Yolanda H. Chen

Crop Domestication and Its Impact on Naturally Selected Trophic Interactions

Crop domestication is the process of artificially selecting plants to increase their suitability to human requirements: taste, yield, storage, and cultivation practices. There is increasing evidence that crop domestication can profoundly alter interactions among plants, herbivores, and their natural enemies. Overall, little is known about how these interactions are affected by domestication in the geographical ranges where these crops originate, where they are sympatric with the ancestral plant and share the associated arthropod community. In general, domestication consistently has reduced chemical resistance against herbivorous insects, improving herbivore and natural enemy performance on crop plants. More studies are needed to understand how changes in morphology and resistance-related traits arising from domestication may interact with environmental variation to affect species interactions across multiple scales in agroecosystems and natural ecosystems.

Crop domestication disrupts a native tritrophic interaction associated with the sunflower, Helianthus annuus (Asterales: Asteraceae)

Abstract.  1. Crop domestication has been a largely overlooked factor that may explain why insect herbivores tend to be more abundant and less attacked in agricultural habitats than in native habitats. This study explores how domestication of the sunflower, Helianthus annuus L., affects the sunflower moth, Homoeosoma electellum (Lepidoptera: Pyralidae), and its parasitoids.

Abundance of a Native Moth Homoeosoma electellum (Lepidoptera: Pyralidae) and Activity of Indigenous Parasitoids in Native and Agricultural Sunflower Habitats

Abstract Insect herbivores have been assumed to be more abundant in agricultural habitats than in native habitats; however, this hypothesis is rarely tested explicitly by comparing field populations of domesticated plants and their wild ancestors. This study examined the abundance of the sunflower moth, Homoeosoma electellum (Hulst), and its parasitism by natural enemies in agricultural and native sunflower habitats. Nutrient levels and plant population factors in the two habitat types were measured to identify factors associated with the patterns of herbivory and parasitism. Adult male and larval H. electellum were consistently more abundant in agricultural habitats. In contrast, parasitism of H. electellum was 6–10 times higher in native sunflower habitats than in agricultural habitats. Also, fewer parasitoid species were found in agricultural habitats, and parasitism by individual parasitoid species was reduced by 90%. Larval densities per flower head were higher on agricultural plants, but parasitoids failed to respond to the higher densities. The relationship between flower age and larval infestation differed between agricultural and wild flowers; larval age tracked agricultural flower age, but on wild flowers, larvae moved from older to younger flowers. Among the three nutrients sampled, only nitrogen was positively correlated with habitat differences. These results indicate that patterns of trophic interactions varied by habitat type and were related to plant phenotypic changes and environmental habitat factors such as crop domestication, nitrogen fertilization, and plant phenology.

Induced resistance in rice against insects

Vaccinations are the mainstay of western preventive medicine, and they have been used to protect some crops against disease and insect pests. We consider rice as a model for protection using induced resistance since it is one of the most important staple crops and there have been significant new developments in: cross-resistance among rice insects, chemical pathways involved in induced resistance, sequencing the rice genome and expression of genes conferring resistance against rice insect pests. Insect attack has been found to cause lesions that kill planthopper eggs and early stages of gall midges. Damaged plants released volatiles that made them less likely to be chosen by planthoppers and more attractive to parasitoids. Chemical elicitors have been developed for dicotyledonous plants and these can induce resistance in rice, although rice does not fit models developed to explain signalling in dicots. For example, salicylic acid did not increase in rice after infection by pathogens and did not appear to be the mobile signal for induced resistance against pathogens although it was involved in induced responses to phloem-feeding insects. Jasmonic acid acted as a signal in some induced responses to pathogens as well as chewing insects. Many of the genes associated with induced resistance in rice have recently been mapped, and techniques are being developed to incorporate them into the genome of cultivated varieties. Attempts to control insect pests of rice will affect interactions with pathogens, predators and parasites, and other organisms in this agroecosystem.

