ng-Hyun You

Plant growth-promoting rhizobacteria reduce adverse effects of salinity and osmotic stress by regulating phytohormones and antioxidants in Cucumis sativus

We assessed the role of plant growth-promoting rhizobacteria (PGPR) strains viz. Burkholdera cepacia SE4, Promicromonospora sp. SE188 and Acinetobacter calcoaceticus SE370 in counteracting salinity and drought stress to cucumber plants. The control plants had stunted growth, while PGPR-treated plants had significantly higher biomass and chlorophyll contents under salinity and drought stress. The ameliorative effects of PGPR-application were also evidenced by the increased water potential and decreased electrolytic leakage. The PGPR-applied plants had reduced sodium ion concentration, while the potassium and phosphorus were abundantly present as compared to control under stress. Oxidative stress was mitigated by PGPR through reduced activities of catalase, peroxidase, polyphenol oxidase, and total polyphenol as compared to control. The control plants showed up-regulation of stress-responsive abscisic acid as compared to PGPR application, while salicylic acid and gibberellin 4 were significantly higher in PGPR. In conclusion, the PGPR application might be used in marginalized agricultural lands to increase crop productivity.

Gibberellin-producing Promicromonospora sp. SE188 improves Solanum lycopersicum plant growth and influences endogenous plant hormones

Plant growth-promoting rhizobacteria (PGPR) producing gibberellins (GAs) can be beneficial to plant growth and development. In the present study, we isolated and screened a new strain of Promicromonospora sp., SE188, isolated from soil. Promicromonospora sp. SE188 secreted GAs into its growth medium and exhibited phosphate solubilization potential. The PGPR produced physiologically active (GA1 and GA4) and inactive (GA9, GA12, GA19, GA20, GA24, GA34, and GA53) GAs in various quantities detected by GC/MS-SIM. Solanum lycopersicum (tomato) plants inoculated with Promicromonospora sp. SE188 showed a significantly higher shoot length and biomass as compared to controls where PGPR-free nutrient broth (NB) and distilled water (DW) were applied to plants. The presence of Promicromonospora sp. SE188 significantly up-regulated the non C-13 hydroxylation GA biosynthesis pathway (GA12→GA24→GA9→GA4→ GA34) in the tomato plants as compared to the NB and DW control plants. Abscisic acid, a plant stress hormone, was significantly down-regulated in the presence of Promicromonospora sp. SE188. Contrarily, salicylic acid was significantly higher in the tomato plant after Promicromonospora sp. SE188 inoculation as compared to the controls. Promicromonospora sp. SE188 showed promising stimulation of tomato plant growth. From the results it appears that Promicromonospora sp. SE188 has potential as a bio-fertilizer and should be more broadly tested in field trials for higher crop production in eco-friendly farming systems.

Cadophora malorum Cs‐8‐1 as a new fungal strain producing gibberellins isolated from Calystegia soldanella

Fourteen endophytic fungi with different colony morphologies were isolated from the roots of Calystegia soldanella. Endophytic fungi isolated from C. soldanella were identified by internal transcribed spacer (ITS) region. To verify plant growth promotion (PGP), culture filtrates of isolated endophytic fungi were treated in Waito‐c rice (WR) and C. soldanella seedlings. Culture filtrates of Cs‐8‐1 fungal strain had advanced PGP activity. The presence of physiologically bioactive gibberellins (GA) GA1 (1.213 ng ml−1), GA3 (1.292 ng ml−1), GA4 (3.6 ng ml−1), GA7 (1.328 ng ml−1), other inactive GA9 (0.796 ng ml−1) and GA12 (0.417 ng ml−1), GA20 (0.302 ng ml−1), GA24 (1.351 ng ml−1), GA34 (0.076 ng ml−1), and GA53 (0.051 ng ml−1) in culture filtrates of Cs‐8‐1 fungal strain was detected. The Cs‐8‐1 fungal strain was confirmed as a producer of GAs. Molecular analysis of sequences showed high similarity of 99% to Cadophora malorum. Consequentially, the Cs‐8‐1 fungal strain was identified as a new C. malorum producing GAs.

Aspergillus clavatus Y2H0002 as a New Endophytic Fungal Strain Producing Gibberellins Isolated from Nymphoides pe ltata in Fresh Water.

