YuJin Shin

Formations of calcium carbonate minerals by bacteria and its multiple applications

Abstract Biomineralization is a naturally occurring process in living organisms. In this review, we discuss microbially induced calcium carbonate precipitation (MICP) in detail. In the MICP process, urease plays a major role in urea hydrolysis by a wide variety of microorganisms capable of producing high levels of urease. We also elaborate on the different polymorphs and the role of calcium in the formation of calcite crystal structures using various calcium sources. Additionally, the environmental factors affecting the production of urease and carbonate precipitation are discussed. This MICP is a promising, eco-friendly alternative approach to conventional and current remediation technologies to solve environmental problems in multidisciplinary fields. Multiple applications of MICP such as removal of heavy metals and radionuclides, improve the quality of construction materials and sequestration of atmospheric CO2 are discussed. In addition, we discuss other applications such as removal of calcium ions, PCBs and use of filler in rubber and plastics and fluorescent particles in stationary ink and stationary markers. MICP technology has become an efficient aspect of multidisciplinary fields. This report not only highlights the major strengths of MICP, but also discusses the limitations to application of this technology on a commercial scale.

Antibiotic resistance of Shewanella putrefaciens isolated from shellfish collected from the West Sea in Korea.

In this study, we isolated and characterized Shewanella putrefaciens from shellfish harvested from the West Sea in Korea. For the initial isolation of S. putrefaciens, LB agar plates supplemented with ferrous sulfate and sodium thiosulfate were inoculated with shellfish homogenates, incubated for 24h, and then black colonies were selected. Gram-negative and catalase-positive colonies were subsequently confirmed by PCR assays and API 20E kit test system. The Shewanella-specific 16S rRNA and gyrB genes were used to design S. putrefaciens-specific PCR primers. From 6 species of shellfish tested, 24 S. putrefaciens strains were isolated. These 24 isolates had the following profiles of resistance against 16 antibiotics: all the isolates were resistant to cephalothin and vancomycin and 95.8% were resistant to ampicillin. Here, we report the isolation of S. putrefaciens from shellfish and our results point to a new possible route for exposing healthy individuals to S. putrefaciens.

Characterization of Vibrio parahaemolyticus isolated from oysters in Korea: Resistance to various antibiotics and prevalence of virulence genes

Vibrio parahaemolyticus, found frequently in oysters, is the most prevalent gastroenteritis-causing pathogen in Korea and in several other Asian countries. This study monitored changes in the environmental parameters and occurrence of V. parahaemolyticus in oyster aquaculture sites. Of the 44 presumed V. parahaemolyticus isolates obtained, when tested against 16 antibiotics, 90.9, 86.4, and 75.0% of the 44 isolates exhibited resistance to vancomycin, ampicillin, and streptomycin, respectively. PCR analysis for the presence of the toxR gene confirmed 31 of the 44 isolates as being positive V. parahaemolyticus strains. The toxR positive isolates were tested for the presence of thermostable direct hemolysin (tdh) and tdh-related hemolysin (trh) virulence genes. Only 9.1% toxR positive isolate exhibit the trh gene and none of the isolates were tested positive for tdh. The occurrence of multi drug resistance strains in the environment could be an indication of excessive usage of antibiotics in agriculture and aquaculture fields.

Isolation of Lactobacillus strains from shellfish for their potential use as probiotics

Microorganisms intended for use as probiotics in aquaculture should exert antimicrobial activity and be regarded as safe not only for their aquatic hosts but also for their surrounding environments and humans. The objective of this work was to investigate antimicrobial activity against various pathogens, bile salt tolerance, and acid tolerance of 65 presumptive Lactobacillus spp. isolated from shellfish samples. Four strains (HL1, HL12, HL20, and JL28) were selected after qualitatively identifying high levels of antimicrobial activity against bacteria including Staphylococcus aureus, Salmonella typhimurium, Salmonella enteritidis, Escherichia coli O157:H7, Vibrio ichthyoenteri, Edwardsiella tarda, Streptococcus iniae, and V. parahaemolyticus. The sequence analysis of their 16S rRNA genes revealed that the four strains belong to the Lactobacillus plantarum species. In addition, their survivability was tested in bile salt and acidic conditions to show their potential use as probiotics in the gastrointestinal tract.

