Yoshihisa Shirayama

Seasonal phytodetritus deposition and responses of bathyal benthic foraminiferal populations in Sagami Bay, Japan: preliminary results from “Project Sagami 1996–1999”

The seasonal carbon cycle was studied in the bathyal environment of Sagami Bay, Japan, to determine whether “benthic–pelagic coupling” takes place in this eutrophic marginal oceanic setting. Both Japanese sea color observation satellite (ADEOS) photography and sediment trap moorings have been used since 1996 for monitoring sea surface primary production. Video records at a real time deep-sea floor observatory off Hatsushima Island in Sagami Bay were also used to monitor the deposition of phytodetritus on the sea floor. At this location, a spring bloom starts in mid-February and ends in mid-April. About 2 weeks after the start of the spring bloom, phytodetrital material is deposited on the sea floor. Video records clearly show that phytodetritus deposition has taken place in the spring of every year since 1994, even though the exact timing is different from year to year. The population size of benthic foraminifera is highly correlated to this phytodetritus deposition. The phytodetritus triggers rapid, opportunistic reproduction of the shallow infaunal taxa, Bolivina pacifica, Stainforthia apertura and Textularia kattegatensis. Shallow infaunal species mainly occur in the phytodetrital layer or just below this layer during the spring. This indicates that such opportunistic species are key indicators of phytodetrital deposition. The deep infaunal taxa Globobulimina affinis and Chilostomella ovoidea show less pronounced seasonal fluctuations in population size, but nevertheless exhibit some response to phytodetrital deposition. Thus the seasonal flux of organic matter is the most important determinant of population size, microhabitats and reproduction of benthic foraminifera in Sagami Bay.

The olfactory receptor gene repertoires in secondary-adapted marine vertebrates: evidence for reduction of the functional proportions in cetaceans.

An olfactory receptor (OR) multigene family is responsible for the well-developed sense of smell possessed by terrestrial tetrapods. Mammalian OR genes had diverged greatly in the terrestrial environment after the fish–tetrapod split, indicating their importance to land habitation. In this study, we analysed OR genes of marine tetrapods (minke whale Balaenoptera acutorostrata, dwarf sperm whale Kogia sima, Dalls porpoise Phocoenoides dalli, Stellers sea lion Eumetopias jubatus and loggerhead sea turtle Caretta caretta) and revealed that the pseudogene proportions of OR gene repertoires in whales were significantly higher than those in their terrestrial relative cattle and also in sea lion and sea turtle. On the other hand, the pseudogene proportion of OR sequences in sea lion was not significantly higher compared with that in their terrestrial relative (dog). It indicates that secondary perfectly adapted marine vertebrates (cetaceans) have lost large amount of their OR genes, whereas secondary-semi-adapted marine vertebrates (sea lions and sea turtles) still have maintained their OR genes, reflecting the importance of terrestrial environment for these animals.

Meiofauna in a cold-seep community off Hatsushima, central Japan

The community structure of the bathyal meiofauna of a cold-seep community found off Hatsushima in Sagami Bay, central Japan, was compared with the community composition outside the influence of the seep, using sediments collected during dives 226 and 227 of the deep-sea submersibleShinkai 2000. The sediment from the Hatsushima seep site (HSS) was very coarse, black in color, and with an odor of hydrogen sulfide, suggesting reduced thiobiotic conditions. The sediment from the control area was well-oxygenated, fine silt. Despite the differences in the characteristics of the sediments, the abundance of meiofauna in the HSS was not very different from that in the control area. However, its composition even at the major taxonomic group level was distinct; for example, a high nematode/copepod ratio occurred in one of the samples collected at the HSS. At the species level, nematodes were less diverse at the HSS than at the control area. The composition of the nematode fauna at the HSS showed stronger affinity with that collected at the adjacent control area than with a community sampled from other deep-sea environments or another seep community in shallow water. This emphasizes that the adaptation of nematodes to the thiobiotic condition is controlled by local conditions.

