Zhongyu Mou

Evidence of σ- and π-dimerization in a series of phenalenyls.

Phenalenyl and a wide variety of its derivatives form stable radicals, which often associate in various aggregates with interesting properties that include magnetism and high electrical conductivity. The two main modes of aggregation involve π-stacking pancake multicenter bond formation and σ-bond formation. We explore the energetics of the various σ- and π-dimers for six phenalenyl derivatives with both computational and experimental methods. A modern density functional theory (M05-2X) is used to survey the potential energy surface revealing the mechanism of the aggregation. In order to enrich experimental data, the triphenyl and trimethyl derivatives are newly prepared and their aggregation behaviors are investigated by various analytical methods including ESR, (1)H NMR, UV-vis, and single-crystal X-ray diffraction. The agreement between computations and experiments are very good forming the basis of describing trends in this series. We find that π-dimer formation can proceed via an asynchronous concerted path from the monomers or in a stepwise process via σ-dimers. The strength of the π-stacking pancake interaction depends strongly on substituents and covers a wide range both in terms of binding energies and contact distances. The spin densities in the π-stacking dimers reflect these trends and display a wide range of diradicaloid characters. Many σ-dimer configurations compete some of which are separated by small barriers leading to fluxional structures between σ-bonded configurations or σ- and π-bonded configurations.

Fluxional σ-Bonds of the 2,5,8-Trimethylphenalenyl Dimer: Direct Observation of the Sixfold σ-Bond Shift via a π-Dimer

Direct evidence for σ-bond fluxionality in a phenalenyl σ-dimer was successfully obtained by a detailed investigation of the solution-state dynamics of 2,5,8-trimethylphenalenyl (TMPLY) using both experimental and theoretical approaches. TMPLY formed three diamagnetic dimers, namely, the σ-dimer (RR/SS), σ-dimer (RS), and π-dimer, which were fully characterized by (1)H NMR spectroscopy and electronic absorption measurements. The experimental findings gave the first quantitative insights into the essential preference of these competitive and unusual dimerization modes. The spectroscopic analyses suggested that the σ-dimer (RR/SS) is the most stable in terms of energy, whereas the others are metastable; the energy differences between these three isomers are less than 1 kcal mol(-1). Furthermore, the intriguing dynamics of the TMPLY dimers in the solution state were fully revealed by means of (1)H-(1)H exchange spectroscopy (EXSY) measurements and variable-temperature (1)H NMR studies. Surprisingly, the σ-dimer (RR/SS) demonstrated a sixfold σ-bond shift between the six sets of α-carbon pairs. This unusual σ-bond fluxionality is ascribed to the presence of a direct interconversion pathway between the σ-dimer (RR/SS) and the π-dimer, which was unambiguously corroborated by the EXSY measurements. The proposed mechanism of the sixfold σ-bond shift based on the experimental findings was well-supported by theoretical calculations.

Hetero‐π‐Dimers of Phenalenyls

Homogeneous π-stacking dimers of phenalenyl and its derivatives have gained tremendous interest as components of conducting organic materials. For the first time, we investigate theoretically heterogeneous phenalenyl π-dimers. Key parameters, including charge transfer, interaction energy, singly occupied molecular orbital (SOMO) energy, and spin density, are studied with the help of density functional theory. We find that the amount of charge transfer between the two monomers in phenalenyl π-dimers correlates with the difference in the SOMO energies of the constituent monomers, where the SOMO energy plays the role of a monomer (group) electronegativity index. Charge transfer plays an important role in stabilizing the heterodimers while maintaining a significant diradicaloid character. For five heterodimers the interaction energy is found to be as large as -30 to -50 kcal mol(-1) . The presented correlation between the monomer SOMO energy levels and their stability can provide a simple predictive tool to design new highly stable π-stacking heterodimers.

Cethrene: The Chameleon of Woodward–Hoffmann Rules

We demonstrate that the electrocyclic (EC) ring-closure of cethrene in solution proceeds in a conrotatory mode both thermally and photochemically. The facile photochemical EC process promises that cethrene can serve as an efficient chiroptical switch operated solely by light. As for the thermally activated EC reaction, a low reaction barrier and a solvation effect on the EC rate indicate that the C2-symmetric pathway predicted by DFT calculations might not be the correct mechanism. Instead, we argue that the molecular symmetry decreases along the reaction coordinate as a consequence of the low-energy singlet excited state in this diradicaloid molecule, which might lead to a lower activation energy in accord with that determined through kinetic studies. Cethrene, therefore, represents a thought-provoking molecular chameleon of the Woodward-Hoffmann rules that puts our chemical concepts and intuition to test.

Probing semiconductivity in crystals of stable semiquinone radicals: organic salts of 5,6-dichloro-2,3-dicyanosemiquinone (DDQ) radical anions

The structural parameters and semiconductivity of crystals with stacked 5,6-dichloro-2,3-dicyanosemiquinone (DDQ) radicals were studied for a series of the first nine salts of DDQ with substituted N-ethyl- and N-methylpyridinium cations. Structures with stacks of equidistant radicals (interplanar separation 3.4 A between the dimers) are insulators. DFT calculations indicate the covalent character (pancake bonding) of the interactions between the DDQ radical anions. The inductive effects of electronegative substituents (halogeno and cyano) on the quinoid ring stabilise the radicals, but also increase the HOMO–LUMO gap, resulting in lower electrical conductivity.

Sigma- versus Pi-Dimerization Modes of Triangulene

We show that the diradicaloid triangulene, a graphene nano-flake molecule, can aggregate in a variety of dimerization modes. We found by density functional theory modeling a number of triangulene dimers including six doubly bonded σ-dimers in addition to the previously reported six pancake bonded π-dimer isomers. The σ-dimers display a wide range of stabilities: the interaction energy of the most stable σ-dimer is -25.17 kcal mol-1 . Besides the doubly bonded σ-dimers with closed shell ground states, we also found an open-shell singly σ-bonded diradicaloid dimer. We found an interesting isomerization route between a doubly bonded σ-dimer, a singly bonded σ-dimer with a low-lying triplet state and two π-bonded dimers with low-lying quintet states. Derivatives of triangulene, trioxo-triangulenes (TOTs) have been previously characterized experimentally. Here, we show the reasons why so far only the π-dimer but not the σ-dimer was experimentally observed for all TOTs.