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Featured researches published by Yunqiao Pu.


Journal of Wood Chemistry and Technology | 2007

Ionic Liquid as a Green Solvent for Lignin

Yunqiao Pu; Nan Jiang; Arthur J. Ragauskas

Abstract This study examined the application of select ionic liquids (ILs) as aprotic green solvents for lignin. Dissolution experiments were carried out employing lignin isolated from pine kraft pulp. Up to 20 wt% lignin could be dissolved in [hmim][CF3SO3], [mmim][MeSO4] and [bmim][MeSO4]. For the [bmim]+‐containing ionic liquids, the order of lignin solubility for varying anions was: [MeSO4]−>Cl−∼Br−⋙[PF6]−, indicating that the solubility of lignin was principally influenced by the nature of the anions. Ionic liquids containing large, non‐coordinating anions [PF4]− and [PF6]− were unsuitable as a solvent for lignin. 13C nuclear magnetic resonance (NMR) analyses of lignin and model compounds showed that 13C signals using ionic liquid as a solvent were shifted up‐field by δ 0.1 to 1.9 ppm in comparison to 13C NMR data acquired using dimethyl sulfoxide (DMSO) as the solvent.


Biotechnology for Biofuels | 2013

Assessing the molecular structure basis for biomass recalcitrance during dilute acid and hydrothermal pretreatments

Yunqiao Pu; Fan Hu; Fang Huang; Brian H. Davison; Arthur J. Ragauskas

The production of cellulosic ethanol from biomass is considered a promising alternative to reliance on diminishing supplies of fossil fuels, providing a sustainable option for fuels production in an environmentally compatible manner. The conversion of lignocellulosic biomass to biofuels through a biological route usually suffers from the intrinsic recalcitrance of biomass owing to the complicated structure of plant cell walls. Currently, a pretreatment step that can effectively reduce biomass recalcitrance is generally required to make the polysaccharide fractions locked in the intricacy of plant cell walls to become more accessible and amenable to enzymatic hydrolysis. Dilute acid and hydrothermal pretreatments are attractive and among the most promising pretreatment technologies that enhance sugar release performance. This review highlights our recent understanding on molecular structure basis for recalcitrance, with emphasis on structural transformation of major biomass biopolymers (i.e., cellulose, hemicellulose, and lignin) related to the reduction of recalcitrance during dilute acid and hydrothermal pretreatments. The effects of these two pretreatments on biomass porosity as well as its contribution on reduced recalcitrance are also discussed.


Applied Biochemistry and Biotechnology | 2010

Structural Characterization and Comparison of Switchgrass Ball-milled Lignin Before and After Dilute Acid Pretreatment

Reichel Samuel; Yunqiao Pu; Babu Raman; Arthur J. Ragauskas

To reduce the recalcitrance and enhance enzymatic activity, dilute H2SO4 pretreatment was carried out on Alamo switchgrass (Panicum virgatum). Ball-milled lignin was isolated from switchgrass before and after pretreatment. Its structure was characterized by 13C, HSQC, and 31P NMR spectroscopy. It was confirmed that ball-milled switchgrass lignin is of HGS type with a considerable amount of p-coumarate and felurate esters of lignin. The major ball-milled lignin interunit was the β-O-4 linkage, and a minor amount of phenylcoumarin, resinol, and spirodienone units were also present. As a result of the acid pretreatment, there was 36% decrease of β-O-4 linkage observed. In addition to these changes, the S/G ratio decreases from 0.80 to 0.53.


Energy and Environmental Science | 2011

Application of quantitative 31P NMR in biomass lignin and biofuel precursors characterization

Yunqiao Pu; Shilin Cao; Arthur J. Ragauskas

The last decade has seen tremendous growth and interest in renewable energy and fuels aimed primarily at addressing issues of climate change, energy security, and rising energy costs. These efforts coupled with the demand for efficient utilization of biomass place a premium on the detailed analysis of the fundamental chemical structures of biomass, especially in light of the ever-increasing efforts to generate transgenic plants with reduced recalcitrance and altered lignin structure. This review examines the growing application of phosphitylation followed by 31P NMR to quantitatively analyze biomass lignin structures including guaiacyl, syringyl, guaiacyl with carbon substituents at the C5 position, catechol, p–hydroxyphenyl, aliphatic and carboxylic hydroxyl groups. The application of this methodology to provide a rapid analytical tool for lignin/biomass derived bio-oils and biodiesel precursors is also discussed. Utilizing lignin isolated from native and transgenic plants as well as from pretreatment and biological/thermal deconstruction processes, researchers have demonstrated that this technique has unique characterization capabilities which have broad applicability in the biofuels research community.