Comparisons of deep-sea sediments and overlying water collected using Multiple Corer and Box Corer

Sediments and overlying water collected using Multiple Corer (MC) and Box Corer (BC) at three stations in Suruga Bay were compared from the view points of meiobenthic and chemical characteristics. Dissolved oxygen, pH, ammonium and nitrite concentrations of the overlying waters were lower, whereas nitrate and phosphate concentrations were higher constantly in the samples collected by MC than those by BC, suggesting contamination of surface seawater in the BC samples. Sediments were sliced into 0–1, 1–2 and 2–3 cm layers, and water content and Eh, and abundance of meiofauna were analyzed. Water content in MC samples was always higher than BC ones. For the whole meiobenthos, MC collected significantly more individuals than BC at only one out of three stations, whereas for harpacticoid copepods, which aggregated to the surface layer of the sediment, MC constantly collected significantly more individuals than BC. In the vertical profiles of both water content and meiofaunal density, data of 0–1, and 1–2 cm layers in the BC samples were similar to those of 1–2 and 2–3 cm layers in the MC samples, respectively. These results suggested only MC can collect the real sediment surface (so called fluffy layer), which was lost due to bow wave effects in the BC samples.

Dynamic Insertion–Deletion of Introns in Deuterostome EF-1α Genes

Abstract. To test the validity of intron–exon structure as a phylogenetic marker, the intron–exon structure of EF-1α genes was investigated for starfish, acornworms, ascidians, larvaceans, and amphioxus and compared with that of vertebrates. Of the 11 distinct intron insertion sites found within the coding regions of the deuterostome EF-1α genes, 7 are shared by several taxa, while the remainder are unique to certain taxa. Examination of the shared introns of the deuterostome EF-1α gene revealed that independent intron loss or intron insertion must have occurred in separate lineages of the deuterostome taxa. Maximum parsimony analysis of the intron–exon data matrix recovered five parsimonious trees (consistency index = 0.867). From this result, we concluded that the intron–exon structure of deuterostome EF-1α has evolved more dynamically than previously thought, rendering it unsuitable as a phylogenetic marker. We also reconstructed an evolutionary history of intron insertion–deletion events on the deuterostome phylogeny, based on several molecular phylogenetic studies. These analyses revealed that the deuterostome EF-1α gene has lost individual introns more frequently than all introns simultaneously.

Abundance of deep-sea meiobenthos off Sanriku, northeastern Japan

Abundance of deep-sea meiobenthos off Sanriku, Northeastern Japan was studied quantitatively using sediment samples collected by box corers or an Okean grab. Sampling stations were established along a line transect which covered areas from off the mouth of Otsuchi Bay to the abyssal plain of the western Pacific crossing over the Japan Trench (water depths from 120 m to 7460 m). Abundance of meiobenthos decreased linearly with water depth down to 1503 m and became constant at stations deeper than 4130 m. Nematodes predominated over the other taxonomic groups at all stations. An equation to estimate meiofaunal abundance from several sediment characteristics, which was previously proposed by the first author based on data from tropical and subtropical regions of the western Pacific, was applied to the present boreal area. At one station where the Okean grab was used, the estimated value was 4.7 times more than the observed one. Except for the station, however, observed values fell within the confident range of estimated values. The estimated values were always higher than the observed ones at boxcorer stations, whereasvice versa at Okean-grab stations. These results suggested that keen attention is necessary in selecting sampling gear for ecological studies of deep-sea meiobenthos.

Response of benthic organisms to seasonal change of organic matter deposition in the bathyal Sagami Bay, central Japan

Abstract An interdisciplinary research project was carried out to understand seasonal carbon cycling in a deep-sea ecosystem in Sagami Bay, central Japan. Temporal changes in the chloroplastic pigment (CPE) concentration in the sediment, as well as the abundance, the biomass and the metabolic activity of benthic organisms were studied. CPE was detectable throughout the year, and its amount increased in the spring when a fluffy layer was observed on the surface of the sediment. Significant seasonal fluctuation of bacterial abundance was found, but the range was small, the maximal value being only 1.6 times larger than the minimal one. Metabolic activity did not show significant temporal difference. The abundance and biomass of metazoan meiofauna seemed to fluctuate seasonally, but ANOVA did not confirm it statistically. Our results suggest that if enough organic matter is supplied constantly, the deep-sea benthic community will be stable even though seasonality of organic matter flux associated with the spring bloom exists.

