Zhongsheng Wang

Potential Challenges of Climate Change to Orchid Conservation in a Wild Orchid Hotspot in Southwestern China

Southwestern China including Guangxi Province is one of nine world hotspots for orchid. Warming in the region in the past century was around 0.5°C, slightly lower than the global average of 0.7°C, while rainfall has remained the same. It is projected that the warming trend will continue for the next two centuries, while precipitation will increase slightly, and soil moisture level will decrease. We identify a number of threats due to climate changes to orchid community in the Yachang Orchid Nature Reserve in Guangxi (hereafter refer to as Yachang Reserve), a good representative of the region. Firstly, decreased soil moisture is likely to have a negative effect on growth and survival of orchids, especially terrestrial and saprophytic ones. Sixty eight (50%) orchid species in the Yachang Reserve are in this category. Secondly, the greater majority of the orchids in Yachang Reserve (72%) have populations on or close to the limestone mountain tops. These populations are likely to shrink or even become extinct as the warming continues because they have no higher places to which they are able to migrate. Natural poleward migration is unlikely for these populations because of the complex terrain, small size of the reserve and human-dominated surroundings. Species with narrow distributions (14%) and/or small population sizes (46%) will be the most vulnerable. In addition, populations represent the southern limit of the species (24%) are also prone to local extinction. Thirdly, extreme rainfall events are projected to occur more frequently, which can exacerbate erosion. This may impact orchid populations that grow on steep cliffs. Fifty seven species (42%) of the orchids in Yachang have cliff populations. Fourthly, the majority of orchid species have specialized insect pollination systems. It is unknown whether the change or lack of change in plant phenology will be in synchrony with the potential phenological shifts of their pollinators. Fifty four (40%) orchid species in Yachang Reserve flower in the spring and are potentially subject to this threat. Finally, mycorrhizal fungi are vital for seed germination for all orchids and important for post-seedling growth for some species. Yet there is a lack of knowledge of the nature of mycorrhiza on all orchids in the region, and little is known on the responses of these vital symbiotic relationships to temperature and soil moisture. Overall, 15% of the orchid species and a quarter of the genera bear high risk of population reduction or local extinction under the current projection of climate change. While studies on predicting and documenting the consequences of climate change on biodiversity are increasing, few identified the actual mechanisms through which climate change will affect individual species. Our study provides a unique perspective by identifying specific threats to a plant community.

Seed plant endemism on Hainan Island: a framework for conservation actions.

Hainan, the second largest island of China, has the most extensive and best preserved tropical forests of this country. A network of 68 protected areas (54 of them are terrestrial) provides in situ conservation for the unique ecosystems of the island. We: (1) discuss an updated check-list of seed-plant species that are endemic to Hainan, (2) evaluate the extent to which the endemic flora has been the subject of molecular studies, and (3) investigate the conservation status of these species. We recognize 397 endemic species on the island, 271 of which are reported in the protected areas, and 144 of which have been Red-Listed (85 assigned to the Critically Endangered (40) or Endangered (45) IUCN categories). The families with the highest number of endemics are Rubiaceae (33 species), Lauraceae (27 species), and Poaceae (26 species). The island has only seven endemic genera, all of which are unispecific. Compared with other tropical islands, Hainan has a low number of endemics but our preliminary observations suggest that the island has a highly disharmonic flora when compared with that from the mainland. Nevertheless, most of the major clades of the seed-plant tree of life with representatives in China also have endemic species on the island. We argue that the low levels of endemism reflect the continental nature of Hainan and the fact that several areas of the island have not been fully inventoried. We were unable to find a single molecular systematic study focusing exclusively on the Hainan endemics; however, 24 of the endemic species have been included in phylogenetic studies targeting particular genera or families. Future research/conservation actions for the endemic flora of Hainan should focus in developing: (1) a red-list that assesses all 397 endemic species, (2) comprehensive floristic studies for the protected areas, (3) molecular phylogenetic and conservation genetic studies with a primary focus on the endemics, (4) studies to understand what ecological interactions are important in the biology of the endemic species, and (5) eco-geographical studies to identify Important Biodiversity Zones of endemism within Hainan and therefore potential new protected areas.

