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Featured researches published by Yundang Wu.


Environmental Science & Technology | 2014

Exogenous Electron Shuttle-Mediated Extracellular Electron Transfer of Shewanella putrefaciens 200: Electrochemical Parameters and Thermodynamics

Yundang Wu; Tongxu Liu; Xiaomin Li; Fangbai Li

Despite the importance of exogenous electron shuttles (ESs) in extracellular electron transfer (EET), a lack of understanding of the key properties of ESs is a concern given their different influences on EET processes. Here, the ES-mediated EET capacity of Shewanella putrefaciens 200 (SP200) was evaluated by examining the electricity generated in a microbial fuel cell. The results indicated that all the ESs substantially accelerated the current generation compared to only SP200. The current and polarization parameters were linearly correlated with both the standard redox potential (E(ES)(0)) and the electron accepting capacity (EAC) of the ESs. A thermodynamic analysis of the electron transfer from the electron donor to the electrode suggested that the EET from c-type cytochromes (c-Cyts) to ESs is a crucial step causing the differences in EET capacities among various ESs. Based on the derived equations, both E(ES)(0) and EAC can quantitatively determine potential losses (ΔE) that reflect the potential loss of the ES-mediated EET. In situ spectral kinetic analysis of ES reduction by c-Cyts in a living SP200 suspension was first investigated with the E(ES), E(c-Cyt), and ΔE values being calculated. This study can provide a comprehensive understanding of the role of ESs in EET.


Frontiers in Microbiology | 2016

Effects of Incubation Conditions on Cr(VI) Reduction by c-type Cytochromes in Intact Shewanella oneidensis MR-1 Cells

Rui Han; Fangbai Li; Tongxu Liu; Xiaomin Li; Yundang Wu; Ying Wang; Dandan Chen

It is widely recognized that the outer membrane c-type cytochromes (OM c-Cyts) of metal-reducing bacteria play a key role in microbial metal reduction processes. However, the in situ redox status of OM c-Cyts during microbial metal reduction processes remain poorly understood. In this study, diffuse-transmission UV/Vis spectroscopy is used to investigate the in situ spectral reaction of Cr(VI) reduction by c-Cyts in intact Shewanella oneidensis MR-1 cells under different incubation conditions. The reduced c-Cyts decreased transiently at the beginning and then recovered gradually over time. The Cr(VI) reduction rates decreased with increasing initial Cr(VI) concentrations, and Cr(III) was identified as a reduced product. The presence of Cr(III) substantially inhibited Cr(VI) reduction and the recovery of reduced c-Cyts, indicating that Cr(III) might inhibit cell growth. Cr(VI) reduction rates increased with increasing cell density. The highest Cr(VI) reduction rate and fastest recovery of c-Cyts were obtained at pH 7.0 and 30°C, with sodium lactate serving as an electron donor. The presence of O2 strongly inhibited Cr(VI) reduction, suggesting that O2 might compete with Cr(VI) as an electron acceptor in cells. This study provides a case of directly examining in vivo reaction properties of an outer-membrane enzyme during microbial metal reduction processes under non-invasive physiological conditions.


Scientific Reports | 2016

In Situ Spectral Kinetics of Cr(VI) Reduction by c-Type Cytochromes in A Suspension of Living Shewanella putrefaciens 200.

Tongxu Liu; Xiaomin Li; Fangbai Li; Rui Han; Yundang Wu; Xiu Yuan; Ying Wang

Although c-type cytochromes (c-Cyts) mediating metal reduction have been mainly investigated with in vitro purified proteins of dissimilatory metal reducing bacteria, the in vivo behavior of c-Cyts is still unclear given the difficulty in measuring the proteins of intact cells. Here, c-Cyts in living Shewanella putrefaciens 200 (SP200) was successfully quantified using diffuse-transmission UV/Vis spectroscopy due to the strong absorbance of hemes, and the in situ spectral kinetics of Cr(VI) reduction by c-Cyts were examined over time. The reduced product Cr(III) observed on the cell surface may play a role in inhibiting the Cr(VI) reduction and reducing the cell numbers with high concentrations (>200 μM) of Cr(VI) evidenced by the 16S rRNA analysis. A brief kinetic model was established with two predominant reactions, redox transformation of c-Cyts and Cr(VI) reduction by reduced c-Cyts, but the fitting curves were not well-matched with c-Cyts data. The Cr(III)-induced inhibitory effect to the cellular function of redox transformation of c-Cyts was then added to the model, resulting in substantially improved the model fitting. This study provides a case of directly examining the reaction properties of outer-membrane enzyme during microbial metal reduction processes under physiological conditions.