Abstract Eighteen endophytic fungi with different colony morphologies were isolated from the roots of Nymphoides peltata growing in the Dalsung wetland. The fungal culture filtrates of the endophytic fungi were treated to Waito-c rice seedling to evaluate their plant growth-promoting activities. Culture filtrate of Y2H0002 fungal strain promoted the growth of the Waito-c rice seedlings. This strain was identified on the basis of sequences of the partial internal transcribed spacer region and the partial betatubulin gene. Upon chromatographic analysis of the culture filtrate of Y2H0002 strain, the gibberellins (GAs: GA1, GA3, and GA4) were detected and quantified. Molecular and morphological studies identified the Y2H0002 strain as belonging to Aspergillus clavatus. These results indicated that A. clavatus improves the growth of plants and produces various GAs, and may participate in the growth of plants under diverse environmental conditions.

Diversity and Plant Growth-Promotion of Endophytic Fungi Isolated from the Roots of Plants in Dokdo Islands

Endophytic fungi were isolated from the roots of plants growing naturally on the island of Dokdo. Plant samples, such as Miscanthus sinensis, Achyranthus japonica and Echinochloa crusgali were isolated from Dongdo, and those such as Honkenya peploides and Artemsia koidzumii were isolated from Seodo. Twenty one strains of endophytic fungi were isolated from these plants. To identify the strains, PCR (polymerase chain reaction) amplification of the partial ITS (Internal Transcribed Spacer) regions was done with universal primers ITS-1 and ITS-4 to determine the nucleotide sequence of the ITS regions. Of the strains isolated from Miscanthus sinensis, 75% were Penicillium sp. and 25% were Aspergillus sp. Fifty five percent of strains isolated from Achyranthus japonica were Penicillium sp., 30% were Aspergillus sp. and 15% were Zygorhynchus sp. Strains isolated from Echinochloa crusgali were Penicillium sp. (50%), Aspergillus sp. (12%), Giberella sp. (13%), Talaromyces sp. (9%) and Umbelopsis sp. (8%). Of the strains isolated from Honkenya peploides, 76% were Penicillium sp. and 24% were Pestalotiopsis sp. Strains isolated from Artemisia koidzumii were Penicillium sp. (81%) and Mucor sp. (19%). As a result of bioassay, Ec-3-1 strain isolated from Echinochloa crusgalli showed plant growth-promotion activity. Of all the endophytic fungi isolated, Penicillium sp. was the most abundantly distributed fungal strain in all plants used in this study.

Effects of Endophytic Fungal Secondary Metabolites on the Growth and Physiological Response of Carex kobomugi Ohwi

Abstract Recently, plant growth–promoting endophytic fungi with gibberellins-producing ability were isolated from the roots of coastal sand dune plants. Carex kobomugi Ohwi in coastal sand dunes was treated with the supernatant solution of Penicillium citrinum KACC43900 isolated from Ixeris repens (L.) A. Gray. After treatment, the length of leaf blades, photosynthesis, chlorophyll fluorescence, and soil respiration were measured in the field. The contents of chlorophyll and carotenoid were determined with leaf blades selected for measurement of chlorophyll fluorescence. Fungal culture filtrate (FCF) increased leaf blade length, the contents of chlorophyll a (Chl a) and chlorophyll b (Chl b), total chlorophyll (total Chl [a + b]), and carotenoid in leaf blades of C. kobomugi. FCF also increased net photosynthetic rate (A), transpiration rate (E), carboxylation efficiency (A/Ci), and water-use efficiency (A/E). However, the ratio of variable fluorescence to maximal fluorescence (Fv/Fm) did not show significant difference between control and FCF-treated plants. Soil respiration rates were higher in the site treated with FCF than the control. Although growth response and physiological characteristics of C. kobomugi were different according to the treatment methods of FCF, injection or spray treatment, plant growth of C. kobomugi was increased with FCF treatment.

