Yosuke Matsuda

Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale

· Much of the macroecological information about microorganisms is confounded by the lack of standardized methodology, paucity of metadata and sampling effect of a particular substrate or interacting host taxa. · This study aims to disentangle the relative effects of biological, geographical and edaphic variables on the distribution of Alnus-associated ectomycorrhizal (ECM) fungi at the global scale by using comparable sampling and analysis methods. · Ribosomal DNA sequence analysis revealed 146 taxa of ECM fungi from 22 Alnus species across 96 sites worldwide. Use of spatial and phylogenetic eigenvectors along with environmental variables in model selection indicated that phylogenetic relations among host plants and geographical links explained 43 and 10%, respectively,in ECM fungal community composition, whereas soil calcium concentration positively influenced taxonomic richness. · Intrageneric phylogenetic relations among host plants and regional processes largely account for the global biogeographic distribution of Alnus-associated ECM fungi. The biogeography of ECM fungi is consistent with ancient host migration patterns from Eurasia to North America and from southern Europe to northern Europe after the last glacial maximum, indicating codispersal of hosts and their mycobionts.

Characterization and Identification of Strobilomyces confusus Ectomycorrhizas on Momi Fir by RFLP Analysis of the PCR-Amplified ITS Region of the rDNA

We identified ectomycorrhizal (ECM) roots formed byStrobilomyces confusus associated withAbies firma based on molecular analyses combined with ECM descriptions and examined the correspondence between above-groundS. confusus fruiting bodies and ECM roots below ground. Both mature fruiting bodies ofS. confusus and soil samples (1,000 cm3 in volume) from directly below the fruiting body were collected from three different spots in a 10 × 30-m plot in central Japan, in whichA. firma was the dominant species. Total of 6,156 root tips was collected from the area directly under the fruiting bodies ofS. confusus were classified representing 16 morphotypes. Among them, type 16 was identical in both the length of the internal transcribed spacer region and the restriction fragment length polymorphism profiles ofAlu I orHinf 1 digests, to those of the fruiting body ofS. confusus. Although a specific ECM association betweenS. confusus andA. firma was confirmed by using molecular tools, the abundance of the ECM roots was consistently low in every soil sample tested. These results suggest that even directly beneathS. confusus fruiting bodies, the occurrence of this species above-ground does not accurately reflect its relative abundance below ground, as evaluated in terms of the number of ECM roots.

Spatiotemporal distribution of fruitbodies of ectomycorrhizal fungi in an Abies firma forest

Abstract Spatial associations between ectomycorrhizal (ECM) fungi and their presumed host trees, and spatiotemporal associations among ECM fungi were surveyed for 3 years in an Abies firma-dominated forest in central Japan. A total of 39 species in 13 genera of ECM fungi were recorded, with more species in the Russulaceae than any other family. Russula ochroleuca, Russula sp.1 and Strobilomyces confusus tended to produce their fruitbodies on the forest floor directly under the crown of A. firma, whereas those of Inocybe cincinnata, Gomphus floccosus and G. fujisanensis were aggregated in limited areas outside the A. firma crown. Interspecific spatial associations were analysed for Russula sp.1, which was the most dominant species, and three other frequent species, I. cincinnata, S. confusus and R. ochroleuca. Pairwise, Russula sp.1 with I. cincinnata, with S. confusus or with R. ochroleuca showed an association which was exclusive, overlapping or independent, respectively. Fruiting phenologies differed in that S. confusus showed a peak density in the summer, whereas the other three species peaked in the autumn. These results suggest that the formation of ECM fruitbodies can be partitioned among the species both spatially and temporally.

