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Dive into the research topics where Yoichiro Arata is active.

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Featured researches published by Yoichiro Arata.


Biochemical and Biophysical Research Communications | 2015

S-nitrosylation of mouse galectin-2 prevents oxidative inactivation by hydrogen peroxide.

Mayumi Tamura; Masanori Saito; Kaori Yamamoto; Tomoharu Takeuchi; Kazuo Ohtake; Hiroaki Tateno; Jun Hirabayashi; Jun Kobayashi; Yoichiro Arata

Galectins are a group of animal lectins characterized by their specificity for β-galactosides. Galectin-2 (Gal-2) is predominantly expressed in the gastrointestinal tract. A proteomic analysis identified Gal-2 as a protein that was S-nitrosylated when mouse gastric mucosal lysates were reacted with S-nitrosoglutathione, a physiologically relevant S-nitrosylating agent. In the present study, recombinant mouse (m)Gal-2 was S-nitrosylated using nitrosocysteine (CysNO), which had no effect on the sugar-binding specificity and dimerization capacity of the protein. On the other hand, mGal-2 oxidation by H2O2 resulted in the loss of sugar-binding ability, while S-nitrosylation prevented H2O2-inducted inactivation, presumably by protecting the Cys residue(s) in the protein. These results suggest that S-nitrosylation by nitric oxides protect Gal-2 from oxidative stress in the gastrointestinal tract.


Biochemical and Biophysical Research Communications | 2013

Mammalian galectins bind Galactoseβ1–4Fucose disaccharide, a unique structural component of protostomial N-type glycoproteins

Tomoharu Takeuchi; Mayumi Tamura; Kazusa Nishiyama; Jun Iwaki; Jun Hirabayashi; Hideyo Takahashi; Hideaki Natsugari; Yoichiro Arata; Ken-ichi Kasai

Galactoseβ1-4Fucose (Galβ1-4Fuc) is a unique disaccharide exclusively found in N-glycans of protostomia, and is recognized by some galectins of Caenorhabditis elegans and Coprinopsis cinerea. In the present study, we investigated whether mammalian galectins also bind such a disaccharide. We examined sugar-binding ability of human galectin-1 (hGal-1) and found that hGal-1 preferentially binds Galβ1-4Fuc compared to Galβ1-4GlcNAc, which is its endogenous recognition unit. We also tested other human and mouse galectins, i.e., hGal-3, and -9 and mGal-1, 2, 3, 4, 8, and 9. All of them also showed substantial affinity to Galβ1-4Fuc disaccharide. Further, we assessed the inhibitory effect of Galβ1-4Fuc, Galβ1-4Glc, and Gal on the interaction between hGal-1 and its model ligand glycan, and found that Galβ1-4Fuc is the most effective. Although the biological significance of galectin-Galβ1-4Fuc interaction is obscure, it might be possible that Galβ1-4Fuc disaccharide is recognized as a non-self-glycan antigen. Furthermore, Galβ1-4Fuc could be a promising seed compound for the synthesis of novel galectin inhibitors.


Carbohydrate Research | 2011

Caenorhabditis elegans proteins captured by immobilized Galβ1-4Fuc disaccharide units: assignment of 3 annexins

Tomoharu Takeuchi; Kazusa Nishiyama; Atsushi Yamada; Mayumi Tamura; Hideyo Takahashi; Hideaki Natsugari; Jun-ichi Aikawa; Kyoko Kojima-Aikawa; Yoichiro Arata; Ken-ichi Kasai

Galβ1-4Fuc is a key structural motif in Caenorhabditis elegans glycans and is responsible for interaction with C. elegans galectins. In animals of the clade Protostomia, this unit seems to have important roles in glycan-protein interactions and corresponds to the Galβ1-4GlcNAc unit in vertebrates. Therefore, we prepared an affinity adsorbent having immobilized Galβ1-4Fuc in order to capture carbohydrate-binding proteins of C. elegans, which interact with this disaccharide unit. Adsorbed C. elegans proteins were eluted with ethylenediaminetetraacetic acid (EDTA) and followed by lactose (Galβ1-4Glc), digested with trypsin, and were then subjected to proteomic analysis using LC-MS/MS. Three annexins, namely NEX-1, -2, and -3, were assigned in the EDTA-eluted fraction. Whereas, galectins, namely LEC-1, -2, -4, -6, -9, -10, and DC2.3a, were assigned in the lactose-eluted fraction. The affinity of annexins for Galβ1-4Fuc was further confirmed by adsorption of recombinant NEX-1, -2, and -3 proteins to the Galβ1-4Fuc column in the presence of Ca(2+). Furthermore, frontal affinity chromatography analysis using an immobilized NEX-1 column showed that NEX-1 has an affinity for Galβ1-4Fuc, but no affinity toward Galβ1-3Fuc and Galβ1-4GlcNAc. We would hypothesize that the recognition of the Galβ1-4Fuc disaccharide unit is involved in some biological processes in C. elegans and other species of the Protostomia clade.