Metabolic Engineering | 2008

Cellulase kinetics as a function of cellulose pretreatment

Andreas S. Bommarius; Adrian Katona; Sean E. Cheben; Arpit S. Patel; Arthur J. Ragauskas; Kristina Knudson; Yunqiao Pu

Microcrystalline cellulose (Avicel) was subjected to three different pretreatments (acid, alkaline, and organosolv) before exposure to a mixture of cellulases (Celluclast). Addition of beta-glucosidase, to avoid the well-known inhibition of cellulase by cellobiose, markedly accelerated cellulose hydrolysis up to a ratio of activity units (beta-glucosidase/cellulase) of 20. All pretreatment protocols of Avicel were found to slightly increase its degree of crystallinity in comparison with the untreated control. Adsorption of both cellulase and beta-glucosidase on cellulose is significant and also strongly depends on the wall material of the reactor. The conversion-time behavior of all four states of Avicel was found to be very similar. Jamming of adjacent cellulase enzymes when adsorbed on microcrystalline cellulose surface is evident at higher concentrations of enzyme, beyond 400 U/L cellulase/8 kU/L beta-glucosidase. Jamming explains the observed and well-known dramatically slowing rate of cellulose hydrolysis at high degrees of conversion. In contrast to the enzyme concentration, neither the method of pretreatment nor the presence or absence of presumed fractal kinetics has an effect on the calculated jamming parameter for cellulose hydrolysis.


Biotechnology and Bioengineering | 2014

Investigation of lignin deposition on cellulose during hydrothermal pretreatment, its effect on cellulose hydrolysis, and underlying mechanisms.

Hongjia Li; Yunqiao Pu; Rajeev Kumar; Arthur J. Ragauskas; Charles E. Wyman

In dilute acid pretreatment of lignocellulosic biomass, lignin has been shown to form droplets that deposit on the cellulose surface and retard enzymatic digestion of cellulose (Donohoe et al., 2008; Selig et al., 2007). However, studies of this nature are limited for hydrothermal pretreatment, with the result that the corresponding mechanisms that inhibit cellulosic enzymes are not well understood. In this study, scanning electron microscope (SEM) and wet chemical analysis of solids formed by hydrothermal pretreatment of a mixture of Avicel cellulose and poplar wood showed that lignin droplets from poplar wood relocated onto the Avicel surface. In addition, nuclear magnetic resonance (NMR) showed higher S/G ratios in deposited lignin than the initial lignin in poplar wood. Furthermore, the lignin droplets deposited on Avicel significantly impeded cellulose hydrolysis. A series of tests confirmed that blockage of the cellulose surface by lignin droplets was the main cause of cellulase inhibition. The results give new insights into the fate of lignin in hydrothermal pretreatment and its effects on enzymatic hydrolysis. Biotechnol. Bioeng. 2014;111: 485–492.


Journal of Agricultural and Food Chemistry | 2009

Biomass Characterization of Buddleja davidii: A Potential Feedstock for Biofuel Production

Bassem B. Hallac; Poulomi Sannigrahi; Yunqiao Pu; Michael J. Ray; Richard J. Murphy; Arthur J. Ragauskas

A compositional analysis was performed on Buddleja davidii to determine its general biomass characteristics and provide detailed analysis of the chemical structures of its cellulose and lignin using NMR. B. davidii is a new potential lignocellulosic bioresource for producing bioethanol because it has several attractive agroenergy features. The biomass composition of B. davidii is 30% lignin, 35% cellulose, and 34% hemicellulose. Solid-state CP/MAS (13)C NMR showed that 33% of the cellulose is para-crystalline and 41% is at inaccessible surfaces. Both quantitative (13)C and (31)P NMR were used to examine the structure of lignin. The lignin was determined to be guaiacyl and syringyl with an h:g:s ratio of 0:81:19.


Biotechnology for Biofuels | 2013

Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production

Hui Shen; Charleson R. Poovaiah; Angela Ziebell; Timothy J. Tschaplinski; Sivakumar Pattathil; Erica Gjersing; Nancy L. Engle; Rui Katahira; Yunqiao Pu; Robert W. Sykes; Fang Chen; Arthur J. Ragauskas; Jonathan R. Mielenz; Michael G. Hahn; Mark F. Davis; C. Neal Stewart; Richard A. Dixon

