Yuqing Xie

Paenibacillus algorifonticola sp. nov., isolated from a cold spring.

A Gram-stain-positive, endospore-forming, rod-shaped bacterium, designated XJ259(T), was isolated from a cold spring sample from Xinjiang Uyghur Autonomous Region, China. The isolate grew optimally at 20-30 °C and pH 7.3-7.8. Comparative analysis of the 16S rRNA gene sequence showed that isolate XJ259(T) belonged phylogenetically to the genus Paenibacillus, and was most closely related to Paenibacillus xinjiangensis B538(T) (with 96.6 % sequence similarity), Paenibacillus glycanilyticus DS-1(T) (96.3 %) and Paenibacillus castaneae Ch-32(T) (96.1 %), sharing less than 96.0 % sequence similarity with all other members of the genus Paenibacillus. Chemotaxonomic analysis revealing menaquinone-7 (MK-7) as the major isoprenoid quinone, diphosphatidylglycerol, phosphatidylethanolamine and two unknown phosphoglycolipids as the major cellular polar lipids, a DNA G+C content of 47.0 mol%, and anteiso-C₁₅:₀ and C₁₆:₀ as the major fatty acids supported affiliation of the new isolate to the genus Paenibacillus. Based on these data, isolate XJ259(T) is considered to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus algorifonticola sp. nov. is proposed. The type strain is XJ259(T) ( = CGMCC 1.10223(T)  = JCM 16598(T)).

Deinococcus wulumuqiensis sp. nov., and Deinococcus xibeiensis sp. nov., isolated from radiation-polluted soil

The taxonomic positions of two gamma- and UV-ray-resistant strains isolated from radiation-polluted soil in north-west China were determined in a polyphasic study. The organisms, designated R12(T) and R13(T), were Gram-stain-positive, non-spore-forming cocci, which contained MK-8 as the major respiratory quinone and C(16 : 1)omega7c and C(16 : 0) as major fatty acids. The cell walls of strains R12(T) and R13(T) contained ornithine. Phylogenetic analysis based on 16S rRNA gene sequences and DNA-DNA hybridizations showed that strains R12(T) and R13(T) are members of novel species belonging to the genus Deinococcus, with Deinococcus radiodurans DSM 20539(T) as the closest relative. The isolates R12(T) and R13(T) shared 97 and 97.1 % 16S rRNA gene similarity, respectively, and 29.5 and 33.3 % DNA-DNA relatedness, respectively, with D. radiodurans DSM 20539(T). The DNA G+C contents of isolates R12(T) and R13(T) were 66.7 and 63.8 %, respectively. On the basis of phenotypic tests and other results, two species, Deinococcus wulumuqiensis sp. nov. (type strain R12(T) =CGMCC 1.8884(T) =NBRC 105665(T)) and Deinococcus xibeiensis sp. nov. (type strain R13(T) =CGMCC 1.8885(T) =NBRC 105666(T)), are proposed.

Rufibacter roseus sp. nov., isolated from radiation-polluted soil

A rose, Gram-stain-negative, aerobic, rod-shaped bacterium that was motile by gliding, and designated strain H359(T), was isolated from radiation-polluted soil (with high Cs(137)) from the Xinjiang Uygur Autonomous Region of PR China and subjected to a polyphasic taxonomic analysis. The isolate grew optimally at 30 °C and pH 7.0. It grew with NaCl up to 4% (w/v). 16S rRNA gene sequence analysis indicated that strain H359(T) belonged to the genus Rufibacter, a member of the family Cytophagaceae, with Rufibacter tibetensis CCTCC AB 208084(T) as its closest phylogenetic relative, having 96.1% 16S rRNA gene sequence similarity to the type strain. Strain H359(T) contained menaquinone-7 (MK-7) as the predominant menaquinone, and the major fatty acids were iso-C15 : 0, summed feature 4 (iso-C17 : 1 I and/or anteiso-C17 : 1 B), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and C16 : 1ω5c. The polar lipid profile had phosphatidylethanolamine as the major component. The DNA G+C content was 43.9 mol%. Based on phenotypic, genotypic and phylogenetic evidence, strain H359(T) represents a novel species of the genus Rufibacter, for which the name Rufibacter roseus sp. nov. is proposed. The type strain is H359(T) ( =CPCC 100615(T) =KCTC 42217(T)).

The Effects of Radiation Pollution on the Population Diversities and Metabolic Characteristics of Soil Microorganisms

The effects of radiation pollution on the population diversities and metabolic characteristics in soil microorganisms from radiation pollution areas were investigated. Microbial diversities were determined by using methods of cultured isolates and carbon source utilization on Biolog EcoPlate™. The results showed that radiation changed soil microbial community structure and function. With the increasing of radiation pollution, the number of bacteria and actinomycetes declined gradually. Carbon utilizations of microbial community were significant ly different from each other (ρ < 0.05). Microbial activity decreased gradually; Simpson index and McIntosh index increased, but Shannon-Wiener index was not significant different; the major utilized substrates indicated that microbes more tend to use carboxylic acids and polymers as carbon sources, instead of carbohydrates. In conclusion, the community composition of microorganisms as well as population diversity in soils was impacted obviously by radiation pollution.