Bioorganic & Medicinal Chemistry Letters | 2014

Halenaquinone inhibits RANKL-induced osteoclastogenesis

Sachiko Tsukamoto; Tomoharu Takeuchi; Tetsuro Kawabata; Hikaru Kato; Michiko Yamakuma; Kanae Matsuo; Ahmed H. El-Desoky; Fitje Losung; Remy E. P. Mangindaan; Nicole J. de Voogd; Yoichiro Arata; Hideyoshi Yokosawa

Halenaquinone was isolated from the marine sponge Petrosia alfiani as an inhibitor of osteoclastogenic differentiation of murine RAW264 cells. It inhibited the RANKL (receptor activator of nuclear factor-κB ligand)-induced upregulation of TRAP (tartrate-resistant acid phosphatase) activity as well as the formation of multinuclear osteoclasts. In addition, halenaquinone substantially suppressed RANKL-induced IκB degradation and Akt phosphorylation. Thus, these results suggest that halenaquinone inhibits RANKL-induced osteoclastogenesis at least by suppressing the NF-κB and Akt signaling pathways.


Glycobiology | 2013

Structural basis of preferential binding of fucose-containing saccharide by the Caenorhabditis elegans galectin LEC-6

Hisayoshi Makyio; Tomoharu Takeuchi; Mayumi Tamura; Kazusa Nishiyama; Hideyo Takahashi; Hideaki Natsugari; Yoichiro Arata; Ken-ichi Kasai; Yusuke Yamada; Soichi Wakatsuki; Ryuichi Kato

Galectins are a group of lectins that can bind carbohydrate chains containing β-galactoside units. LEC-6, a member of galectins of Caenorhabditis elegans, binds fucose-containing saccharides. We solved the crystal structure of LEC-6 in complex with galactose-β1,4-fucose (Galβ1-4Fuc) at 1.5 Å resolution. The overall structure of the protein and the identities of the amino-acid residues binding to the disaccharide are similar to those of other galectins. However, further structural analysis and multiple sequence alignment between LEC-6 and other galectins indicate that a glutamic acid residue (Glu67) is important for the preferential binding between LEC-6 and the fucose moiety of the Galβ1-4Fuc unit. Frontal affinity chromatography analysis indicated that the affinities of E67D and E67A mutants for Galβ1-4Fuc are lower than that of wild-type LEC-6. Furthermore, the affinities of Glu67 mutants for an endogenous oligosaccharide, which contains a Galβ1-4Fuc unit, are drastically reduced relative to that of the wild-type protein. We conclude that the Glu67 in the oligosaccharide-binding site assists the recognition of the fucose moiety by LEC-6.


Biochemical and Biophysical Research Communications | 2009

Crosslinking of N-acetyllactosamine-containing glycoproteins to galectin-1 with an introduced cysteine using a photoactivatable sulfhydryl reagent

Mayumi Tamura; Takanori Igarashi; Ken-ichi Kasai; Yoichiro Arata

Relatively weak interactions between galectins and their potential ligands can hinder identification of physiological lectin ligands using conventional methods such as affinity purification. We have employed a combination of cysteine mutagenesis with chemical crosslinking using a photoactivatable sulfhydryl reagent benzophenone-4-maleimide to obtain a covalent complex between human galectin-1 and the model glycoprotein ligands asialofetuin and laminin which contain an N-acetyllactosamine structure. A crosslinked product was obtained only when galectin-1 with an introduced cysteine interacted with these glycoproteins via their carbohydrate moiety. This procedure should be useful for the detection of important, and as yet unidentified, ligands for galectins which cannot be currently detected because of their relatively weak interaction.


Biological & Pharmaceutical Bulletin | 2015

ISG15 Regulates RANKL-Induced Osteoclastogenic Differentiation of RAW264 Cells

Tomoharu Takeuchi; Genki Shimakawa; Mayumi Tamura; Hideyoshi Yokosawa; Yoichiro Arata

Interferon-stimulated gene 15 kDa (ISG15) is a protein upregulated by interferon-β that negatively regulates osteoclastogenesis. We investigated the role of ISG15 in receptor activator of nuclear factor-κB ligand (RANKL)-induced osteoclastogenic differentiation of murine RAW264 cells. RANKL stimulation induced ISG15 expression in RAW264 cells at both the mRNA and protein levels. Overexpression of ISG15 in RAW264 cells resulted in suppression of cell fusion in RANKL-stimulated cells as well as the reduced expression of ATP6v0d2, a gene essential for cell fusion in osteoclastogenic differentiation. These results suggest that ISG15 suppresses RANKL-induced osteoclastogenesis, at least in part, through inhibition of ATP6v0d2 expression.


