Yukinori Tani

Structure of nanocrystalline phyllomanganates produced by freshwater fungi

Abstract The crystal structures of biogenic Mn oxides produced by three fungal strains isolated from stream pebbles were determined using chemical analyses, XANES and EXAFS spectroscopy, and powder X-ray diffraction. The fungi-mediated oxidation of aqueous Mn2+ produces layered Mn oxides analogous to vernadite, a natural nanostructured and turbostratic variety of birnessite. The crystallites have domain dimensions of ~10 nm in the layer plane (equivalent to ~35 MnO6 octahedra), and ~1.5-2.2 nm perpendicularly (equivalent to ~2-3 layers), on average. The layers have hexagonal symmetry and from 22 to 30% vacant octahedral sites. This proportion likely includes edge sites, given the extremely small lateral size of the layers. The layer charge deficit, resulting from the missing layer Mn4+ cations, is balanced mainly by interlayer Mn3+ cations in triple-corner sharing position above and/or below vacant layer octahedra. The high surface area, defective crystal structure, and mixed Mn valence confer to these bio-minerals an extremely high chemical reactivity. They serve in the environment as sorption substrate for trace elements and possess catalytic redox properties.

Manganese(IV) Oxide Production by Acremonium sp. Strain KR21-2 and Extracellular Mn(II) Oxidase Activity

ABSTRACT Ascomycetes that can deposit Mn(III, IV) oxides are widespread in aquatic and soil environments, yet the mechanism(s) involved in Mn oxide deposition remains unclear. A Mn(II)-oxidizing ascomycete, Acremonium sp. strain KR21-2, produced a Mn oxide phase with filamentous nanostructures. X-ray absorption near-edge structure (XANES) spectroscopy showed that the Mn phase was primarily Mn(IV). We purified to homogeneity a laccase-like enzyme with Mn(II) oxidase activity from cultures of strain KR21-2. The purified enzyme oxidized Mn(II) to yield suspended Mn particles; XANES spectra indicated that Mn(II) had been converted to Mn(IV). The pH optimum for Mn(II) oxidation was 7.0, and the apparent half-saturation constant was 0.20 mM. The enzyme oxidized ABTS [2,2′-azinobis(3-ethylbenzothiazoline-6-sulfonic acid)] (pH optimum, 5.5; Km, 1.2 mM) and contained two copper atoms per molecule. Moreover, the N-terminal amino acid sequence (residues 3 to 25) was 61% identical with the corresponding sequence of an Acremonium polyphenol oxidase and 57% identical with that of a Myrothecium bilirubin oxidase. These results provide the first evidence that a fungal multicopper oxidase can convert Mn(II) to Mn(IV) oxide. The present study reinforces the notion of the contribution of multicopper oxidase to microbially mediated precipitation of Mn oxides and suggests that Acremonium sp. strain KR21-2 is a good model for understanding the oxidation of Mn in diverse ascomycetes.

Sorption of Co(II), Ni(II), and Zn(II) on Biogenic Manganese Oxides Produced by a Mn-Oxidizing Fungus, Strain KR21-2

Abstract The characteristics of Co(II), Ni(II), and Zn(II) sorption on freshly produced biogenic Mn oxides by a Mn-oxidizing fungus, strain KR21-2, were investigated. The biogenic Mn oxides showed about 10-fold higher efficiencies for sorbing the metal ions than a synthetic Mn oxide (γ-MnO2) on the basis of unit weight and unit surface area. The order of sorption efficiency on the biogenic Mn oxides was Co(II) > Zn(II) > Ni(II), while that on the synthetic Mn oxide was Zn(II) > Co(II) > Ni(II). These sorption selectivities were confirmed by both sorption isotherms and competitive sorption experiments. Two-step extraction, using 10 mM CuSO4 solution for exchangeable sorbed ions and 10–20 mM hydroxylamine hydrochloride for ions bound to reducible Mn oxide phase, showed higher irreversibility of Co(II) and Ni(II) sorption on the biogenic Mn oxides while Zn(II) sorption was mostly reversible (Cu(II)-exchangeable). Sorptions of Co(II), Ni(II), and Zn(II) on the synthetic Mn oxide were, however, found to be mostly reversible. Higher irreversibility of Co(II) and Ni(II) sorption on the biogenic Mn oxides may partly explain higher accumulation of these metal ions in Mn oxide phases in natural environments. The results obtained in this study raise the possibility to applying the biogenic Mn oxide formation to treatment of water contaminated with toxic metal ions.