Seasonal and environmental changes of mycorrhizal associations and heterotrophy levels in mixotrophic Pyrola japonica (Ericaceae) growing under different light environments

PREMISE OF THE STUDY Mixotrophy is a strategy whereby plants acquire carbon both through photosynthesis and heterotrophic exploitation of mycorrhizal fungi. In Euro-American Pyroleae species studied hitherto, heterotrophy levels vary according to species, sites of study, and possibly light conditions. We investigated mycorrhizal association and mixotrophy in the Asiatic forest species Pyrola japonica, and their plasticity under different light conditions. METHODS Pyrola japonica was sampled bimonthly in sunny and shaded conditions from a deciduous broadleaf forest. We microscopically assessed the rate of fungal colonization and sequenced the ITS to identify the mycorrhizal fungi. We measured (13)C and (15)N isotopic abundances in P. japonica as compared with neighboring autotrophic and mycoheterotrophic plants, to evaluate P. japonicas heterotrophy level. KEY RESULTS Pyrola japonica formed arbutoid mycorrhizas devoid of fungal mantles, with intracellular hyphal coils and a Hartig net. It tended to be more colonized by mycorrhizal fungi in spring and summer. Most associated fungi belonged to ectomycorrhizal taxa, and 84% of identified fungi were Russula spp. Rate of mycorrhizal colonization and Russula frequency tended to be higher in shaded conditions. Both δ(13)C and δ(15)N values of P. japonica were significantly higher in autotrophic plants, showing that about half of the carbon on average was received from mycorrhizal fungi. Both isotopic values negatively correlated with light availability, suggesting higher heterotrophy levels in shaded conditions. CONCLUSIONS The mixotrophic P. japonica undergoes changes in mycorrhizal symbionts and carbon nutrition according to light availability. Our results suggest that during Pyroleae evolution, a tendency to increased heterotrophy emerged in the Pyrola/Orthilia clade.

Temporal variations in endophytic fungal assemblages of Ginkgo biloba L.

We isolated endophytic fungi from living healthy leaves, petioles, and current-year twigs of Ginkgo biloba L. from April to November 2004 with the objective of identifying the dominant endophytic fungal taxa, and monitoring their occurrence and frequency. A total of 9 fungal taxa were identified to the genus level. Diversity measures inferred from the Shannon–Wiener, Morisita–Horn, and Sørensen indices indicated that leaves and petioles harbored more diverse endophytic fungal assemblages than twigs, and that fungal taxa involved in twigs shared less with those in leaves and petioles. Among the organs, the occurrence pattern of overall endophytic fungi differed significantly, and two taxa, Phomopsis sp. and Phyllosticta sp., were the most frequently isolated and thus regarded as the dominant endophytic fungi. Phomopsis sp. was isolated frequently from twigs (84.8%) but rather few from leaves (16.1%) and petioles (24.3%). Phyllosticta sp. was isolated frequently from leaves (72.9%) and petioles (65.7%) but was never isolated from twigs. Temporal changes in relative frequency of total endophytic fungi tended to differ among sampling dates for all three organs. The occurrence of Phyllosticta sp. in both leaves and petioles was first detected in August and peaked in October. Phomopsis sp. was detected in twigs throughout the growing season. These results suggest that the distribution of the two dominant endophytic fungi was organ-specific and differed within seasons.

Effects of sodium chloride on growth of ectomycorrhizal fungal isolates in culture

We studied the tolerance of ectomycorrhizal (ECM) fungi to sodium chloride (NaCl) to find the best fungus to aid growth of Pinus thunbergii. Four ECM fungi, Cenococcum geophilum, Pisolithus tinctorius, Rhizopogon rubescens, and Suillus luteus, were grown in liquid MMN media with five different concentrations of NaCl for 30 days, and their mycelial weights were determined. Mycelial weights of P. tinctorius and R. rubescens were not significantly different between 0 mM and 200 mM, whereas those of C. geophilum and S. luteus decreased with increasing NaCl concentration, indicating that the former two species were more tolerant to higher NaCl concentrations than the latter species. We further studied the intraspecific differences in NaCl tolerance of nine P. tinctorius isolates. They were grown on MMN agar media with six different concentrations of NaCl for 21 days, and their radial growth was measured. In total, the hyphal growth at 25 mM NaCl was significantly higher than those at the other NaCl concentrations, and EC50 values were confirmed at between 50 mM and 200 mM. Among the isolates, Pt03 and Pt21 showed measurable growth at 200 mM; the growth of Pt03 was not significantly different between 0 mM and 200 mM. The results indicate that there are intraspecific variations in NaCl tolerance of Pisolithus species.