Biological & Pharmaceutical Bulletin | 2017

Identification of Galectin-2–Mucin Interaction and Possible Formation of a High Molecular Weight Lattice

Mayumi Tamura; Dai Sato; Moeko Nakajima; Masanori Saito; Takaharu Sasaki; Toru Tanaka; Tomomi Hatanaka; Tomoharu Takeuchi; Yoichiro Arata

Galectins comprise a group of animal lectins characterized by their specificity for β-galactosides. Galectin-2 (Gal-2) is predominantly expressed in the gastrointestinal tract and has been identified as one of the main gastric mucosal proteins that are proposed to have a protective role in the stomach. As Gal-2 is known to form homodimers in solution, this may result in crosslinking of macromolecules with the sugar structures recognized by Gal-2. In this study, we report that Gal-2 could interact with mucin, an important component of gastric mucosa, in a β-galactoside-dependent manner. Furthermore, Gal-2 and mucin could form an insoluble precipitate, potentially through the crosslinking of mucins via Gal-2 and the formation of a lattice, resulting in a large insoluble complex. Therefore, we suggest that Gal-2 plays a role in the gastric mucosa by strengthening the barrier structure through crosslinking the mucins on the mucosal surface.


Proteomics | 2016

A unique galactoseβ1-4fucose disaccharide unit found on the N-glycans of invertebrates, including nematodes.

Tomoharu Takeuchi; Yoichiro Arata; Ken-ichi Kasai

Galactoseβ1‐4fucose (Galβ1‐4Fuc), a unique disaccharide unit found only on the N‐glycans of Protostomia, has been intensively studied, particularly in Nematoda. Galβ1‐4Fuc attached to the 6‐OH of the innermost GlcNAc of N‐glycans has been identified as an endogenous target recognized by Caenorhabditis elegans galectin LEC‐6 and might function as an endogenous ligand for other galectins as well. Interactions between galectins and N‐glycans might be subject to fine‐tuning through modifications of the penultimate GlcNAc and the Galβ1‐4Fuc unit. Similar fine‐tuning is also observable in vertebrate galectins, although their major recognition unit is a Galβ1‐4GlcNAc. In Protostomia, it can be postulated that glycan‐binding proteins and their ligands have coevolved; however, epitopes such as Galβ1‐4Fuc were then hijacked as targets by other organisms. Fungal (Coprinopsis cinerea) galectin 2, CGL2, binds the Galβ1‐4Fuc on C. elegans glycans to exert its nematotoxicity. Some human and mouse galectins bind to synthesized Galβ1‐4Fuc; as some parasitic nematodes express this motif, its recognition by mammalian galectins could hypothetically be involved in host defense, similar to fungal CGL2. In this review, we discuss the Galβ1‐4Fuc unit in Protostomia as a possible equivalent for the Galβ1‐4GlcNAc unit in vertebrates and a potential non‐self glycomarker useful for pathogen recognition.


Bone reports | 2016

N-acetylglucosamine suppresses osteoclastogenesis in part through the promotion of O-GlcNAcylation

Tomoharu Takeuchi; Moyuko Nagasaka; Miyuki Shimizu; Mayumi Tamura; Yoichiro Arata

Osteoclasts are the only cells in an organism capable of resorbing bone. These cells differentiate from monocyte/macrophage lineage cells upon stimulation by receptor activator of NF-κB ligand (RANKL). On the other hand, osteoclastogenesis is reportedly suppressed by glucose via the downregulation of NF-κB activity through suppression of reactive oxygen species generation. To examine whether other sugars might also affect osteoclast development, we compared the effects of monomeric sugars (glucose, galactose, N-acetylglucosamine (GlcNAc), and N-acetylgalactosamine (GalNAc)) on the osteoclastogenesis of murine RAW264 cells. Our results demonstrated that, in addition to glucose, both GlcNAc and GalNAc, which each have little effect on the generation of reactive oxygen species, suppress osteoclastogenesis. We hypothesized that GlcNAc might affect osteoclastogenesis through the upregulation of O-GlcNAcylation and showed that GlcNAc increases global O-GlcNAcylation, thereby suppressing the RANKL-dependent phosphorylation of NF-κB p65. Furthermore, an inhibitor of N-acetyl-β-D-glucosaminidase, O-(2-acetamido-2-deoxy-D-glucopyranosylidene) amino N-phenylcarbamate (PUGNAc), which also increases O-GlcNAcylation, suppressed the osteoclastogenesis of RAW264 cells and that of human peripheral blood mononuclear cells. Together, these data suggest that GlcNAc suppresses osteoclast differentiation in part through the promotion of O-GlcNAcylation.

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Jun Hirabayashi

National Institute of Advanced Industrial Science and Technology

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