Zhi Qi

Arabidopsis plasma membrane protein crucial for Ca2+ influx and touch sensing in roots

Plants can sense and respond to mechanical stimuli, like animals. An early mechanism of mechanosensing and response is speculated to be governed by as-yet-unidentified sensory complexes containing a Ca2+-permeable, stretch-activated (SA) channel. However, the components or regulators of such complexes are poorly understood at the molecular level in plants. Here, we report the molecular identification of a plasma membrane protein (designated Mca1) that correlates Ca2+ influx with mechanosensing in Arabidopsis thaliana. MCA1 cDNA was cloned by the functional complementation of lethality of a yeast mid1 mutant lacking a putative Ca2+-permeable SA channel component. Mca1 was localized to the yeast plasma membrane as an integral membrane protein and mediated Ca2+ influx. Mca1 also increased [Ca2+]cyt upon plasma membrane distortion in Arabidopsis. The growth of MCA1-overexpressing plants was impaired in a high-calcium but not a low-calcium medium. The primary roots of mca1-null plants failed to penetrate a harder agar medium from a softer one. These observations demonstrate that Mca1 plays a crucial role in a Ca2+-permeable SA channel system that leads to mechanosensing in Arabidopsis. We anticipate our findings to be a starting point for a deeper understanding of the molecular mechanisms of mechanotransduction in plants.

Activation of a mechanosensitive BK channel by membrane stress created with amphipaths.

Some BK channels are activated in response to membrane stretch. However, it remains largely unknown which membrane component transmits forces to the channel and which part of the channel senses the force. Recently, we have shown that a BK channel cloned from chick heart (named SAKCa channel) is a stretch activated channel, while deletion of a 59 amino acids splice insert (STREX) located in the cytoplasmic side, abolishes its stretch-sensitivity. This finding raised a question whether stress in the bilayer is crucial for the mechanical activation of the channel. To address this question we examined the effects of membrane perturbing amphipaths on the stretch activation of the SAKCa channel and its STREX-deletion mutant. We found that both anionic amphipath trinitrophenol (TNP) and cationic amphipath chlorpromazine (CPZ) could dose-dependently activate the channel by leftward shifting the voltage activation curve when applied alone. In contrast, TNP and CPZ compensated each others effect when applied sequentially. These results can be understood in the framework of the bilayer couple hypothesis, suggesting that stress in the plasma membrane can activate the SAKCa channel. Interestingly, the STREX-deletion mutant channel has much less sensitivity to the amphipaths, suggesting that STREX acts as an intermediate structure that can indirectly convey stress in the membrane to the gate of the SAKCa channel via an unidentified membrane associated protein(s) that can detect or transmit stress in the membrane.

Characterization of a Functionally Expressed Stretch-activated BKca Channel Cloned from Chick Ventricular Myocytes

We have characterized electrophysiological and pharmacological properties of a stretch-activated BKca channel (SAKcaC) that was cloned from cultured chick ventricular myocytes (CCVM) and expressed in chinese hamster ovary cells (CHO) using the patch-clamp technique. Our results indicate that the cloned SAKcaC keeps most of the key properties of the native SAKcaC in CCVM, such as conductance, ion selectivity, pressure-, voltage- and Ca2+-dependencies. However, there was a slight difference between these channels in the effects of channel blockers, charybdotoxin (CTX) and gadolinium (Gd3+). The native SAKcaC was blocked in an all-or-none fashion characterized as the slow blockade, whereas the conductance of the cloned SAKcaC was gradually decreased with the blockers’ concentration, without noticeable blocking noise. As the involvement of some auxiliary components was suspected in this difference, we cloned a BK β-subunit from CCVM and coexpressed it with the cloned SAKcaC in CHO cells to examine its effects on the SAKcaC. Although the pharmacological properties of the cloned SAKcaC turned out to be very similar to the native one by the coexpression, it also significantly altered the key characteristics of SAKcaC, such as voltage- and Ca2+-dependencies. Therefore we concluded that the native SAKca in CCVM does not interact with the corresponding endogenous β-subunit. The difference in pharmacological properties between the expressed SAKcaC in CHO and the native one in CCVM suggests that the native SAKca in CCVM is modulated by unknown auxiliary components.

Accelerated diffusion of Na+ in a hydrophobic region revealed by molecular dynamics simulations of a synthetic ion channel

To get insight into the significance of the hydrophobic lining on the ion permeation, we performed molecular dynamics simulations on a Na(+) permeation through a de novo synthetic hydrophobic channel. Electrophysiological study has suggested that the channel is formed from a tail-to-tail associated dimer of a cyclic octa-peptide coupled with hydrophobic acyl chains. The acyl chains line the channel pore while the cyclic peptide forms the channel entrance [Z. Qi, M. Sokabe, K. Donowaki, H. Ishida, Biophys. J. 76 (1999) 631]. Molecular dynamics simulation of water in the channel indicated that the inferred structure is physically reasonable [Z. Qi, M. Sokabe, Biophys. Chem. 71 (1998) 35]. In the present study, the potential energy profile of the Na(+) and the energy contributions from each component of the system at different positions along the channel axis were calculated. An energy well instead of a peak is located at the central hydrophobic cavity of the channel, due to its ability of accommodating at least five water molecules to hydrate the ion. Interestingly, the ion diffuses much faster in the hydrophobic acyl chain region, particularly in the central hydrophobic cavity, than it does in the peptide ring region and even surprisingly faster than that in the bulk phase. These results provide a physical basis for an idea that the hydrophobic lining of the K(+) channel [D.A. Doyle, J.M. Cabral, R.A. Pfuetzner, A. Kuo, J.M. Gulbis, S.L. Cohen, B.T. Chait, R. MacKinnon, Science 280 (1998) 69] plays an active role to facilitate the ion permeation through the channel pore.

Molecular design of cyclic peptides containing a non-natural amino acid: novel synthetic approach to artificial ion channels

Interested in the structure-function relationship of natural and synthetic peptides, we have designed, synthesized, and evaluated a series of functional peptides containing rigid non-natural amino acid moiety(ies) such as 3-aminobenzoic acid [1]. The resulting functional peptides are restricted conformationally and, if cyclic, are expected to form a central cavity. Indeed, we have recently shown that the cyclic peptides (1–4) with long acyl chains are smoothly incorporated into a bilayer membrane and function as single ion channels [2], The same synthetic strategy, though applicable to the preparation of cyclic peptides consist of different amino acid moieties with similar side chains, cannot be extended to the syntheses of more sophisticated cyclic peptides carrying, for example, peptide side chains. We wish now to propose an advanced, more versatile methodology for preparing a wide variety of functional cyclic peptides. Using this synthetic strategy, we actually synthesized two cyclic peptides (5 and 6 ) carrying cholate groups or long peptide chains, which are expected to exhibit some novel ionchannel properties upon incorporation into a membrane.