Biogeochemistry of manganese oxide coatings on pebble surfaces in the Kikukawa River System, Shizuoka, Japan

The biogeochemistry of Mn-oxide coatings formed over submerged pebble surfaces on the streambed of the Kikukawa river system has been investigated. Located in central Shizuoka, Japan, this system drains strongly acidified soils under tea plantations. Besides containing high amounts of Mn (up to 450 μg/cm2), the coatings are capable of scavenging and accumulating other elements including Ba, Zn, Ni, Co, W, Mo and Sb. When suspensions of the coating material were incubated with 0.2 mM Mn2+, the Mn(II) ion was microbially transformed into Mn-oxides. When the same suspensions were spread on agar plates containing acetate, yeast-extract, and 1.0 mM Mn2+ (AY agar medium) both Mn-oxidizing bacteria and fungi appeared, indicating the existence of a diversity of Mn-oxidizing microorganisms in the system. Plate counts using two agar culture media with varied nutrient levels indicated that the ability of these microorganisms to oxidize Mn(II) was strongly dependent on nutrient supply. The relatively nutrient-poor AY agar medium was more conducive to microbial growth than the K1 agar medium with a higher organic nutrient content. Concentrations of Mn dissolved in the stream waters did not correlate well with the amounts of solid Mn on submerged pebbles. Thus, factors other than dissolved Mn concentration (e.g., organic nutrient supply and pH) determined the ability of microorganisms to oxidize Mn in the streambeds. A survey of dissolved Mn in streams and water draining tea plantations combined with chemical analysis of Mn in the underlying soils indicate that the soils have been strongly acidified through excessive applications of N-fertilizers. As a result, Mn was leached from the soil column into the Kikukawa river system. Biogenic Mn-oxide coatings on streambeds can therefore serve as an indicator of soil acidification and metal leaching from soils of the corresponding watershed.

Production of Biogenic Manganese Oxides by Anamorphic Ascomycete Fungi Isolated from Streambed Pebbles

We characterized the production of biogenic Mn oxides by four anamorphic ascomycete fungi isolated from streambed pebbles with Mn oxide coatings. Based on the 18S rRNA gene sequences, one strain was related to members of the order Xylariales and the other three were within distinct lineages of the Pleosporales. These strains oxidized Mn(II) to deposit Mn oxides when their growth approached the stationary phase. The fungal Mn oxides showed X-ray diffraction patterns typical of poorly crystalline vernadite (δ -MnO2), and X-ray absorption near-edge structure spectroscopy confirmed that the Mn phases consisted predominantly of Mn(IV). Mn(II) oxidation in the four strains proceeded enzymatically. The Mn(II)-oxidizing proteins were inhibited by azide and o-phenanthroline, and the proteins also oxidized typical laccase substrates including 2,2′-azinobis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), showing the role of laccase or a laccase-like metalloenzyme. The mineralogical traits of the biogenic Mn oxides, and the participation of laccase-like enzymes, are in accordance with our previous results obtained with one Hypocreales ascomycete. In conclusion, phylogenetically diverse ascomycetes may use this common enzymatic system to produce solid Mn phases similar to δ -MnO2.

Temporal changes in the phytoplankton community of the southern basin of Lake Baikal over the last 24,000 years recorded by photosynthetic pigments in a sediment core

Photosynthetic pigments and other indicators of phytoplankton were analyzed in a dated undisturbed sediment core obtained from the southern basin of Lake Baikal to reveal temporal changes in the phytoplankton community in the lake through the last glacial/post-glacial transition. The sedimentation age of the core spans the last 24 14 C ka. Chlorophyll a, its derivatives, carotenoids and total organic carbon (TOC) started to increase after 15 14 C ka, and the onset of biogenic silica occurred at 10 14 C ka. This indicated that the post-glacial growth of diatoms was preceded by that of other phytoplankton groups. In the record of the pigments and TOC, a temporary decrease was observed in the period 11.5-10.5 14 C ka, corresponding to the Younger Dryas cold period. The similarity found between the depth profiles of pyropheophytin a and steryl chlorin esters formed through predation of phytoplankton by zooplankton and that of TOC suggested the important contribution of fecal pellets to sedimentary organic matter in the lake.