Heat adaptation improves viability of Lactococcus lactis subsp. lactis HE-1 after heat stress

We have studied the potential of environmental adaptation as a survival mechanism to enable lactic acid bacteria to withstand spray drying. The formulation process of these bacteria exposes them to stresses such as heating and dehydration on daily basis. In the present study, the effect of heat adaptation on subsequent exposure of Lactobacillus lactis subsp. lactis HE-1 cells to various types of lethal stress was examined by comparing the viability of heat-adapted cells with nonadapted ones. The responses of heat-adapted cells to other environmental stresses such as H2O2, heat, acid, and ethanol were also examined. The results showed that heat-adapted cells had a higher survival rate than the non-adapted cells. Morphological analysis was performed to explain the observed differences. The adaptation mechanisms in response to stresses in L. lactis subsp. lactis HE-1 are to be fundamental for survival during spray drying process.

Antibiotic and heavy-metal resistance of Vibrio parahaemolyticus isolated from oysters in Korea

Vibrio parahaemolyticus, found frequently in oysters and other seafoods, is the most prevalent gastroenteritis-causing pathogen in Korea and other Asian countries. It is associated exclusively with the consumption of raw or improperly cooked contaminated seafood, especially oysters. In this study, we isolated and characterized 59 V. parahaemolyticus strains (toxR-positive) from May to October 2016 in shellfish-harvesting areas off the west coast of Korea. The results revealed that none of the isolates contained the tdh and trh toxicity genes. The multiple antibiotic resistance (MAR) value of most isolates was 0.32, but it was as high as 0.69 in one isolate strain. Moreover, when resistance to heavy metals was examined, the majority of the isolates displayed resistance to Ba2+ (98.3%), Co3+ (28.8%), Cd2+ (16.9%), and Cu2+ (13.6%). Interestingly our data revealed that tolerance to heavy metals was prevalent in the V. parahaemolyticus strains with more than two antibiotic resistance phenotypes.

Impact of inland pollution sources on the bacteriological water quality of the Southern Ganghwado Bay Area, South Korea

The bacteriological pollution of water is a serious global environmental issue. The pollution of water by human and animal wastes can be a source of hazardous pathogens, which may pose serious health risks. In this study, we evaluated the microbiological water quality in the southern Ganghwado Bay area, South Korea. A total of 30 samples (14 discharge water samples from the drainage area and 16 sea water samples from the adjacent area) were analyzed for the concentrations of total coliforms (TC) and fecal coliforms (FC) in November 2013. The highest concentration of FC (28,000 MPN/100 mL) was found at site L1 (inland). The highest mean concentrations of coliforms were found at sites W9 (sea water) and W11 (sea water), with TC and FC concentrations of 33 MPN/100 mL. In conclusion, site L1 located near W9 and W11 is clearly identified as the main source of pollution at Dongmak Beach.

Characterization and Antifungal Activity against Candida albicans of Vaginal Lactobacillus spp. Isolated from Korean Women

Vulvovaginal candidiasis (VVC) is one of the urogenital infections occurring in women worldwide. Candida albicans is generally observed among various types of microorganisms causing VVC. Antibiotic therapy is typical, and the use of Lactobacilli probiotics is to be recognized as a promising alternat...

Biosequestration of copper by bacteria isolated from an abandoned mine by using microbially induced calcite precipitation

Abandoned mine sites are frequently polluted with high concentrations of heavy metals. In this study, 25 calcite-forming bacteria were newly isolated from the soil of an abandoned metal mine in Korea. Based on their urease activity, calcite production, and resistance to copper toxicity, four isolates were selected and further identified by 16S rRNA gene sequencing. Among the isolates, Sporosarcina soli B-22 was selected for subsequent copper biosequestration studies, using the sand impermeability test by production of calcite and extracellular polymeric substance. High removal rates (61.8%) of copper were obtained when the sand samples were analyzed using an inductively coupled plasma-optical emission spectrometer following 72 h of incubation. Scanning electron microscopy showed that the copper carbonate precipitates had a diameter of approximately 5-10 μm. X-ray diffraction further confirmed the presence of copper carbonate and calcium carbonate crystals.

Erratum to: Bioremediation of Cd by Microbially Induced Calcite Precipitation

The Editor wishes to draw your attention to the inadvertent duplicate publication of “Bioremediation of Cd by Microbially Induced Calcite Precipitation” by Chang-Ho Kang, SangHyun Han, YuJin Shin, Soo Ji Oh, Jae-Seong So published in Applied Biochemistry and Biotechnology, Volume 172, Issue 4, pp 1929–1937 (February 2014). This article was also published in Applied Biochemistry and Biotechnology, Volume 172, Issue 6, pp 2907–2915 (March 2014) by the same authors. Appl Biochem Biotechnol (2015) 176:645 DOI 10.1007/s12010-015-1558-6