Cucumber performance is improved by inoculation with plant growth-promoting microorganisms

We investigated the effects of inoculation of Rhodobacter sphaeroides, Lactobacillus plantarum, and Saccharomyces cerevisiae on cucumber plant growth promotion and on the contents of plant hormones, amino acids, and mineral nutrients. We showed that treatment with all three bio-inoculants significantly increased the shoot length, root length, shoot fresh weight, shoot dry weight, and chlorophyll content, via secretion of indole acetic acid and/or organic acids. Inoculation with R. sphaeroides had more favorable effect on plant growth than did inoculation with L. plantarum or S. cerevisiae, by significantly enhancing the gibberellin and reducing the abscisic acid contents. The results of amino acid analysis revealed that inoculation with R. sphaeroides, L. plantarum, and S. cerevisiae generally increased the contents of 17 amino acids, namely, aspartic acid, threonine, serine, glutamic acid, glycine, alanine, cysteine, valine, methionine, isoleucine, leucine, tyrosine, phenylalanine, lysine, histidine, arginine, and proline. With the exception of cysteine, all these amino acids were present in higher concentrations in plants inoculated with R. sphaeroides than in control plants or in plants inoculated with L. plantarum and S. cerevisiae. Furthermore, inoculation with R. sphaeroides significantly increased the calcium, potassium, magnesium, and phosphate contents. Our results suggest that the use of R. sphaeroides, L. plantarum, and S. cerevisiae in agricultural fields can improve plant growth. Moreover, inoculation of cucumber plants with R. sphaeroides regulates plant functional metabolites, thereby promoting plant growth.

Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast

Abstract Twelve plant species were collected from the east coast of Korea to identify culturable endophytes present in their roots. The fungal internal transcribe spacer (ITS) region (ITS1-5.8SrRNA-ITS2) was used as a DNA barcode for identification of fungi. A total of 194 fungal strains were identified and categorized into 31 genera. The genus Penicillium accounted for the largest number of strains, followed by the genus Aspergillus. Furthermore, using 5 statistical methods, the diversity indices of the fungi were calculated at the genus level. After comprehensive evaluation, the endophytic fungal group from Phragmites australis ranked highest in diversity analyses. Several strains responsible for plant growth and survival (Penicillium citrinum, P. funiculosum, P. janthinellum, P. restrictum, and P. simplicissimum), were also identified. This study provides basic data on the sheds light on the symbiotic relationship between coastal plants and fungi.

Diversity of Endophytic Fungi from the Roots of Halophytes Growing in Go-chang Salt Marsh

Halophyte samples, such as Suaeda japonica, Phragmites australis, Limonium tetragonum, Suaeda maritima were collected from Go-chang salt marsh. Thirty-nine endophytic fungal strains were isolated from the roots of halophytes naturally growing in salt marsh. All endophytic fungal strains isolated were analyzed by internal transcribed spacer (ITS) containing ITS1, 5.8 s and ITS2 region. Endophytic fungal strains belong to eight orders, i.e., Eurotiales (36%), Pleosporales (26%), Hypocreales (18%), Incertae sedis (8%), Glomerellales (5%), Sordariales (2%), Xylariales (2%), and Capnodiales (3%). On genus level, they were composed of Alternaria, Aspergillus, Chaetomium, Cladosporium, Colletotrichum, Coniothyrium, Dothideomycete, Fusarium, Gibberella, Macrophoma, Penicillium, Pestalotiopsis, Phaeosphaeria, Phoma, Pleosporales, Pseudozyma, Talaromyces, and Termitomyces. Of them, Penicillium (26%), Fusarium (13%) of Eurotiales and Hypocreales were predominant.

Plant Growth-Promoting Activity and Genetic Diversity of Endophytic Fungi Isolated from Native Plants in Dokdo Islands for Restoration of a Coastal Ecosystem

In this study, plant samples of five species were collected from the Dokdo islands in South Korea. Plant samples such as Asparagus schoberioides, Corydalis platycarpa, Festuca rubra, Sedum oryzifolium, and Setaria viridis were collected from the Dongdo and Seodo. Endophytic fungal strains were isolated from the roots of five plants from the Dokdo islands. Thirty-three fungal strains were isolated from these native plants. All the endophytic fungi were analyzed by internal transcribed spacer (ITS) sequencing (ITS containing ITS1, 5.8s, and the ITS2 region). Waito-c rice seedlings were treated with fungal culture filtrates to test their plant growth-promoting activity. A bioassay of the D-So-1-1 fungal strain isolated from S. oryzifolium confirmed that it has the highest plant growth-promoting activity. All the endophytic fungi belong to four orders: Eurotiales (86%), Capnodiales (3%), Hypocreales (4%), and Incertae sedis (7%). The endophytic fungi were classified as Ascomycota, which contained Aspergillus (12%), Cladosporium (3%), Eurotium (3%), Fusarium (18%), Microsphaeropsis (6%), and Penicillium (58%) at the genus level.