Zuzana Ferencova

Remototrachyna, a newly recognized tropical lineage of lichens in the Hypotrachyna clade (Parmeliaceae, Ascomycota), originated in the Indian subcontinent

Biogeographical studies of lichens used to be complicated because of the large distribution ranges of many species. Molecular systematics has revitalized lichen biogeography by improving species delimitation and providing better information about species range limitations. This study focuses on the major clade of tropical parmelioid lichens, which share a chemical feature, the presence of isolichenan in the cell wall, and a morphological feature, microscopic pores in the uppermost layer. Our previous phylogenetic studies revealed that the largest genus in this clade, Hypotrachyna, is polyphyletic with a clade mainly distributed in South and East Asia clustering distant from the core of the genus. To divide the Hypotrachyna clade into monophyletic groups and to reevaluate morphological and chemical characters in a phylogenetic context, we sampled ITS, nuclear large subunit (nuLSU) and mitochondrial small subunit (mtSSU) rDNA sequences from 77 species. We are erecting the new genus Remototrachyna for a core group of 15 former Hypotrachyna species. The segregation of Remototrachyna from Hypotrachyna receives support from morphological and chemical data, as well from maximum parsimony, maximum likelihood, and Bayesian phylogenetic analyses of the DNA. We used a likelihood approach to study the geographic range evolution of Remototrachyna and Bulbothrix, which are sister groups. This analysis suggests that the ancestral range of Remototrachyna was restricted to India and that subsequent long-distance dispersal is responsible for the pantropical occurrence of two species of Remototrachyna.

Austroparmelina, a new Australasian lineage in parmelioid lichens (Parmeliaceae, Ascomycota)

Parmelioid lichens form the largest monophyletic group within the Parmeliaceae, a family distributed worldwide. The genus Parmelina was described by Hale (1976a) accommodating species from both hemispheres. We have employed parsimony, Bayesian and maximum likelihood analyses of a combined data set of nu ITS, LSU and mt SSU rDNA sequences to (1) test the monophyly of Parmelina and (2) to elucidate the generic status and phylogenetic position of the Australasian species. Twenty-one new sequences were generated in this study. Our results provide evidence that Parmelina is polyphyletic and the species fall into two major well-supported groups (Groups I and II). The Australasian species of Parmelina and two species of Canoparmelia (C. pruinata and C. macrospora) form Group I, which is nested within the parmotremoid genera of Parmeliaceae, Parmelina species from the northern hemisphere including those from western North America and the Mediterranean basin form a monophyletic group (Group II), which is sister to the East Asian temperate genus Myelochroa. Morphological and chemical features were reevaluated considering this observed phylogeny. Some morphological features like lobe morphology, several traits in the excipulum and geography are useful in characterizing the monophyletic lineage of the Australasian Parmelina/Canoparmelina species. This lineage is described as the new genus Austroparmelina. Thirteen new combinations in the new genus are proposed.

Coscinocladium, an overlooked endemic and monotypic Mediterranean lichen genus of Physciaceae, reinstated by molecular phylogenetic analysis

The position of the sterile western Mediterranean crustose-placodioid lichen generally known as Lecanora lisbonenesis has been investigated using mitochondrial SSU rDNA sequence data. It proves to belong to an independent genus of Physciaceae, for which the generic name Coscinocladium is available, and the earliest species name is Variolaria gaditana. Previous reports of apothecia in the species prove to be a result of mixtures with other lichen species. A lectotype is selected for L. lisbonensis, a neotype designated for V. gaditana, and the new combination Coscinocladium gaditanum made. The species is described, illustrated, its ecology discussed, and a distribution map provided.

Notoparmelia , a new genus of Parmeliaceae (Ascomycota) based on overlooked reproductive anatomical features, phylogeny and distribution pattern

The importance of the anatomy and fine morphology of reproductive structures for the systematics of the family Parmeliaceae is highlighted by the new genus Notoparmelia, described here for Australasian species of Parmelia. These species were known to form a monophyletic lineage but correlated characters for its delimitation were lacking. A major characteristic used here for the circum- scription of this genus is the overlooked apothecial anatomy. The proper exciple is reduced to one layer formed exclusively by large hyphae without any clear branching pattern and embedded in an abundant polysaccharide matrix. This feature differs from the rest of Parmeliaceae which have a strati- fied three-layered proper exciple composed of a thin hyaline layer, intermediate layer and basal cor- tex-like structure. The anatomy of proper exciple, together with the thickness of spore walls and other morphological characters such as lobe morphology, pseudocyphellae and rhizine type, allow a precise diagnosis of the new genus. The area of distribution is also useful for characterizing this genus. Sixteen new combinations are proposed.

A discussion about reproductive modes of Pseudevernia furfuracea based on phylogenetic data

Two asexual reproductive strategies of the common lichen Pseudevernia furfuracea are described. Although the species propagates mainly by isidia, some specimens also show the development of soralia. Morphological, chemical and molecular analyses were performed on three such sorediate specimens from the Canary Islands, Morocco and Turkey. Maximum parsimony, maximum likelihood and Bayesian analyses indicate that: a) sorediate samples represent only a morphological variant of the reproductive mode and b) the separation of taxa (at species level or below) on the basis of their containing either olivetoric acid or physodic and oxyphysodic acids is not appropriate. In addition, a phylogenetic reconstruction of the genus Pseudevernia is presented for the first time. The tree shows two sister monophyletic clades, one containing American species ( P. intensa , P. cladonia , P. consocians ), and the second encompassing the P. furfuracea samples (including sorediate specimens). The biological and taxonomic significance of soralia in sorediate samples is discussed.

Validation of the Hirst-Type Spore Trap for Simultaneous Monitoring of Prokaryotic and Eukaryotic Biodiversities in Urban Air Samples by Next-Generation Sequencing

ABSTRACT Pollen, fungi, and bacteria are the main microscopic biological entities present in outdoor air, causing allergy symptoms and disease transmission and having a significant role in atmosphere dynamics. Despite their relevance, a method for monitoring simultaneously these biological particles in metropolitan environments has not yet been developed. Here, we assessed the use of the Hirst-type spore trap to characterize the global airborne biota by high-throughput DNA sequencing, selecting regions of the 16S rRNA gene and internal transcribed spacer for the taxonomic assignment. We showed that aerobiological communities are well represented by this approach. The operational taxonomic units (OTUs) of two traps working synchronically compiled >87% of the total relative abundance for bacterial diversity collected in each sampler, >89% for fungi, and >97% for pollen. We found a good correspondence between traditional characterization by microscopy and genetic identification, obtaining more-accurate taxonomic assignments and detecting a greater diversity using the latter. We also demonstrated that DNA sequencing accurately detects differences in biodiversity between samples. We concluded that high-throughput DNA sequencing applied to aerobiological samples obtained with Hirst spore traps provides reliable results and can be easily implemented for monitoring prokaryotic and eukaryotic entities present in the air of urban areas. IMPORTANCE Detection, monitoring, and characterization of the wide diversity of biological entities present in the air are difficult tasks that require time and expertise in different disciplines. We have evaluated the use of the Hirst spore trap (an instrument broadly employed in aerobiological studies) to detect and identify these organisms by DNA-based analyses. Our results showed a consistent collection of DNA and a good concordance with traditional methods for identification, suggesting that these devices can be used as a tool for continuous monitoring of the airborne biodiversity, improving taxonomic resolution and characterization together. They are also suitable for acquiring novel DNA amplicon-based information in order to gain a better understanding of the biological particles present in a scarcely known environment such as the air.