of the gene therapy depends on timing and delivery route as well as titer of virus. Here, we demonstrate that gene therapy by in utero is a promising tool for treating genetic hearing loss. We used adeno-associated virus serotype 1 (AAV1) to express therapeutic gene in mice. To evaluate the safety and efficiency of virus, we transferred an AAV1-GFP into the otocyst at embryonic day 12.5, and the contralateral ear was used as a control. After the gene transfer, a strong expression of transgene was observed without ototoxicity within cochlea and the hearing ability was unaffected by AAV. These results were identified by several histological interpretations and auditory brainstem responses, respectively. We also examined a successful expression of an AAV1-MsrB3-GFP within hair cells in the same way. Together, these results indicate that gene therapy by in utero is potential strategy to treat genetic hearing loss by monogenic mutations. It may apply to treat the deficiency of the MsrB3 gene which results in autosomal recessive non-syndromic hearing loss, DFNB74, in humans.


Cells Tissues Organs | 2013

Front & Back Matter

Reggiani Vilela Gonçalves; Rômulo Dias Novaes; Marli C. Cupertino; Bruna M. Araújo; Emerson Ferreira Vilela; Aline T. Machado; João Paulo Viana Leite; Sérgio Luis Pinto da Matta; Hans-Werner Denker; Kai Bao; Baki Akguel; Nagihan Bostanci; Deirdre E.J. Anderson; Kathryn A. McKenna; Jeremy J. Glynn; Ulla M. Marzec; Stephen R. Hanson; Monica T. Hinds; Un-Kyung Kim; Kyu-Yup Lee; Tae-Jun Kwon; Se-Kyung Oh; Ye-Ri Kim; Min-A Kim; Byeonghyeon Lee; Kwang Shik Choi; Jaetae Lee; Mohammed Abu El-Magd; Ayman A. Saleh; Foad Farrag

Each paper needs an abstract of a maximum of 250 words summarizing the essential new information communicated. Subheadings: Introduction; Materials and Methods; Results; Discussion. List of Abbreviations: Provide a list of the abbreviations used in your paper. Please list them on a separate page of the manuscript. The list will be printed as a footnote at the bottom of the first page of your article. Footnotes: With the exception of the list of abbreviations, footnotes should be avoided. When essential, they are numbered consecutively and typed at the foot of the appropriate page. Nomenclature: The nomenclature used should conform, wherever possible, to the current edition of the Nomina Anatomica (Terminologia Anatomica), Nomina Anatomica Veterinaria, or to the Nomina Anatomica Avium. Tables and illustrations: Tables and illustrations (both numbered in Arabic numerals) should be prepared as separate files. Tables require a heading and figures a legend, prepared on a separate page. Please only use scale bars to indicate magnifications of the illustrations. Due to technical reasons, figures with a screen background should not be submitted. When possible, group several illustrations on one block for reproduction (max. size 180  223 mm) or provide crop marks. Each illustration must be labelled with its number and the author’s name. B/w half-tone and color illustrations must have a final resolution of 300 dpi after scaling (final size), line drawings one of 800–1200 dpi. Figure files must not be embedded in a document file but submitted separately (see detailed instructions at www.karger.com/cto). Color illustrations: During the review process, the decision will be made as to which color illustrations of a manuscript can be reproduced free of charge. Authors will be informed of this at the time of acceptance of their paper. Otherwise, these illustrations will be reproduced at the author’s expense. Up to 6 color illustrations per page can be integrated into the text at the special price of CHF 800.– per page. References: References in the text should be made by author’s name followed by the year of publication, arranged chronologically, then alphabetically. When there are more than two authors, use the first author’s name and et al. When references are made to more than one paper by the same author, published in the same year, designate them as a, b, c, etc. The list of references should include only those publications which are cited in the text. Material submitted for publication but not yet accepted may be cited in the text as ‘unpublished data’ but must not be included in the reference list. In the list of references, arrange references alphabetically listing all authors, then year of publication. Preferably, please cite all authors. Abbreviate journal names according to Index Medicus. Examples (a) Papers published in periodicals: Robinson, C.M., D. O’Dee, T. Hamilton, G.J. Nau (2010) Cytokines involved in interferon-γ production by human macrophages. J Innate Immun 2: 56–65. (b) Papers published only with DOI numbers: Konstantinou, G.N., P.J. Bousquet, T. Zuberbier, N.G. Papadopoulos: The longest wheal diameter is the optimal measurement for the evaluation of skin prick tests. Int Arch Allergy Immunol DOI: 10.1159/000250443. (c) Monographs: Matthews, D.E., V.T. Farewell (2007) Using and Understanding Medical Statistics, ed 4, revised. Basel, Karger. (d) Chapters published in edited books: Li, L., V. Boussiotis (2009) Control and regulation of peripheral tolerance in allergic infl ammatory disease: therapeutic consequences; in Blaser, K. (ed): T Cell Regulation in Allergy, Asthma and Atopic Skin Diseases. Chem Immunol. Basel, Karger, vol 94, pp 178–188. Further details: Authors may consult the ‘Guide to Writing Articles in English’ by R. O’Rahilly (Acta Anat 131: 1–2, 1988). Digital Object Identifier (DOI) S. Karger Publishers supports DOIs as unique identifiers for articles. A DOI number will be printed on the title page of each article. DOIs can be useful in the future for identifying and citing articles published online without volume or issue information. More information can be found at www.doi.org. Supplementary Material Supplementary material is restricted to additional data that are not necessary for the scientific integrity and conclusions of the paper. Please note that all supplementary files will undergo editorial review and should be submitted together with the original manuscript. The Editors reserve the right to limit the scope and length of the supplementary material. Supplementary material must meet production quality standards for


International Journal of Pediatric Otorhinolaryngology | 2017

Protective effects of 1,2,3-triazole derivative KPR-A020 against cisplatin-induced ototoxicity in murine cochlear cultures

Ye-Ri Kim; Da Jung Jung; Se-Kyung Oh; Taeho Lee; In-Kyu Lee; Kyu-Yup Lee; Un-Kyung Kim

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Kyu-Yup Lee

Kyungpook National University

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Un-Kyung Kim

Kyungpook National University

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Min-A Kim

Kyungpook National University

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Byeonghyeon Lee

Kyungpook National University

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Se-Kyung Oh

Kyungpook National University

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Jaetae Lee

Kyungpook National University

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Seung-Hyun Bae

Kyungpook National University

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Borum Sagong

Kyungpook National University

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Da Jung Jung

Kyungpook National University

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