The elusive predisposition to mycoheterotrophy in Ericaceae

The rise and diversification of land plants was accompanied by mycorrhizal symbiosis, from their emergence to their adaptation to various biomes and ecological situations (Selosse et al., 2015). In most mycorrhizal associations, fungi provide soil minerals to the plant, in exchange for sugars derived fromphotosynthesis (Smith& Read, 2008; van der Heijden et al., 2015). However, several plant species adapted to shaded forest conditions by secondarily reversing this exchange of carbohydrates: they became achlorophyllous thanks to carbon provided by the fungus. This so-called mycoheterotrophic nutrition is described in over 400 species and evolved at least 40 times independently (Merckx, 2013), raising the question of what predispositions underlie these convergences.

Mycorrhizal morphology of Monotropastrum humile collected from six different forests in central Japan

A survey of the nonphotosynthetic plant Monotropastrum humile was conducted to determine its mycorrhizal status and characterize the fungal structures observed. Thirteen populations and 40 individuals were collected from six forest types, including coniferous and broadleaf trees, in central Japan. The nearly spherical root system of M. humile intertwines with the root systems of neighboring trees, and individual roots were branched up to third-order structure, forming monopodial-pinnate or monopodial-pyramidal morphologies. In addition to the formation of a fungal mantle and Hartig net in association with the epidermis, fungal penetration pegs consistently were observed around and within the epidermal cells. These structures indicate that the mycorrhizal status of M. humile is of the monotropoid type.

Mycorrhizal fungi associated with Monotropastrum humile (Ericaceae) in central Japan.

We explored the diversity of mycorrhizal fungi associated with Monotropastrum humile in the central part of Japans main island. We collected 103 M. humile individuals from 12 sites with various forest types. We analyzed the DNA sequences of the internal transcribed spacer region from fungal and plant nuclear ribosomal DNAs to assess the genetic diversity of the fungi associated with M. humile roots and to position the plant with respect to known Monotropoideae groups, respectively. The plants formed a monophyletic clade with other members of M. humile but were separated from M. humile var. glaberrimum and other monotropes (97% bootstrap support). Of the 50 fungal phylotypes, 49 had best matches with the Russulales, and the other had highest similarity with the Thelephoraceae. Our phylogenetic analysis suggests that M. humile roots have a highly specialized association with fungal partners in the Russulaceae. Moreover, a few fungal phylotypes from the M. humile roots had positions neighboring those from Monotropa uniflora roots. These results indicated that the genetic diversity of mycorrhizal fungi of M. humile was highly specific to the Russulaceae, but with high diversity within that family, and that the fungi associated with M. humile differ from those associated with M. uniflora.

Ectomycorrhizal morphotypes of naturally grown Abies firma seedlings

Ectomycorrhizas of naturally grown Momi fir (Abies firma) seedlings were characterized based on morphological features of fungal partners. A total of 128 seedlings were collected over three years (1995–1997) from a 10×30 m plot where occurrences of ectomycorrhizal fungal fruitbodies were monitored for the same period. Thirty-seven morphologically distinct ectomycorrhizal types were distinguished based mainly on the color of ectomycorrhizas and the characteristics of fungal mantles. Type 37 was thought to beCenococcum geophilum because of the jet-black mycorrhizas and the characteristic structure of mantle surfaces. For half of the classified morphotypes, fungal partners were inferred to be the generaLactarius, Russula, andTuber, and unidentified Basidiomycetes, based on earlier references.