Sedimentary records of metal deposition in Japanese alpine lakes for the last 250 years: Recent enrichment of airborne Sb and In in East Asia

Concentrations of 18 elements, including Sb, In, Sn, and Bi, were measured in sediment cores from two pristine alpine lakes on Mount Hachimantai, northern Japan, representing the past 250 years. Vertical variations in concentrations are better explained by atmospheric metal deposition than by diagenetic redistribution of Fe and Mn hydroxide and organic matter. Anthropogenic metal fluxes were estimated from (210)Pb-derived accumulation rates and metal concentrations in excess of the Al-normalized mean background concentration before 1850. Anthropogenic fluxes of Sb and In showed gradual increases starting around 1900 in both lakes, and marked increases after 1980. Comparison of Sb/Pb and Pb stable isotope ratios in sediments with those in aerosols of China or northern Japan and Japanese source materials (recent traffic- and incinerator-derived dust) suggest that the markedly elevated Sb flux after 1980 resulted primarily from enhanced long-range transport in aerosols containing Sb and Pb from coal combustion on the Asian continent. The fluxes of In, Sn, and Bi which are present in Chinese coal showed increasing trends similar to Sb for both study lakes. This suggests that the same source although incinerators in Japan may not be ruled out as sources of In. The sedimentary records for the last 250 years indicate that atmospheric pollution of Sb and In in East Asia have intensified during recent decades.

Removal of heavy metal cations by biogenic magnetite nanoparticles produced in Fe(III)-reducing microbial enrichment cultures

The biogenic magnetite nanoparticles presented here had a high capacity of adsorbing metal cations, which was approximately 30- to 40-fold greater than commercially available magnetite. These results suggest the potential application of microbial magnetite formation in the removal of toxic metal cations from water.

Evaluating the Contribution of Long-Range Transport of Heavy Metals from the Asian Continent to Their Concentrations in Sediment Cores from Lake Shinji, Western Japan

The historical trend of heavy metal pollution recorded in sediment cores from Lake Shinji, western Japan, was investigated to evaluate the contribution of increasing long-range transport of heavy metals from the Asian continent in recent years. The concentrations of Cd, Co, Cr, Cu, Ni, Pb, Sb, and Zn and lead isotope ratios were determined for sediment cores collected at two sites in the lake. Among the metals, Cd, Sb, and Zn showed markedly high concentrations since the 1970s. Moreover, a high Pb concentration and less radiogenic lead isotope ratios have been observed since the 1980s in the core from a site close to the mouth of a major river. Air masses from the Asian continent, including China, Russia, and South Korea, have less radiogenic lead isotope ratios than those from Japan. This suggests that the recent increase in Pb concentration in the sediment core is primarily due to the long-range transport of heavy metals from the Asian continent, followed by their deposition in the catchment area of the river. The concentration ratios of Pb/Cd, Pb/Sb, and Pb/Zn of the sediment around 2000 were calculated on the basis of the metal concentrations in excess of those before 1940. They were then compared with the volume-weighted annual average concentration ratios of Pb/Cd, Pb/Sb, and Pb/Zn of rain samples collected on the shore of the lake for 1999–2001. The result showed that the ratios of the former to the latter are 1.0 for Cd, 0.69 for Sb, and 0.31 for Zn. Thus, it is likely that the long-range transport of Cd and Sb from the Asian continent also contributes significantly to the recent increase in the concentrations of these metals in the sediment core from Lake Shinji. For Zn, however, the contribution from the Asian continent was evaluated to be small, suggesting the importance of local sources such as effluent discharges.

Evaluation of the ishikawa cell line bioassay for the detection of estrogenic substances from sediment extracts

This study examines the application of Ishikawa human endometrial adenocarcinoma cells to measure the estrogenic activity of fractionated extracts of sediments from Tokyo Bay, Japan. Estrogen stimulates alkaline phosphatase activity in this cell line. The results of these assays were compared with those of a yeast estrogen screen (YES) assay. The Ishikawa cell line bioassay showed higher sensitivity to 17beta-estradiol (median effective concentration [EC50], 10.7 pM) than did the YES assay (EC50, 480 pM). Fractionation of sediment extracts (all samples collected from 5 sites) showed that the nonpolar fraction was poisonous to yeast cells; the estrogenic activity of this fraction, therefore, could not be measured by YES. However, the nonpolar fraction did not kill the Ishikawa cells. The 17beta-estradiol-equivalent values of 15 extracts (3 fractions from each of 5 sediment samples) ranged from 5.7 to 697 pg/g dry weight according to the Ishikawa cell line bioassay. Chemical analysis using gas chromatography-mass spectrometry revealed that the highest concentrations of endocrine-disrupting chemicals were observed at the sampling station near the sewage treatment plant. The results support that the Ishikawa cell line bioassay is suitable for measuring the estrogenic activity of sediment samples.