Genetic structure and habitat selection of the tall form Spartina alterniflora Loisel. in China

Spartina alterniflora Loisel., a highly invasive species on the Chinese coast, is a focus of increasing management concerns due to its high expansion rate in tideland and the significant damages on native ecosystems, since its introduction into China in 1979. There are both tall and dwarf forms of the species in China. The tall form with strongly invasive ability has widely expanded. Genetic variation was examined within and among three tall form S. alterniflora populations in Jiangsu Province using amplified fragment length polymorphisms (AFLP) markers. Three populations were sampled along the coastal line, and each population was divided into three subpopulations relating with the three microenvironments: Foreland, mid-marsh and upland. Genetic diversity was low at both the population level (PPB = 22%, HE = 0. 0657 and Hpop = 0.099) and at the species level (PPB = 24.65%, HT = 0.0814 and Hsp = 0.1225). A low level of genetic differentiation among populations was detected based on analyses of coefficients of genetic differentiation (9.51%), Shannon’s diversity index (9.48%) and AMOVA (10.69%). The mean value of Gst among nine subpopulations was 22.02%. Habitat selections may occur and affect the genetic structure of S. alterniflora in the process of its spread because there are 7.2, 3.4 and 5.9% specific bands out of 158 polymorphic bands in foreland, mid-marsh, and upland, respectively. This genetic differentiation may result from seedling survival and colonization success based on the selection of specialized microhabitats. The results indicated that high capability of genetic differentiation within populations and strong adaptability of tall form S. alterniflora may be the reasons for the widespread expansion of the tall form S. alterniflora.

Endemic Seed Plant Species from Hainan Island: A Checklist

Global conservation of plant biodiversity on tropical islands is a major priority, as approximately one third of all endangered plant species are insular endemics. Checklists can be an important first step in determining conservation priorities on islands. Hainan, the largest island in the Indo-Burma Biodiversity Hotspot, and therefore an international focus for conservation, has the most extensive and best preserved tropical forests in China. In this study we enumerate the endemic seed plants of Hainan Island. The checklist was prepared by consulting: (1) several bibliographic/taxonomic data base resources, (2) relevant taxonomic treatments and floras, and (3) plant taxonomists who are actively working with Chinese plants. The checklist also contains information concerning conservation status, the occurrence of Hainan endemics in four protected areas on the island, and available molecular phylogenies. An additional checklist of the species that were until recently thought to be endemic to Hainan, but are no longer considered to be, is also presented. In a separate paper in this issue of Botanical Review the patterns of endemism on Hainan Island are discussed.

Effect of Yangtze River on population genetic structure of the relict plant Parrotia subaequalis in eastern China

Abstract Parrotia subaequalis (Hamamelidaceae) is a Tertiary relic species endemic in eastern China. We used inter‐simple sequence repeat (ISSR) markers to access genetic diversity and population genetic structure in natural five populations of P. subaequalis. The levels of genetic diversity were higher at species level (H = 0.2031) but lower at population level (H = 0.1096). The higher genetic diversity at species levels might be attributed to the accumulation of distinctive genotypes which adapted to the different habitats after Quaternary glaciations. Meanwhile, founder effects on the early stage, and subsequent bottleneck of population regeneration due to its biological characteristics, environmental features, and human activities, seemed to explain the low population levels of genetic diversity. The hierarchical AMOVA revealed high levels (42.60%) of among‐population genetic differentiation, which was in congruence with the high levels of Neis genetic differentiation index (GST = 0.4629) and limited gene flow (N m = 0.5801) among the studied populations. Mantel test showed a significant isolation‐by‐distance, indicating that geographic isolation has a significant effect on genetic structure in this species. Unweighted pair‐group method with arithmetic average clustering, PCoA, and Bayesian analyses uniformly recovered groups that matched the geographical distribution of this species. In particular, our results suggest that Yangtze River has served as a natural barrier to gene flow between populations occurred on both riversides. Concerning the management of P. subaequalis, the high genetic differentiation among populations indicates that preserving all five natural populations in situ and collecting enough individuals from these populations for ex situ conservation are necessary.

Development and characterization of polymorphic microsatellite markers (SSRs) for an endemic plant, Pseudolarix amabilis (Nelson) Rehd. (Pinaceae).

Pseudolarix (Pinaceae) is a vulnerable (sensu IUCN) monotypic genus restricted to southeastern China. To better understand levels of genetic diversity, population structure and gene flow among populations of P. amabilis, we developed five compound SSR markers and ten novel polymorphic expressed sequence tags (EST) derived microsatellites. The results showed that all 15 loci were polymorphic with the number of alleles per locus ranging from two to seven. The expected and observed heterozygosities varied from 0.169 to 0.752, and 0.000 to 1.000, respectively. The inbreeding coefficient ranged from −0.833 to 1.000. These markers will contribute to research on genetic diversity and population genetic structure of P. amabilis, which in turn will contribute to the species conservation.

