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Featured researches published by Zeynep Atamer.


International Journal of Food Microbiology | 2013

Characterization of aerobic spore-forming bacteria associated with industrial dairy processing environments and product spoilage

Genia Lücking; Marina Stoeckel; Zeynep Atamer; Jörg Hinrichs; Monika Ehling-Schulz

Due to changes in the design of industrial food processing and increasing international trade, highly thermoresistant spore-forming bacteria are an emerging problem in food production. Minimally processed foods and products with extended shelf life, such as milk products, are at special risk for contamination and subsequent product damages, but information about origin and food quality related properties of highly heat-resistant spore-formers is still limited. Therefore, the aim of this study was to determine the biodiversity, heat resistance, and food quality and safety affecting characteristics of aerobic spore-formers in the dairy sector. Thus, a comprehensive panel of strains (n=467), which originated from dairy processing environments, raw materials and processed foods, was compiled. The set included isolates associated with recent food spoilage cases and product damages as well as isolates not linked to product spoilage. Identification of the isolates by means of Fourier-transform infrared spectroscopy and molecular methods revealed a large biodiversity of spore-formers, especially among the spoilage associated isolates. These could be assigned to 43 species, representing 11 genera, with Bacillus cereus s.l. and Bacillus licheniformis being predominant. A screening for isolates forming thermoresistant spores (TRS, surviving 100°C, 20 min) showed that about one third of the tested spore-formers was heat-resistant, with Bacillus subtilis and Geobacillus stearothermophilus being the prevalent species. Strains producing highly thermoresistant spores (HTRS, surviving 125°C, 30 min) were found among mesophilic as well as among thermophilic species. B. subtilis and Bacillus amyloliquefaciens were dominating the group of mesophilic HTRS, while Bacillus smithii and Geobacillus pallidus were dominating the group of thermophilic HTRS. Analysis of spoilage-related enzymes of the TRS isolates showed that mesophilic strains, belonging to the B. subtilis and B. cereus groups, were strongly proteolytic, whereas thermophilic strains displayed generally a low enzymatic activity and thus spoilage potential. Cytotoxicity was only detected in B. cereus, suggesting that the risk of food poisoning by aerobic, thermoresistant spore-formers outside of the B. cereus group is rather low.


Applied and Environmental Microbiology | 2013

Classification of Lytic Bacteriophages Attacking Dairy Leuconostoc Starter Strains

Yahya Ali; Witold Kot; Zeynep Atamer; Jörg Hinrichs; Finn K. Vogensen; Knut J. Heller; Horst Neve

ABSTRACT A set of 83 lytic dairy bacteriophages (phages) infecting flavor-producing mesophilic starter strains of the Leuconostoc genus was characterized, and the first in-depth taxonomic scheme was established for this phage group. Phages were obtained from different sources, i.e., from dairy samples originating from 11 German dairies (50 Leuconostoc pseudomesenteroides [Ln. pseudomesenteroides] phages, 4 Ln. mesenteroides phages) and from 3 external phage collections (17 Ln. pseudomesenteroides phages, 12 Ln. mesenteroides phages). All phages belonged to the Siphoviridae family of phages with isometric heads (diameter, 55 nm) and noncontractile tails (length, 140 nm). With the exception of one phage (i.e., phage ΦLN25), all Ln. mesenteroides phages lysed the same host strains and revealed characteristic globular baseplate appendages. Phage ΦLN25, with different Y-shaped appendages, had a unique host range. Apart from two phages (i.e., phages P792 and P793), all Ln. pseudomesenteroides phages shared the same host range and had plain baseplates without distinguishable appendages. They were further characterized by the presence or absence of a collar below the phage head or by unique tails with straight striations. Phages P792 and P793 with characteristic fluffy baseplate appendages could propagate only on other specific hosts. All Ln. mesenteroides and all Ln. pseudomesenteroides phages were members of two (host species-specific) distinct genotypes but shared a limited conserved DNA region specifying their structural genes. A PCR detection system was established and was shown to be reliable for the detection of all Leuconostoc phage types.