Pre-invasion history and demography shape the genetic variation in the insecticide resistance-related acetylcholinesterase 2 gene in the invasive Colorado potato beetle

BackgroundInvasive pest species offers a unique opportunity to study the effects of genetic architecture, demography and selection on patterns of genetic variability. Invasive Colorado potato beetle (Leptinotarsa decemlineata) populations have experienced a rapid range expansion and intense selection by insecticides. By comparing native and invasive beetle populations, we studied the origins of organophosphate (OP) resistance-associated mutations in the acetylcholinesterase 2 (AChE2) gene, and the role of selection and demography on its genetic variability.ResultsAnalysis of three Mexican, two US and five European populations yielded a total of 49 haplotypes. Contrary to the expectations all genetic variability was associated with a point mutation linked to insecticide resistance (S291G), this mutation was found in 100% of Mexican, 95% of US and 71% of European beetle sequences analysed. Only two susceptible haplotypes, genetically very differentiated, were found, one in US and one in Europe. The genetic variability at the AChE2 gene was compared with two other genes not directly affected by insecticide selection, diapause protein 1 and juvenile hormone esterase. All three genes showed reduction in genetic variability indicative of a population bottleneck associated with the invasion.ConclusionsStochastic effects during invasion explain most of the observed patterns of genetic variability at the three genes investigated. The high frequency of the S291G mutation in the AChE2 gene among native populations suggests this mutation is the ancestral state and thus, either a pre-adaptation of the beetle for OP resistance or the AChE2 is not the major gene conferring OP resistance. The long historical association with host plant alkaloids together with recombination may have contributed to the high genetic variation at this locus. The genetic diversity in the AChE2 locus of the European beetles, in turn, strongly reflects founder effects followed by rapid invasion. Our results suggest that despite the long history of insecticide use in this species, demographic events together with pre-invasion history have been strongly influential in shaping the genetic diversity of the AChE2 gene in the invasive beetle populations.

Complex tritrophic interactions in response to crop domestication: predictions from the wild

Crop domestication is the process of artificially selecting plants to increase their suitability to human tastes and cultivated growing conditions. There is increasing evidence that crop domestication can profoundly alter interactions among plants, herbivores, and their natural enemies. However, there are few generalizable predictions on how insect herbivores and natural enemies should respond to artificial selection of specific plant traits. We reviewed the literature to determine how different insect herbivore feeding guilds and natural enemy groups (parasitoids and predators) respond to existing variation in wild and cultivated plant populations for plant traits typically targeted by domestication. Our goal was to look for broad patterns in tritrophic interactions to generate support for a range of potential outcomes from human‐mediated selection. Overall, we found that herbivores benefit from directional selection on traits that have been targeted by domestication, but the effects on natural enemies were less studied and less consistent. In general, herbivores appear to mirror human preferences for higher nutritional content and larger plant structures. In contrast, the general effect of lowered plant secondary metabolites did not always influence herbivores consistently. Given that crop domestication appears to be a transformative process that fundamentally alters insect–plant interactions, we believe that a more detailed understanding of the community‐wide effects of crop domestication is needed to simultaneously stimulate both biological control and plant breeding efforts to enhance sustainable pest control.

Proteome Analysis of Rice (Oryza sativa L.) Mutants Reveals Differentially Induced Proteins during Brown Planthopper (Nilaparvata lugens) Infestation.

Although rice resistance plays an important role in controlling the brown planthopper (BPH), Nilaparvata lugens, not all varieties have the same level of protection against BPH infestation. Understanding the molecular interactions in rice defense response is an important tool to help to reveal unexplained processes that underlie rice resistance to BPH. A proteomics approach was used to explore how wild type IR64 and near-isogenic rice mutants with gain and loss of resistance to BPH respond during infestation. A total of 65 proteins were found markedly altered in wild type IR64 during BPH infestation. Fifty-two proteins associated with 11 functional categories were identified using mass spectrometry. Protein abundance was less altered at 2 and 14 days after infestation (DAI) (T1, T2, respectively), whereas higher protein levels were observed at 28 DAI (T3). This trend diminished at 34 DAI (T4). Comparative analysis of IR64 with mutants showed 22 proteins that may be potentially associated with rice resistance to the brown planthopper (BPH). Ten proteins were altered in susceptible mutant (D1131) whereas abundance of 12 proteins including S-like RNase, Glyoxalase I, EFTu1 and Salt stress root protein “RS1” was differentially changed in resistant mutant (D518). S-like RNase was found in greater quantities in D518 after BPH infestation but remained unchanged in IR64 and decreased in D1131. Taken together, this study shows a noticeable level of protein abundance in the resistant mutant D518 compared to the susceptible mutant D1131 that may be involved in rendering enhanced level of resistance against BPH.