Acta Geochimica | 2017

The in situ spectral methods for examining redox status of c-type cytochromes in metal-reducing/oxidizing bacteria

Xiaobo Luo; Yundang Wu; Xiaomin Li; Dandan Chen; Ying Wang; Fangbai Li; Tongxu Liu

The membrane-associated c-type cytochromes (c-Cyts) have been well known as the key enzymes mediating extracellular electron transfer to terminal electron acceptors, resulting in biogeochemical elemental transformation, contaminant degradation, and nutrient cycling. Although c-Cyts-mediated metal reduction or oxidation have been mainly investigated with the purified proteins of metal reducing/oxidizing bacteria, the in vivo behavior of c-Cyts is still unclear, given the difficulty in measuring the proteins of intact cells. Fortunately, the in situ spectroscopy would be ideal for measuring the reaction kinetics of c-Cyts in intact cells under noninvasive physiological conditions. It can also help the establishment of kinetic/thermodynamic models of extracellular electron transfer processes, which are essential to understand the electron transfer mechanisms at the molecular scale. This review briefly summarizes the current advances in spectral methods for examining the c-Cyts in intact cells of dissimilatory metal reducing bacteria and Fe(II)-oxidizing bacteria.


Chemical Geology | 2016

Fe(II)-induced phase transformation of ferrihydrite: The inhibition effects and stabilization of divalent metal cations

Chengshuai Liu; Zhenke Zhu; Fangbai Li; Tongxu Liu; Changzhong Liao; Jey-Jau Lee; Kaimin Shih; Liang Tao; Yundang Wu


Electrochimica Acta | 2016

pH dependence of quinone-mediated extracellular electron transfer in a bioelectrochemical system

Yundang Wu; Fangbai Li; Tongxu Liu; Rui Han; Xiaobo Luo


Physical Review B | 2006

Ab initio molecular dynamics simulations on structural change of liquid eutectic alloy Ge 15 Te 85 from 573 to 1073 K

Guangjun Zhao; Chengshuai Liu; Yundang Wu; Er-Guang Jia; Z.G. Zhu


Journal of Physics: Condensed Matter | 2006

Structure and properties of liquid InSb alloy below and above the melting point: ab initio molecular dynamics simulations

Yundang Wu; Guangjun Zhao; C. S. Liu; Z.G. Zhu


Chemical Geology | 2018

Biological and chemical processes of microbially mediated nitrate-reducing Fe(II) oxidation by Pseudogulbenkiania sp. strain 2002

Dandan Chen; Tongxu Liu; Xiaomin Li; Fangbai Li; Xiaobo Luo; Yundang Wu; Ying Wang


Colloids and Surfaces A: Physicochemical and Engineering Aspects | 2017

In situ spectral kinetics of quinone reduction by c-type cytochromes in intact Shewanella oneidensis MR-1 cells

Rui Han; Xiaomin Li; Yundang Wu; Fangbai Li; Tongxu Liu

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Tongxu Liu

Chinese Academy of Sciences

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Fangbai Li

Hong Kong Polytechnic University

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Xiaomin Li

South China Agricultural University

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Rui Han

South China University of Technology

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Dandan Chen

Chinese Academy of Sciences

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Xiaobo Luo

Chinese Academy of Sciences

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Ying Wang

Chinese Academy of Sciences

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Chengshuai Liu

Chinese Academy of Sciences

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Guangjun Zhao

Chinese Academy of Sciences

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