Long-term monitoring of the sedimentary processes in the central part of Sagami Bay, Japan: Rationale, logistics and overview of results

Abstract Deep-sea benthic ecosystems are mainly sustained by sinking organic materials that are produced in the euphotic zone. “Benthic–pelagic coupling” is the key to understanding both material cycles and benthic ecology in deep-sea environments, in particular in topographically flat open oceanic settings. However, it remains unclear whether “benthic–pelagic coupling” exists in eutrophic deep-sea environments at the ocean margins where areas of undulating and steep bottom topography are partly closely surrounded by land. Land-locked deep-sea settings may be characterized by different particle behaviors both in the water column and in relation to submarine topography. Mechanisms of particle accumulation may be different from those found in open ocean sedimentary systems. An interdisciplinary programme, “Project Sagami”, was carried out to understand seasonal carbon cycling in a eutrophic deep-sea environment (Sagami Bay) with steep bottom topography along the western margin of the Pacific, off central Japan. We collected data from ocean color photographs obtained using a sea observation satellite, surface water samples, hydrographic casts with turbidity sensor, sediment trap moorings and multiple core samplings at a permanent station in the central part of Sagami Bay between 1997 and 1998. Bottom nepheloid layers were also observed in video images recorded at a real-time, sea-floor observatory off Hatsushima in Sagami Bay. Distinct spring blooms were observed during mid-February through May in 1997. Mass flux deposited in sediment traps did not show a distinct spring bloom signal because of the influence of resuspended materials. However, dense clouds of suspended particles were observed only in the spring in the benthic nepheloid layer. This phenomenon corresponds well to the increased deposition of phytodetritus after the spring bloom. A phytodetrital layer started to form on the sediment surface about two weeks after the start of the spring bloom. Chlorophyll-a was detected in the top 2 cm of the sediment only when a phytodetritus layer was present. Protozoan and metazoan meiobenthos increased in density after phytodetritus deposition. Thus, “benthic–pelagic coupling” was certainly observed even in a marginal ocean environment with undulated bottom topography. Seasonal changes in features of the sediment–water interface were also documented.

Biodiversity and biological impact of ocean disposal of carbon dioxide

Five major characteristics of deep-sea organisms that are relevant to the carbon dioxide ocean sequestration are pointed out. They are (1) Low biological activities, (2) Long life span, (3) High sensitivity to the environmental disturbance, (4) High species diversity, an (5) Low density. These characteristics suggest the deep-sea species are sensitive to the environmental disturbance, and once they are damaged, they may extinct easily or it takes a long time to recover. To get public acceptance for ocean sequestration of carbon dioxide, we need a reliable assessment of its affects on the deep-sea ecosystem based on an accurate model. For a better modeling, data regarding the long-term (chronic) effect of slightly increased concentration of carbon dioxide on the deep-sea organisms are prerequisite. Precise data regarding such biological characteristics can be obtained only from in-situ experiments. To develop a system for ecophysiological in-situ experiments of deep-sea organisms is thus as important as solving the technological problems related to the ocean sequestration of carbon dioxide.

Particle dynamics in the deep water column of Sagami Bay, Japan. I: origins of apparent flux of sinking particles

Abstract Temporal variations of sinking particle flux, together with their organic chemical properties, were monitored in the deep basin of Sagami Bay, Japan, using sediment traps with very high time resolutions from March 1997 to August 1998. At a height of 350 m above the bottom (about 1200 m water depth), the averaged total mass flux was more than 1000 mg/m2/day, which is about 10 times higher than those obtained for open ocean regions near Sagami Bay. While large amounts of phytodetritus, derived from phytoplankton blooms in the surface water, were transported downward in spring, the following extraordinary patterns in the temporal variability of sinking particle flux were also observed: (1) A sustained large flux of sinking particles during low productive periods from summer to winter in 1997. (2) An episodic increase of sinking particle flux in June 1998. (3) A difference in the temporal variability of sinking particles between the spring bloom periods of 1997 and 1998. The content of total organic carbon (TOC) and the stable carbon isotopic ratio (δ13C) of TOC demonstrated that the large fluxes observed in (1) and (2) could be attributed to the resuspension of phytodetritus deposited on the sea floor during the spring bloom period, and the abrupt erosion of surface sediment on the continental slope, respectively. The concentration of suspended particles in the deep water column affect the apparent flux of sinking particles. At the same time, sinking particles exported from surface waters during the spring bloom both decrease and increase suspended particle concentration through scavenging and rebound processes, respectively. Finally, the apparent difference in sinking particle flux between 1997 and 1998, (3), could be explained by differences in the extent of the scavenging process, which depend on the flux and quality of exported particles from the surface waters.