Arthropod diversity and community composition on wild and cultivated rice

1 Most crop plants are grown far from their region of origin and have been significantly altered by human selection. Given the importance of biodiversity in ecosystem function, surprisingly little is known about the effect of domestication on arthropod diversity and community composition. 2 Arthropod diversity and species abundance were compared with three genotypes of cultivated rice Oryza sativa L. and two genotypes of wild rice O. rufipogon Griff. in southern Luzon, the Philippines. 3 Domestication had a small but positive effect on total arthropod diversity. Arthropod species richness was highest on the cultivar IR64 and lowest on one of the O. rufipogon genotypes, although arthropod community composition was similar across rice genotypes. 4 Total arthropod abundance and the relative abundance of guilds did not differ between wild and cultivated rice. All common herbivores, however, responded to rice domestication. Stem‐boring moths and several sap‐sucking herbivores benefited from domestication, although domestication reduced densities of the wolf spider Pardosa pseudoannulata Boesenberg et Strand. 5 By contrast to previous assumptions, crop domestication may not always decrease arthropod diversity. We did not detect any changes in biodiversity or community composition suggesting that rice domestication has altered the capacity of the arthropod community to regulate herbivores.

Inferring population history from fine-scale spatial genetic analysis in Oryza rufipogon (Poaceae).

Determining the genetic structure of an in situ conserved population can provide insight into the dynamics of population genetic processes associated with successful plant conservation. We used 21 microsatellite loci to analyse the genetic relationships among individuals (n= 813) collected from a small Oryza rufipogon population conserved since 1993 in Hunan Province of China. The analysis revealed four distinct genetic subpopulations (FST= 0.145) without geographic isolation. One subpopulation was composed of possible introgressed individuals, two subpopulations were composed of seed recruits and their descendants, and the fourth subpopulation consisted of reintroduced individuals, seed recruits and their descendants. Positive spatial genetic structures were detected by spatial autocorrelation statistics at the population (c. 63 m) and subpopulation levels (11–30 m), but the degree of autocorrelation was stronger at the population level. These results showed that prejudging the cryptic structure is important before autocorrelation analysis for the entire population. Our study suggests that population history can be a significant determinant on population structure for plant restoration projects.

Cultivation of Domesticated Rice Alters Arthropod Biodiversity and Community Composition

ABSTBACT Although it is well established that biodiversity plays an important role in pest control, there is limited knowledge on how the origins of agriculture may shape arthropod biodiversity. Arthropod food webs likely have coevolved with wild crop relatives before domestication, but not all arthropod taxa may be able to inhabit cultivated habitats. We sampled wild and cultivated rice fields in the Mekong Delta of Vietnam to determine how season (dry versus wet) and rice cultivation influenced arthropod diversity and community composition. We found that cultivated rice fields supported ≈50% fewer taxa than wild rice fields, and that there were widespread losses in taxonomic richness within all of the major orders. Wild rice fields supported 173 unique taxa that were not found in any cultivated rice fields, whereas cultivated rice (Oryza sativa L.) supported only 23 unique taxa. Furthermore, wild and cultivated rice supported different arthropod communities. Predators and parasitoids were the most abundant in wild rice during the dry season. Herbivore densities were similar in wild and cultivated rice, but were reduced in wild rice (Oryza rugipogon L.) during the wet season. Neither season nor habitat influenced the densities of detritivores, but aquatic predators were more abundant during the dry season. This study provides empirical evidence that large-scale losses of species richness and changes in arthropod community structure are associated with the cultivation of domesticated rice.