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Dive into the research topics where Zhen-Dan Shi is active.

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Featured researches published by Zhen-Dan Shi.


ChemBioChem | 2005

Ring‐Closing Metathesis of C‐Terminal Allylglycine Residues with an N‐Terminal β‐Vinyl‐Substituted Phosphotyrosyl Mimetic as an Approach to Novel Grb2 SH2 Domain‐Binding Macrocycles

Shinya Oishi; Zhen-Dan Shi; Karen M. Worthy; Lakshman Bindu; Robert J. Fisher; Terrence R. Burke

Ring‐closing metathesis (RCM) of peptides often requires insertion of allylglycines at the intended sites of ring juncture, which can result in the displacement of residues that are needed for biological activity. This type of side‐chain deletion can be avoided by appending β‐vinyl substituents onto the parent residues at the intended sites of ring juncture, thereby effectively converting them into functionalized allylglycine equivalents. Such an approach has been previously applied in modified form to growth‐factor receptor bound 2 (Grb2) SH2 domain‐binding peptides by using an N‐terminal β‐vinyl‐functionalized phosphotyrosyl mimetic and C‐terminal 2‐allyl‐3‐aryl‐1‐propanamides that lacked the α‐carboxyl portion of allylglycine residues. These C‐terminal moieties involved lengthy synthesis and once prepared, required an individual total synthesis of each final macrocycle. Work reported herein significantly enhances the versatility of the original approach through the use of C‐terminal allylglycine amides that can be prepared from commercially available L‐ and D‐allylglycines and suitable amines. This methodology could be generally useful where macrocylization is desired with maintenance of functionality at a site of ring juncture.


Archive | 2006

Application of Phenylphosphate Mimetics to the Design and Synthesis of Olefin Metathesis-Derived Grb2 SH2 Domain-Binding Macrocycles

Sang-Uk Kang; Zhen-Dan Shi; Rajeshri Kariki; Jason Phan; Karen M. Worthy; Lakshman Bindu; Marc C. Nicklaus; David S. Waugh; Robert J. Fisher; Terrence R. Burke

Introduction The growth factor receptor bound protein 2 (Grb2) is an SH2 domain-containing component of signaling pathways associated with a variety of proliferative diseases. Grb2 SH2 domains preferentially recognize sequences of the form, “pTyr-Xxx-Asn”, with binding occurring in type-I β-bend conformations [1]. Significant research has been devoted to developing Grb2 SH2 domain-binding peptides and peptide mimetics as potential therapeutics. One aspect of these efforts has been directed toward overcoming bioavailability issues raised by the dianionic phenylphosphate moiety of pTyr. Using an open-chain display platform based on the peptide AcpTyr-Ac6c-Asn-[3-(1-naphthyl)propylamide] reported by Novartis Corp [2], we had previously examined a number of monoanionic phosphoryl mimetics that exhibited micromolar to sub-micromolar Grb2 SH2 domain-binding affinities [3]. More recently, we reported macrocyclic variants of the Novartis peptide bearing dianionic phosphoryl replacements that provide low nanomolar to sub-nanomolar binding constants (analogs 1 [4] and 2 [5], X = a and b, Fig. 1). The focus of the current study was to examine phosphoryl mimicking groups bearing monoanionic charge (X = c,d,e and f) or no charge (X = g and h) within a macrocyclic platform (Fig. 1).


Bioorganic & Medicinal Chemistry Letters | 2006

Application of Azide-Alkyne Cycloaddition “Click Chemistry” for the Synthesis of Grb2 SH2 Domain-Binding Macrocycles

Won Jun Choi; Zhen-Dan Shi; Karen M. Worthy; Lakshman Bindu; Rajeshri G. Karki; Marc C. Nicklaus; Robert J. Fisher; Terrence R. Burke


Journal of Medicinal Chemistry | 2004

Synthesis of a 5-methylindolyl-containing macrocycle that displays ultrapotent Grb2 SH2 domain-binding affinity.

Zhen-Dan Shi; Kyeong Lee; Chang-Qing Wei; Lindsey R. Roberts; Karen M. Worthy; Robert J. Fisher; Terrence R. Burke


Journal of Medicinal Chemistry | 2005

Examination of phosphoryl-mimicking functionalities within a macrocyclic Grb2 SH2 domain-binding platform.

Sang-Uk Kang; Zhen-Dan Shi; Karen M. Worthy; Lakshman Bindu; Pathirage G. Dharmawardana; Sarah J. Choyke; Donald P. Bottaro; Robert J. Fisher; Terrence R. Burke


Bioorganic & Medicinal Chemistry | 2005

Evaluation of macrocyclic Grb2 SH2 domain-binding peptide mimetics prepared by ring-closing metathesis of C-terminal allylglycines with an N-terminal β-vinyl-substituted phosphotyrosyl mimetic

Shinya Oishi; Rajeshri G. Karki; Zhen-Dan Shi; Karen M. Worthy; Lakshman Bindu; Oleg Chertov; Dominic Esposito; Peter Frank; William K. Gillette; Melissa Maderia; James L. Hartley; Marc C. Nicklaus; Joseph J. Barchi; Robert J. Fisher; Terrence R. Burke


Journal of Molecular Biology | 2005

Crystal Structures of a High-affinity Macrocyclic Peptide Mimetic in Complex with the Grb2 SH2 Domain.

Jason Phan; Zhen-Dan Shi; Terrence R. Burke; David S. Waugh


Bioorganic & Medicinal Chemistry Letters | 2005

Utilization of a nitrobenzoxadiazole (NBD) fluorophore in the design of a Grb2 SH2 domain-binding peptide mimetic

Zhen-Dan Shi; Rajeshri G. Karki; Shinya Oishi; Karen M. Worthy; Lakshman Bindu; Pathirage G. Dharmawardana; Marc C. Nicklaus; Donald P. Bottaro; Robert J. Fisher; Terrence R. Burke


Chemistry & Biodiversity | 2005

Utilization of a common pathway for the synthesis of high affinity macrocyclic Grb2 SH2 domain-binding peptide mimetics that differ in the configuration at one ring junction.

Zhen-Dan Shi; Rajeshri G. Karki; Karen M. Worthy; Lakshman Bindu; Marc C. Nicklaus; Robert J. Fisher; Terrence R. Burke


Archive | 2009

Compositions and methods for inhibition of hepatocyte growth factor receptor c-Met signaling

Donald P. Bottaro; Megan L. Peach; Marc C. Nicklaus; Terrence R. Burke; Gagani Athauda; Sarah J. Choyke; Alessio Giubellino; Nelly Tan; Zhen-Dan Shi

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Terrence R. Burke

National Institutes of Health

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Karen M. Worthy

Science Applications International Corporation

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Robert J. Fisher

Science Applications International Corporation

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Lakshman Bindu

Science Applications International Corporation

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Marc C. Nicklaus

National Institutes of Health

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Rajeshri G. Karki

National Institutes of Health

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Donald P. Bottaro

National Institutes of Health

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David S. Waugh

National Institutes of Health

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