Modulated photoreflectance characterization of ion-implanted semiconductor wafers

Modulated PhotoReflectance (MPR) measurements on semiconductor wafers implanted with boron or silicon ions in the dose range 5×1010–5×1015 ions/cm2 are presented. Correspondingly, a one-dimensional theoretical multilayer model is established. In the theory, as the implant dose is lower than a critical value, the variation of the MPR signal is contributed mainly by the implanted defects and damages. However, when the dose is above the critical dose, the change of the MPR signal is chiefly due to the formation and growth of an amorphous layer. The theoretical results are in good agreement with those of experiments.

Development and Application of Genomic Resources in an Endangered Palaeoendemic Tree, Parrotia subaequalis (Hamamelidaceae) From Eastern China

Parrotia subaequalis is an endangered palaeoendemic tree from disjunct montane sites in eastern China. Due to the lack of effective genomic resources, the genetic diversity and population structure of this endangered species are not clearly understood. In this study, we conducted paired-end shotgun sequencing (2 × 125 bp) of genomic DNA for two individuals of P. subaequalis on the Illumina HiSeq platform. Based on the resulting sequences, we have successfully assembled the complete chloroplast genome of P. subaequalis, as well as identified the polymorphic chloroplast microsatellites (cpSSRs), nuclear microsatellites (nSSRs) and mutational hotspots of chloroplast. Ten polymorphic cpSSR loci and 12 polymorphic nSSR loci were used to genotype 96 individuals of P. subaequalis from six populations to estimate genetic diversity and population structure. Our results revealed that P. subaequalis exhibited abundant genetic diversity (e.g., cpSSRs: Hcp = 0.862; nSSRs: HT = 0.559) and high genetic differentiation (e.g., cpSSRs: RST = 0.652; nSSRs: RST = 0.331), and characterized by a low pollen-to-seed migration ratio (r ≈ 1.78). These genetic patterns are attributable to its long evolutionary histories and low levels of contemporary inter-population gene flow by pollen and seed. In addition, lack of isolation-by-distance pattern and strong population genetic structuring in both marker systems, suggests that long-term isolation and/or habitat fragmentation as well as genetic drift may have also contributed to the geographic differentiation of P. subaequalis. Therefore, long-term habitat protection is the most important methods to prevent further loss of genetic variation and a decrease in effective population size. Furthermore, both cpSSRs and nSSRs revealed that P. subaequalis populations consisted of three genetic clusters, which should be considered as separated conservation units.

Microsatellite markers for the critically endangered elm species Ulmus gaussenii (Ulmaceae)

The Anhui elm Ulmus gaussenii is listed as a critically endangered species by the International Union for Conservation of Nature and is endemic to China, where its only population is restricted to Langya Mountain in Chuzhou, Anhui Province. To better understand the population genetics of U. gaussenii, we developed 12 microsatellite markers using an improved technique. The 12 markers were polymorphic, with the number of alleles per locus ranging from two to nine. Observed and expected heterozygosities ranged from 0.021 to 0.750 and 0.225 to 0.744, respectively. The inbreeding coefficient ranged from -0.157 to 0.960. Significant linkage disequilibrium was detected for two pairs of loci, and significant deviations from Hardy-Weinberg equilibrium were found in nine loci. These microsatellite markers will contribute to the studies of population genetics in U. gaussenii, which in turn will contribute to species conservation and protection.

Differential Effects of Lichens versus Liverworts Epiphylls on Host Leaf Traits in the Tropical Montane Rainforest, Hainan Island, China

Epiphylls widely colonize vascular leaves in moist tropical forests. Understanding the effects of epiphylls on leaf traits of host plants is critical for understanding ecological function of epiphylls. A study was conducted in a rain forest to investigate leaf traits of the host plants Photinia prunifolia colonized with epiphyllous liverworts and foliicolous lichens as well as those of uncolonized leaves. Our results found that the colonization of lichens significantly decreased leaf water content (LWC), chlorophyll (Chl) a and a + b content, and Chl a/b of P. prunifolia but increased Chl b content, while that of liverworts did not affect them as a whole. The variations of net photosynthetic rates (P n) among host leaves colonized with different coverage of lichens before or after removal treatment (a treatment to remove epiphylls from leaf surface) were greater than that colonized with liverworts. The full cover of lichens induced an increase of light compensation point (LCP) by 21% and a decrease of light saturation point (LSP) by 54% for their host leaves, whereas that of liverworts displayed contrary effects. Compared with the colonization of liverworts, lichens exhibited more negative effects on the leaf traits of P. prunifolia in different stages of colonization. The results suggest that the responses of host leaf traits to epiphylls are affected by the epiphyllous groups and coverage, which are also crucial factors in assessing ecofunctions of epiphylls in tropical forests.