BackgroundLignocellulosic biomass is one of the most promising renewable and clean energy resources to reduce greenhouse gas emissions and dependence on fossil fuels. However, the resistance to accessibility of sugars embedded in plant cell walls (so-called recalcitrance) is a major barrier to economically viable cellulosic ethanol production. A recent report from the US National Academy of Sciences indicated that, “absent technological breakthroughs”, it was unlikely that the US would meet the congressionally mandated renewable fuel standard of 35 billion gallons of ethanol-equivalent biofuels plus 1 billion gallons of biodiesel by 2022. We here describe the properties of switchgrass (Panicum virgatum) biomass that has been genetically engineered to increase the cellulosic ethanol yield by more than 2-fold.ResultsWe have increased the cellulosic ethanol yield from switchgrass by 2.6-fold through overexpression of the transcription factor PvMYB4. This strategy reduces carbon deposition into lignin and phenolic fermentation inhibitors while maintaining the availability of potentially fermentable soluble sugars and pectic polysaccharides. Detailed biomass characterization analyses revealed that the levels and nature of phenolic acids embedded in the cell-wall, the lignin content and polymer size, lignin internal linkage levels, linkages between lignin and xylans/pectins, and levels of wall-bound fucose are all altered in PvMYB4-OX lines. Genetically engineered PvMYB4-OX switchgrass therefore provides a novel system for further understanding cell wall recalcitrance.ConclusionsOur results have demonstrated that overexpression of PvMYB4, a general transcriptional repressor of the phenylpropanoid/lignin biosynthesis pathway, can lead to very high yield ethanol production through dramatic reduction of recalcitrance. MYB4-OX switchgrass is an excellent model system for understanding recalcitrance, and provides new germplasm for developing switchgrass cultivars as biomass feedstocks for biofuel production.


Journal of Biological Chemistry | 2010

Increase in 4-Coumaryl Alcohol Units during Lignification in Alfalfa (Medicago sativa) Alters the Extractability and Molecular Weight of Lignin

Angela Ziebell; Kristen Gracom; Rui Katahira; Fang Chen; Yunqiao Pu; Arthur J. Ragauskas; Richard A. Dixon; Mark F. Davis

The lignin content of biomass can impact the ease and cost of biomass processing. Lignin reduction through breeding and genetic modification therefore has potential to reduce costs in biomass-processing industries (e.g. pulp and paper, forage, and lignocellulosic ethanol). We investigated compositional changes in two low-lignin alfalfa (Medicago sativa) lines with antisense down-regulation of p-coumarate 3-hydroxylase (C3H) or hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase (HCT). We investigated whether the difference in reactivity during lignification of 4-coumaryl alcohol (H) monomers versus the naturally dominant sinapyl alcohol and coniferyl alcohol lignin monomers alters the lignin structure. Sequential base extraction readily reduced the H monomer content of the transgenic lines, leaving a residual lignin greatly enriched in H subunits; the extraction profile highlighted the difference between the control and transgenic lines. Gel permeation chromatography of isolated ball-milled lignin indicated significant changes in the weight average molecular weight distribution of the control versus transgenic lines (CTR1a, 6000; C3H4a, 5500; C3H9a, 4000; and HCT30a, 4000).


Biotechnology for Biofuels | 2012

Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes

Muyang Li; Cliff E. Foster; Shantanu Kelkar; Yunqiao Pu; Daniel Holmes; Arthur J. Ragauskas; Christopher M. Saffron; David B. Hodge

BackgroundFor cellulosic biofuels processes, suitable characterization of the lignin remaining within the cell wall and correlation of quantified properties of lignin to cell wall polysaccharide enzymatic deconstruction is underrepresented in the literature. This is particularly true for grasses which represent a number of promising bioenergy feedstocks where quantification of grass lignins is particularly problematic due to the high fraction of p- hydroxycinnamates. The main focus of this work is to use grasses with a diverse range of lignin properties, and applying multiple lignin characterization platforms, attempt to correlate the differences in these lignin properties to the susceptibility to alkaline hydrogen peroxide (AHP) pretreatment and subsequent enzymatic deconstruction.ResultsWe were able to determine that the enzymatic hydrolysis of cellulose to to glucose (i.e. digestibility) of four grasses with relatively diverse lignin phenotypes could be correlated to total lignin content and the content of p-hydroxycinnamates, while S/G ratios did not appear to contribute to the enzymatic digestibility or delignification. The lignins of the brown midrib corn stovers tested were significantly more condensed than a typical commercial corn stover and a significant finding was that pretreatment with alkaline hydrogen peroxide increases the fraction of lignins involved in condensed linkages from 88–95% to ~99% for all the corn stovers tested, which is much more than has been reported in the literature for other pretreatments. This indicates significant scission of β-O-4 bonds by pretreatment and/or induction of lignin condensation reactions. The S/G ratios in grasses determined by analytical pyrolysis are significantly lower than values obtained using either thioacidolysis or 2DHSQC NMR due to presumed interference by ferulates.ConclusionsIt was found that grass cell wall polysaccharide hydrolysis by cellulolytic enzymes for grasses exhibiting a diversity of lignin structures and compositions could be linked to quantifiable changes in the composition of the cell wall and properties of the lignin including apparent content of the p-hydroxycinnamates while the limitations of S/G estimation in grasses is highlighted.

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Arthur J. Ragauskas

Georgia Institute of Technology

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Mi Li

Oak Ridge National Laboratory

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Chang Geun Yoo

Oak Ridge National Laboratory

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Xianzhi Meng

University of Tennessee

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Fang Huang

Georgia Institute of Technology

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Gerald A. Tuskan

Oak Ridge National Laboratory

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Brian H. Davison

Oak Ridge National Laboratory

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Qining Sun

Georgia Institute of Technology

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