Frontiers in Microbiology | 2013

Review: elimination of bacteriophages in whey and whey products

Zeynep Atamer; Meike Samtlebe; Horst Neve; Knut J. Heller; Joerg Hinrichs

Asthecheesemarketfacesstronginternationalcompetition,theoptimizationofproductionprocesses becomes more important for the economic success of dairy companies. Indairy productions, whey from former cheese batches is frequently re-used to increasethe yield, to improve the texture and to increase the nutrient value of the final product.Recycling of whey cream and particulated whey proteins is also routinely performed.Most bacteriophages, however, survive pasteurization and may re-enter the cheesemanufacturing process. There is a risk that phages multiply to high numbers during theproduction. Contamination of whey samples with bacteriophages may cause problems incheese factories because whey separation often leads to aerosol-borne phages and thuscontamination of the factory environment. Furthermore, whey cream or whey proteinsused for recycling into cheese matrices may contain thermo-resistant phages. Drainedcheese whey can be contaminated with phages as high as 10


International Journal of Food Microbiology | 2017

Whey powders are a rich source and excellent storage matrix for dairy bacteriophages

Natalia Wagner; Erik Brinks; Meike Samtlebe; Jörg Hinrichs; Zeynep Atamer; Witold Kot; Charles M. A. P. Franz; Horst Neve; Knut J. Heller

Thirteen whey powders and 5 whey powder formulations were screened for the presence of dairy bacteriophages using a representative set of 8 acid-producing Lactococcus lactis and 5 Streptococcus thermophilus, and 8 flavour-producing Leuconostoc pseudomesenteroides and Leuconostoc mesenteroides strains. Lytic L. lactis phages were detected in all samples, while S. thermophilus and Leuconostoc phages were present in 50% or 40% of the samples, respectively. Maximal phage titers were 6×107 plaque-forming units (pfu)/g of whey powder for L. lactis phages, 1×107pfu/g for Leuconostoc phages and 1×105pfu/g for S. thermophilus phages. In total, 55 phages were isolated and characterized. Thirty one of the 33 lactococcal phages tested belonged to the wide-spread 936 phage group. In the course of this study, a PCR detection method for Leuconostoc phages (Ali et al., 2013) was adapted to new phage isolates. Furthermore, a remarkably high stability of phages in whey powder samples was documented during a long-term storage period of 4 years.


International Dairy Journal | 2009

Screening for and characterization of Lactococcus lactis bacteriophages with high thermal resistance

Zeynep Atamer; Jochen Dietrich; Mareile Müller-Merbach; Horst Neve; Knut J. Heller; Jörg Hinrichs


International Dairy Journal | 2011

Thermal resistance of bacteriophages attacking flavour-producing dairy Leuconostoc starter cultures

Zeynep Atamer; Yahya Ali; Horst Neve; Knut J. Heller; Jörg Hinrichs


International Dairy Journal | 2010

Influence of the suspension media on the thermal treatment of mesophilic lactococcal bacteriophages.

Zeynep Atamer; Jochen Dietrich; Horst Neve; Knut J. Heller; Jörg Hinrichs


International Journal of Dairy Technology | 2011

Thermal resistance of aerobic spore formers isolated from food products

Marina Witthuhn; Genia Lücking; Zeynep Atamer; Monika Ehling-Schulz; Jörg Hinrichs


International Dairy Journal | 2010

Thermal inactivation of the heat-resistant Lactococcus lactis bacteriophage P680 in modern cheese processing

Zeynep Atamer; Jörg Hinrichs


International Dairy Journal | 2017

Bovine β-casein: Isolation, properties and functionality. A review

Zeynep Atamer; Antonie E. Post; Thomas Schubert; Aline Holder; R.M. Boom; Jörg Hinrichs

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R.M. Boom

Wageningen University and Research Centre

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Aline Holder

University of Hohenheim

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Monika Ehling-Schulz

University of Veterinary Medicine Vienna

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